Pregenerated sensors for FANCB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047757Ensembl transcript IDs: ENSMUST00000057150.8, ENSMUST00000167446.8
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GACGTTACAGCAGTGATTATGCGTGTAGACTCTGCCTTGGATGACTaGCCGCAAAAAGAGCTTTCCGCTTCCACGCTACTAGAGACCAGC | + |
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Preference number: 5 (lower is better) Translates to: DVTAVIMRVDSALDD*PQKELSASTLLETS Trigger: GCTGGTCTCTAGTAGCGTGGAAGCGGAAAGCTCTTTTTGCGGCCAGTCATCCAAGGCAGAGTCTACACGCATAATCACTGCTGTAACGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS TCA 90 bp | AAGAGACGTTACAGCAGTGATTATGCGTGTAGACTCTGCCTTGGATaGCTGGCCGCAAAAAGAGCTTTCCGCTTCCACGCTACTAGAGAC | + |
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Preference number: 5 (lower is better) Translates to: KRRYSSDYACRLCLG*LAAKRAFRFHATRD Trigger: GTCTCTAGTAGCGTGGAAGCGGAAAGCTCTTTTTGCGGCCAGTCATCCAAGGCAGAGTCTACACGCATAATCACTGCTGTAACGTCTCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CCA 90 bp | GGGACACTGTCTTCACCTTCATCACAGAAAGGAACAAGACCGTCCTaGTCTAACTTAACCATTTCATCACTTGGCAGACTGTCACCTTTC | + |
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Preference number: 5 (lower is better) Translates to: GTLSSPSSQKGTRPS*SNLTISSLGRLSPF Trigger: GAAAGGTGACAGTCTGCCAAGTGATGAAATGGTTAAGTTAGACCAGGACGGTCTTGTTCCTTTCTGTGATGAAGGTGAAGACAGTGTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS TCA 90 bp | ACTAGAGACCAGCTGCATCCTTTCGCTGTCTGGTCCTGCTTCCTTTaGCATCAAGTATGCTTCTGGAAAAGAATTCATACTCAAACTAAT | + |
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Preference number: 5 (lower is better) Translates to: TRDQLHPFAVWSCFL*HQVCFWKRIHTQTN Trigger: ATTAGTTTGAGTATGAATTCTTTTCCAGAAGCATACTTGATGTCAAAGGAAGCAGGACCAGACAGCGAAAGGATGCAGCTGGTCTCTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS GCA 90 bp | TTTGCGCCCACAACTAAGTCATCATCTAGTACATGGCACCATGTCTaGTCTACAATATGTTCTGGCTCTGGAAAATTGTCTGGTAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: FAPTTKSSSSTWHHV*STICSGSGKLSGKF Trigger: AAACTTACCAGACAATTTTCCAGAGCCAGAACATATTGTAGAGCAGACATGGTGCCATGTACTAGATGATGACTTAGTTGTGGGCGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 90 bp | GGGAGAACTTTGATGAGATGGTCGAGACACTGGAACAAAACTCCTTaGCTCCTGCAATATATTGTTAAAATTCCTTCAGATGCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: GRTLMRWSRHWNKTP*LLQYIVKIPSDAVL Trigger: GAGAACAGCATCTGAAGGAATTTTAACAATATATTGCAGGAGCCAAGGAGTTTTGTTCCAGTGTCTCGACCATCTCATCAAAGTTCTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 90 bp | GGATTATCTCTGTCACTAATGTTTAGCAGCACAGTGCAACACAATTaGTTGAACACTAGAAGTGGTGAAAGAGACGTTACAGCAGTGATT | + |
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Preference number: 5 (lower is better) Translates to: GLSLSLMFSSTVQHN*LNTRSGERDVTAVI Trigger: AATCACTGCTGTAACGTCTCTTTCACCACTTCTAGTGTTCAACCAATTGTGTTGCACTGTGCTGCTAAACATTAGTGACAGAGATAATCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CCA 90 bp | TCCTCTGTATGTTCTACTGATTCCTTCTTTGGGAATGCCAGGAGGTaGTTCTTACTAAAAAGATCTTGTAGATTAAAATCAAGGTTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SSVCSTDSFFGNARR*FLLKRSCRLKSRLP