RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FANCF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092118

Ensembl transcript IDs: ENSMUST00000169357.2

Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp GTGGTGAACACTAACATAGGCAGGGTCCTGGGTCCATTACCAGAACAAAAACAACAGGGTCTGTCCAGATaGCCAGCCTGGGAACTGAGA +
Preference number: 2 (lower is better)
Translates to: VVNTNIGRVLGPLPEQKQQGLSR*PAWELR
Trigger: TCTCAGTTCCCAGGCTGGGCATCTGGACAGACCCTG...TTGTTTTTGTTCTGGTAATGGACCCAGGACCCTGCCTATGTTAGTGTTCACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
3UTR-3UTR GCA 90 bp GAGCATGTATATAGGGAATTGGGGAGAACACTGACAATTTGTAAACTGCATAGTAGTAGCAGGATGCTGTaGATAGAGGCTTTGGTGAGA +
Preference number: 2 (lower is better)
Translates to: EHVYRELGRTLTICKLHSSSRML*IEALVR
Trigger: TCTCACCAAAGCCTCTATGCACAGCATCCTGCTACT...ACTATGCAGTTTACAAATTGTCAGTGTTCTCCCCAATTCCCTATATACATGCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR CCA 90 bp AGAAGTATGCTTGTTATTCCCTCTATGGGACAGGGTCTGTCCAGATGCCCAGCCGTCCGTGGCCTGGGCTaGCTCCGGGTCTTCCTCGCG +
Preference number: 4 (lower is better)
Translates to: RSMLVIPSMGQGLSRCPAVRGLG*LRVFLA
Trigger: CGCGAGGAAGACCCGGAGCCAGCCCAGGCCACGGAC...GGCTGGGCATCTGGACAGACCCTGTCCCATAGAGGGAATAACAAGCATACTTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR GCA 90 bp GAAGTATGCTTGTTATTCCCTCTATGGGACAGGGTCTGTCCAGATGCCCAGCCTGCATGGCACAAGCTCTaGAGCCTTAGGCACAGCTCT +
Preference number: 4 (lower is better)
Translates to: EVCLLFPLWDRVCPDAQPAWHKL*SLRHSS
Trigger: AGAGCTGTGCCTAAGGCTGCAGAGCTTGTGCCATGC...AGGCTGGGCATCTGGACAGACCCTGTCCCATAGAGGGAATAACAAGCATACTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR CCA 90 bp GGTAAACAGGTAAAAGAAAGCAAGTTTAGGGCTCTAACTCTAGCCCAGTCAGCTCGGAGGCCAGGCGCTTaGCTGGCAGATGGCGGCAAA +
Preference number: 4 (lower is better)
Translates to: GKQVKESKFRALTLAQSARRPGA*LADGGK
Trigger: TTTGCCGCCATCTGCCAGCCAAGCGCCTGGCCTCCG...AGCTGACTGGGCTAGAGTTAGAGCCCTAAACTTGCTTTCTTTTACCTGTTTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR GCA 90 bp GCAGGGTCCTGGGTCCATTACCAGAACAAAAACAATCTCTATATAATACATATTGTAGGCGCGAGACAGTaGGTGGTGGCAGCCCGCCAC +
Preference number: 4 (lower is better)
Translates to: AGSWVHYQNKNNLYIIHIVGARQ*VVAARH
Trigger: GTGGCGGGCTGCCACCACGCACTGTCTCGCGCCTAC...AATATGTATTATATAGAGATTGTTTTTGTTCTGGTAATGGACCCAGGACCCTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR GCA 90 bp AACTTTGTACTACTGAAGAGTGTTAGGAACCAAGTAAATCATACAAAAGTACCCCCCACTGCAGCGCCCTaGGCACCTTTTCGGCGTCCC +
Preference number: 4 (lower is better)
Translates to: NFVLLKSVRNQVNHTKVPPTAAP*APFRRP
Trigger: GGGACGCCGAAAAGGTGCGCAGGGCGCTGCAGTGGG...GGGTACTTTTGTATGATTTACTTGGTTCCTAACACTCTTCAGTAGTACAAAGTT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR GCA 90 bp GCAGGGTCCTGGGTCCATTACCAGAACAAAAACAATCTCTATATAATACATATTACCAGCACCTCTTCCTaGAGAAATGGCTGGGCATGG +
Preference number: 4 (lower is better)
Translates to: AGSWVHYQNKNNLYIIHITSTSS*RNGWAW
Trigger: CCATGCCCAGCCATTTCTGCAGGAAGAGGTGCTGGT...AATATGTATTATATAGAGATTGTTTTTGTTCTGGTAATGGACCCAGGACCCTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 90 bp CCCCGCCCAGCTCGTGCAGGCGCGCGTCCAGCAGCTCCGCGTGCGTaGGCAGCAGCGCGCTCCTGGGCGCGTCCCCGCCGAGGCGGCACA +