Trigger: TGGCAACCTTGATTTTAATCTACAAGATCTTTTTAGTAAGAACCACCTCCTGGCATTCCCAAAGAAGGAATCAGTAGAACATACAGAGGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CAA 72 bp | GACGTTACAGCAGTGATTATGCGTGTAGACTCTGCCTaGGATGACTGGCCGCAAAAAGAGCTTTCCGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: DVTAVIMRVDSA*DDWPQKELSAS Trigger: GGAAGCGGAAAGCTCTTTTTGCGGCCAGTCATCCAAGGCAGAGTCTACACGCATAATCACTGCTGTAACGTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CAA 90 bp | GGTGAAAGAGACGTTACAGCAGTGATTATGCGTGTAGACTCTGCCTaGGATGACTGGCCGCAAAAAGAGCTTTCCGCTTCCACGCTACTA | + |
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Preference number: 6 (lower is better) Translates to: GERDVTAVIMRVDSA*DDWPQKELSASTLL Trigger: TAGTAGCGTGGAAGCGGAAAGCTCTTTTTGCGGCCAGTCATCCAAGGCAGAGTCTACACGCATAATCACTGCTGTAACGTCTCTTTCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS TCA 72 bp | GAGCCATACCTTCATAAAATTCGGGGCATGGGTAGGTaGTGTGACACAGAAGGGATACTTGGGCAATACTCC | + |
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Preference number: 6 (lower is better) Translates to: EPYLHKIRGMGR*CDTEGILGQYS Trigger: GGAGTATTGCCCAAGTATCCCTTCTGTGTCACATCACCTACCCATGCCCCGAATTTTATGAAGGTATGGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CCA 72 bp | GGTGCTTCAGTATCCTTTCTCTCTGAACTTTGCGCTTaGACTGACGGATTTTGGCCCTTCTCCCTAAAAATG | + |
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Preference number: 6 (lower is better) Translates to: GASVSFLSELCA*TDGFWPFSLKM Trigger: CATTTTTAGGGAGAAGGGCCAAAATCCGTCAGTCCAAGCGCAAAGTTCAGAGAGAAAGGATACTGAAGCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | TGTTTCAAGAGCCATACCTTCATAAAATTCGGGGCATaGGTAGGTGATGTGACACAGAAGGGATACTTGGGC | + |
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Preference number: 6 (lower is better) Translates to: CFKSHTFIKFGA*VGDVTQKGYLG Trigger: GCCCAAGTATCCCTTCTGTGTCACATCACCTACCCATGCCCCGAATTTTATGAAGGTATGGCTCTTGAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CAA 72 bp | ATCTGCATCCAGAGAGTCCTCAAAAACGACCAGTACTaGTTCAGTTCCAACTCCAGCAAAGTCATTCACCAG | + |
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Preference number: 6 (lower is better) Translates to: ICIQRVLKNDQY*FSSNSSKVIHQ Trigger: CTGGTGAATGACTTTGCTGGAGTTGGAACTGAACAAGTACTGGTCGTTTTTGAGGACTCTCTGGATGCAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 72 bp | CCAGCTGCATCCTTTCGCTGTCTGGTCCTGCTTCCTTaGACATCAAGTATGCTTCTGGAAAAGAATTCATAC | + |
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Preference number: 6 (lower is better) Translates to: PAASFRCLVLLP*TSSMLLEKNSY Trigger: GTATGAATTCTTTTCCAGAAGCATACTTGATGTCAAAGGAAGCAGGACCAGACAGCGAAAGGATGCAGCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS TCA 72 bp | CAGCTGCATCCTTTCGCTGTCTGGTCCTGCTTCCTTTaGCATCAAGTATGCTTCTGGAAAAGAATTCATACT | + |
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Preference number: 6 (lower is better) Translates to: QLHPFAVWSCFL*HQVCFWKRIHT Trigger: AGTATGAATTCTTTTCCAGAAGCATACTTGATGTCAAAGGAAGCAGGACCAGACAGCGAAAGGATGCAGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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| CDS CCA 72 bp | TCTTCACCTTCATCACAGAAAGGAACAAGACCGTCCTaGTCTAACTTAACCATTTCATCACTTGGCAGACTG | + |