Preference number: 5 (lower is better)
Translates to: PRPARAGARPAAPRA*AAARSWARPRRGGT
Trigger: TGTGCCGCCTCGGCGGGGACGCGCCCAGGAGCGCGCTGCTGCGCACGCACGCGGAGCTGCTGGACGCGCGCCTGCACGAGCTGGGCGGGG
80% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CCA 90 bp GGCGCGCGTCCAGCAGCTCCGCGTGCGTGCGCAGCAGCGCGCTCCTaGGCGCGTCCCCGCCGAGGCGGCACAGCAGGCGCAGCGCGCTTC +
Preference number: 5 (lower is better)
Translates to: GARPAAPRACAAARS*ARPRRGGTAGAARF
Trigger: GAAGCGCGCTGCGCCTGCTGTGCCGCCTCGGCGGGGACGCGCCCAGGAGCGCGCTGCTGCGCACGCACGCGGAGCTGCTGGACGCGCGCC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 90 bp AACGCGCCCACTGCAGCGCCCTGCGCACCTTTTCGGCGTCCCACGTaGTCACCAGCGACCCACACGACACGGCCAACAGCTCGGAGAATC +
Preference number: 5 (lower is better)
Translates to: NAPTAAPCAPFRRPT*SPATHTTRPTARRI
Trigger: GATTCTCCGAGCTGTTGGCCGTGTCGTGTGGGTCGCTGGTGAGCACGTGGGACGCCGAAAAGGTGCGCAGGGCGCTGCAGTGGGCGCGTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 90 bp AGCGTCGGTACACGTGGAGCAGATAACGCGCCCACTGCAGCGCCCTaGGCACCTTTTCGGCGTCCCACGTGCTCACCAGCGACCCACACG +
Preference number: 5 (lower is better)
Translates to: SVGTRGADNAPTAAP*APFRRPTCSPATHT
Trigger: CGTGTGGGTCGCTGGTGAGCACGTGGGACGCCGAAAAGGTGCGCAGGGCGCTGCAGTGGGCGCGTTATCTGCTCCACGTGTACCGACGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR CAA 90 bp AGAAGTATGCTTGTTATTCCCTCTATGGGACAGGGTCTGTCCAGATGCCCAGCCAACGTGTCCAGGAGTTaGCGCGCGGCCGCGGAGTCG +
Preference number: 5 (lower is better)
Translates to: RSMLVIPSMGQGLSRCPANVSRS*RAAAES
Trigger: CGACTCCGCGGCCGCGCGCAAACTCCTGGACACGTT...GGCTGGGCATCTGGACAGACCCTGTCCCATAGAGGGAATAACAAGCATACTTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 90 bp CTAGCACGATCCCACACTCAAGCACCACCAGGAGGTCTGTCCAGATaGTCATCCCAGGAACCTCGAAATCTCCATCCAAGGCTTTGCGGG +
Preference number: 5 (lower is better)
Translates to: LARSHTQAPPGGLSR*SSQEPRNLHPRLCG
Trigger: CCCGCAAAGCCTTGGATGGAGATTTCGAGGTTCCTGGGATGAGCATCTGGACAGACCTCCTGGTGGTGCTTGAGTGTGGGATCGTGCTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS-3UTR CAA 90 bp TTGGTGAGAAGTATGCTTGTTATTCCCTCTATGGGACAGGGTCTGTCCAGATGCACGGAGGCCAGGCGCTaGGCTGGCAGATGGCGGCAA +
Preference number: 5 (lower is better)
Translates to: LVRSMLVIPSMGQGLSRCTEARR*AGRWRQ
Trigger: TTGCCGCCATCTGCCAGCCAAGCGCCTGGCCTCCGT...GCATCTGGACAGACCCTGTCCCATAGAGGGAATAACAAGCATACTTCTCACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 90 bp TCCAGATGCTCATCCCAGGAACCTCGAAATCTCCATCCAAGGCTTTaGGGGACCTTAGGGTCACCAGCACCTCTTCCTGCAGAAATGGCT +
Preference number: 5 (lower is better)
Translates to: SRCSSQEPRNLHPRL*GTLGSPAPLPAEMA
Trigger: AGCCATTTCTGCAGGAAGAGGTGCTGGTGACCCTAAGGTCCCGCAAAGCCTTGGATGGAGATTTCGAGGTTCCTGGGATGAGCATCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 72 bp CCCGCGGCCCGCGCGTCCACAACGTGTCCAGGAGTTTaGGCGCGGCCGCGGAGTCGGCCCCGCCCAGCTCGT +
Preference number: 6 (lower is better)
Translates to: PAARASTTCPGV*ARPRSRPRPAR
Trigger: ACGAGCTGGGCGGGGCCGACTCCGCGGCCGCGCGCAAACTCCTGGACACGTTGTGGACGCGCGGGCCGCGGG