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Preference number: 6 (lower is better) Translates to: SSPSSQKGTRPS*SNLTISSLGRL Trigger: CAGTCTGCCAAGTGATGAAATGGTTAAGTTAGACCAGGACGGTCTTGTTCCTTTCTGTGATGAAGGTGAAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | ACTTTTGCGCCCACAACTAAGTCATCATCTAGTACATaGCACCATGTCTGCTCTACAATATGTTCTGGCTCT | + |
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Preference number: 6 (lower is better) Translates to: TFAPTTKSSSST*HHVCSTICSGS Trigger: AGAGCCAGAACATATTGTAGAGCAGACATGGTGCCATGTACTAGATGATGACTTAGTTGTGGGCGCAAAAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | TTGAAGGAACATATTTCAGGGAGAACTTTGATGAGATaGTCGAGACACTGGAACAAAACTCCTTGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: LKEHISGRTLMR*SRHWNKTPWLL Trigger: CAGGAGCCAAGGAGTTTTGTTCCAGTGTCTCGACCATCTCATCAAAGTTCTCCCTGAAATATGTTCCTTCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | TTTCTCTCTGAACTTTGCGCTTGGACTGACGGATTTTaGCCCTTCTCCCTAAAAATGTCATGGCCCTATTAT | + |
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Preference number: 6 (lower is better) Translates to: FLSELCAWTDGF*PFSLKMSWPYY Trigger: ATAATAGGGCCATGACATTTTTAGGGAGAAGGGCCAAAATCCGTCAGTCCAAGCGCAAAGTTCAGAGAGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 90 bp | TTTTCGACCTTCAGATATTTGAAGGAACATATTTCAGGGAGAACTTaGATGAGATGGTCGAGACACTGGAACAAAACTCCTTGGCTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FSTFRYLKEHISGRT*MRWSRHWNKTPWLL Trigger: CAGGAGCCAAGGAGTTTTGTTCCAGTGTCTCGACCATCTCATCAAAGTTCTCCCTGAAATATGTTCCTTCAAATATCTGAAGGTCGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | ATTTCAGGGAGAACTTTGATGAGATGGTCGAGACACTaGAACAAAACTCCTTGGCTCCTGCAATATATTGTT | + |
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Preference number: 6 (lower is better) Translates to: ISGRTLMRWSRH*NKTPWLLQYIV Trigger: AACAATATATTGCAGGAGCCAAGGAGTTTTGTTCCAGTGTCTCGACCATCTCATCAAAGTTCTCCCTGAAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 90 bp | TCATGCTCCTCTTCAGCCAAAGGGTCTTCACAGCAATCCAGTGGTTaGGTTGAATACCATATTTTGACAAAATCTGTTACTGTAAATGAG | + |
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Preference number: 6 (lower is better) Translates to: SCSSSAKGSSQQSSG*VEYHILTKSVTVNE Trigger: CTCATTTACAGTAACAGATTTTGTCAAAATATGGTATTCAACCAAACCACTGGATTGCTGTGAAGACCCTTTGGCTGAAGAGGAGCATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS TCA 72 bp | AAAGTGCAATTACAAAATTGGCCAGTGTCTTTACAATaGGGTCTGATTTCAACTGAATCTCAGCCAACGCCA | + |
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Preference number: 6 (lower is better) Translates to: KVQLQNWPVSLQ*GLISTESQPTP Trigger: TGGCGTTGGCTGAGATTCAGTTGAAATCAGACCTCATTGTAAAGACACTGGCCAATTTTGTAATTGCACTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS GCA 72 bp | ACAACTAAGTCATCATCTAGTACATGGCACCATGTCTaGTCTACAATATGTTCTGGCTCTGGAAAATTGTCT | + |
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Preference number: 6 (lower is better) Translates to: TTKSSSSTWHHV*STICSGSGKLS Trigger: AGACAATTTTCCAGAGCCAGAACATATTGTAGAGCAGACATGGTGCCATGTACTAGATGATGACTTAGTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 72 bp | AGGAATGTACTAGTTTCTCTGTCAAACATCATCCTTTaGACACCTAAGACCAGTGGATCTGTAGGCATTTCT | + |
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Preference number: 6 (lower is better) Translates to: RNVLVSLSNIIL*TPKTSGSVGIS Trigger: AGAAATGCCTACAGATCCACTGGTCTTAGGTGTCAAAAGGATGATGTTTGACAGAGAAACTAGTACATTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 90 bp | GATATCAGAAGGAATGTACTAGTTTCTCTGTCAAACATCATCCTTTaGACACCTAAGACCAGTGGATCTGTAGGCATTTCTAAATCTGCA | + |
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Preference number: 6 (lower is better) Translates to: DIRRNVLVSLSNIIL*TPKTSGSVGISKSA Trigger: TGCAGATTTAGAAATGCCTACAGATCCACTGGTCTTAGGTGTCAAAAGGATGATGTTTGACAGAGAAACTAGTACATTCCTTCTGATATC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 72 bp | ACAACCTTAAATTTCTTTTCTGAAACAGCACAAGCCTaGGACGGGAATGACACGATGAAAAATCGGTTTCTT | + |
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Preference number: 6 (lower is better) Translates to: TTLNFFSETAQA*DGNDTMKNRFL Trigger: AAGAAACCGATTTTTCATCGTGTCATTCCCGTCCAAGGCTTGTGCTGTTTCAGAAAAGAAATTTAAGGTTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CAA 72 bp | TCTTCAGCCAAAGGGTCTTCACAGCAATCCAGTGGTTaGGTTGAATACCATATTTTGACAAAATCTGTTACT | + |
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Preference number: 6 (lower is better) Translates to: SSAKGSSQQSSG*VEYHILTKSVT Trigger: AGTAACAGATTTTGTCAAAATATGGTATTCAACCAAACCACTGGATTGCTGTGAAGACCCTTTGGCTGAAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS TCA 72 bp | AATCTCACCGATCCACTCAATAGAGGAAAGCATAAGTaGTATAGTAGTAACTTTCCCAATTGCAGAAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: NLTDPLNRGKHK*YSSNFPNCRRD Trigger: ATCTCTTCTGCAATTGGGAAAGTTACTACTATATCACTTATGCTTTCCTCTATTGAGTGGATCGGTGAGATT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS TCA 72 bp | AGCCAAAGGGTCTTCACAGCAATCCAGTGGTTTGGTTaGATACCATATTTTGACAAAATCTGTTACTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: SQRVFTAIQWFG*IPYFDKICYCK Trigger: TTTACAGTAACAGATTTTGTCAAAATATGGTATTCAACCAAACCACTGGATTGCTGTGAAGACCCTTTGGCT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS TCA 72 bp | TCAAAACTCAAAAGTCTCTCCACTCTGTTGAGATTGTaGAGAAGCAGGATACAATATTTGAAAGCTTCACTA | + |
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Preference number: 6 (lower is better) Translates to: SKLKSLSTLLRL*RSRIQYLKASL Trigger: TAGTGAAGCTTTCAAATATTGTATCCTGCTTCTTCACAATCTCAACAGAGTGGAGAGACTTTTGAGTTTTGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057150.8 ENSMUST00000167446.8 |
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| CDS CCA 72 bp | TGTTCTACTGATTCCTTCTTTGGGAATGCCAGGAGGTaGTTCTTACTAAAAAGATCTTGTAGATTAAAATCA | + |
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Preference number: 6 (lower is better) Translates to: CSTDSFFGNARR*FLLKRSCRLKS Trigger: TGATTTTAATCTACAAGATCTTTTTAGTAAGAACCACCTCCTGGCATTCCCAAAGAAGGAATCAGTAGAACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167446.8 |
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