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CAA 72 bp TCCCGCGGCCCGCGCGTCCACAACGTGTCCAGGAGTTaGCGCGCGGCCGCGGAGTCGGCCCCGCCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: SRGPRVHNVSRS*RAAAESAPPSS
Trigger: CGAGCTGGGCGGGGCCGACTCCGCGGCCGCGCGCAAACTCCTGGACACGTTGTGGACGCGCGGGCCGCGGGA
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CAA 90 bp AGCACGTGCTCCCGCGGCCCGCGCGTCCACAACGTGTCCAGGAGTTaGCGCGCGGCCGCGGAGTCGGCCCCGCCCAGCTCGTGCAGGCGC +
Preference number: 6 (lower is better)
Translates to: STCSRGPRVHNVSRS*RAAAESAPPSSCRR
Trigger: GCGCCTGCACGAGCTGGGCGGGGCCGACTCCGCGGCCGCGCGCAAACTCCTGGACACGTTGTGGACGCGCGGGCCGCGGGAGCACGTGCT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CCA 72 bp AGGAGGACCAGGCGCGACTGCGGCACGTCGTCTCGGTaGTCCGCGGCGGGGCCCGGGAACAGCAAGCTCGGC +
Preference number: 6 (lower is better)
Translates to: RRTRRDCGTSSR*SAAGPGNSKLG
Trigger: GCCGAGCTTGCTGTTCCCGGGCCCCGCCGCGGACCACCGAGACGACGTGCCGCAGTCGCGCCTGGTCCTCCT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 72 bp ACACGTGGAGCAGATAACGCGCCCACTGCAGCGCCCTaGGCACCTTTTCGGCGTCCCACGTGCTCACCAGCG +
Preference number: 6 (lower is better)
Translates to: TRGADNAPTAAP*APFRRPTCSPA
Trigger: CGCTGGTGAGCACGTGGGACGCCGAAAAGGTGCGCAGGGCGCTGCAGTGGGCGCGTTATCTGCTCCACGTGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 72 bp GCTTTGCGGGACCTTAGGGTCACCAGCACCTCTTCCTaGAGAAATGGCTGGGCATGGCACAAGCTCTGCAGC +
Preference number: 6 (lower is better)
Translates to: ALRDLRVTSTSS*RNGWAWHKLCS
Trigger: GCTGCAGAGCTTGTGCCATGCCCAGCCATTTCTGCAGGAAGAGGTGCTGGTGACCCTAAGGTCCCGCAAAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CCA 72 bp GTCACCAGCACCTCTTCCTGCAGAAATGGCTGGGCATaGCACAAGCTCTGCAGCCTTAGGCACAGCTCTTCC +
Preference number: 6 (lower is better)
Translates to: VTSTSSCRNGWA*HKLCSLRHSSS
Trigger: GGAAGAGCTGTGCCTAAGGCTGCAGAGCTTGTGCCATGCCCAGCCATTTCTGCAGGAAGAGGTGCTGGTGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CCA 72 bp CTTAGGGTCACCAGCACCTCTTCCTGCAGAAATGGCTaGGCATGGCACAAGCTCTGCAGCCTTAGGCACAGC +
Preference number: 6 (lower is better)
Translates to: LRVTSTSSCRNG*AWHKLCSLRHS
Trigger: GCTGTGCCTAAGGCTGCAGAGCTTGTGCCATGCCCAGCCATTTCTGCAGGAAGAGGTGCTGGTGACCCTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CAA 72 bp CATGTCCTCCATCTGTGTAGGGACCCAGGCACCCTTTaGCAGATCATAGTGCAGCCGCGTGGCCCACGTTGT +
Preference number: 6 (lower is better)
Translates to: HVLHLCRDPGTL*QIIVQPRGPRC
Trigger: ACAACGTGGGCCACGCGGCTGCACTATGATCTGCAAAAGGGTGCCTGGGTCCCTACACAGATGGAGGACATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS CAA 90 bp GTCCAGATGCTCATCCCAGGAACCTCGAAATCTCCATCCAAGGCTTaGCGGGACCTTAGGGTCACCAGCACCTCTTCCTGCAGAAATGGC +
Preference number: 6 (lower is better)
Translates to: VQMLIPGTSKSPSKA*RDLRVTSTSSCRNG
Trigger: GCCATTTCTGCAGGAAGAGGTGCTGGTGACCCTAAGGTCCCGCAAAGCCTTGGATGGAGATTTCGAGGTTCCTGGGATGAGCATCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2
CDS GCA 72 bp TCCCACACTCAAGCACCACCAGGAGGTCTGTCCAGATaGTCATCCCAGGAACCTCGAAATCTCCATCCAAGG +
Preference number: 6 (lower is better)
Translates to: SHTQAPPGGLSR*SSQEPRNLHPR
Trigger: CCTTGGATGGAGATTTCGAGGTTCCTGGGATGAGCATCTGGACAGACCTCCTGGTGGTGCTTGAGTGTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000169357.2