Pregenerated sensors for FAM98B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027349Ensembl transcript IDs: ENSMUST00000028825.5
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ATCATCAACCGGTGGCATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGGGGATGTTCAAGTATaGTCCTCAGAACACTATATC | + |
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Preference number: 2 (lower is better) Translates to: IINRWHKRAFCIQDAFLRGDVQV*SSEHYI Trigger: GATATAGTGTTCTGAGGAGCATACTTGAACATCCCC...CCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATGCCACCGGTTGATGAT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| 3UTR-3UTR GCA 90 bp | TGTTACTGGCGGGTGTCATTATGTTTCAATCCTAAACAAAATACCAGTTTACAGCTTCTGTATTCAGGATaGCTTCCTCAGGGCACTGAC | + |
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Preference number: 2 (lower is better) Translates to: CYWRVSLCFNPKQNTSLQLLYSG*LPQGTD Trigger: GTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAG...CTGTAAACTGGTATTTTGTTTAGGATTGAAACATAATGACACCCGCCAGTAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| 3UTR TCA 72 bp | GGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTaGCACGATCTACCTCAGGGGGATGTTCAAGTATGC | + |
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Preference number: 3 (lower is better) Translates to: GPSVFRMPSSGH*HDLPQGDVQVC Trigger: GCATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| 3UTR-3UTR CAA 90 bp | CTTTTTGTTACTGGCGGGTGTCATTATGTTTCAATCCTAAACAAAATACCAGTTTTTGTGTTTTTGCTTTaGAAAAAGACGCAGCATGCT | + |
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Preference number: 3 (lower is better) Translates to: LFVTGGCHYVSILNKIPVFVFLL*KKTQHA Trigger: AGCATGCTGCGTCTTTTTCAAAAGCAAAAACACAAA...AACTGGTATTTTGTTTAGGATTGAAACATAATGACACCCGCCAGTAACAAAAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 24 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR GCA 90 bp | CATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTGACACGATCTCAGTCCACCCTCTGCTaGCTTGGAGAGTGCCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: HKRAFCIQDAFLRALTRSQSTLC*LGECLF Trigger: GAACAGGCACTCTCCAAGGCAGCAGAGGGTGGACTG...AGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR GCA 90 bp | CATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTGACACGATCTCACCATAATCGCCCCTaGCTTGGAAACCTCCTCGGC | + |
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Preference number: 4 (lower is better) Translates to: HKRAFCIQDAFLRALTRSHHNRP*LGNLLG Trigger: GCCGAGGAGGTTTCCAAGGCAGGGGCGATTATGGTG...AGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR TCA 90 bp | CATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTGACACGATCTCTCTCCCAGCTGAAGTaGTGCTTTCTTCCAGGTTGC | + |
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Preference number: 4 (lower is better) Translates to: HKRAFCIQDAFLRALTRSLSQLK*CFLPGC Trigger: GCAACCTGGAAGAAAGCATCACTTCAGCTGGGAGAG...AGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR GCA 90 bp | CTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATGCTCCTGACCATCCAAAGGACTaGACTGTCACATCCAATCGT | + |
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Preference number: 4 (lower is better) Translates to: LPQGTDTIYLRGMFKYAPDHPKD*TVTSNR Trigger: ACGATTGGATGTGACAGTGCAGTCCTTTGGATGGTC...AGGAGCATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR GCA 90 bp | CATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTGACACGATCTGGCGGCAAGCAGATGTaGCAATGTGACTGTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: HKRAFCIQDAFLRALTRSGGKQM*QCDCCL Trigger: AAGACAACAGTCACATTGGCACATCTGCTTGCCGCC...AGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CCA 90 bp | CATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACTGACACGATCTACCTCCTCCTCCATATaGATCTCCATAACCTCTCCC | + |
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Preference number: 4 (lower is better) Translates to: HKRAFCIQDAFLRALTRSTSSSI*ISITSP Trigger: GGGAGAGGTTATGGAGATCCATATGGAGGAGGAGGT...AGATCGTGTCAGTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR TCA 90 bp | GGATGCCTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATGCATCACATACAGCTTaGACTTCCTGGCAAATTTCA | + |
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Preference number: 4 (lower is better) Translates to: GCLPQGTDTIYLRGMFKYASHTA*TSWQIS Trigger: TGAAATTTGCCAGGAAGTTCAAGCTGTATGTGATGC...ATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAGGCATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CCA 90 bp | CTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATGCTCCTCCCACATGGTTTTTCTaGACTCTACAGAGAATATCC | + |
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Preference number: 4 (lower is better) Translates to: LPQGTDTIYLRGMFKYAPPTWFF*TLQRIS Trigger: GGATATTCTCTGTAGAGTCCAGAAAAACCATGTGGG...AGGAGCATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR TCA 90 bp | CTTTTTGTTACTGGCGGGTGTCATTATGTTTCAATCCTAAACAAAATACCAGTTGCAGATGTGCCAATGTaGCTGTTGTCTTGGGCGACA | + |
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Preference number: 4 (lower is better) Translates to: LFVTGGCHYVSILNKIPVADVPM*LLSWAT Trigger: TGTCGCCCAAGACAACAGTCACATTGGCACATCTGC...AACTGGTATTTTGTTTAGGATTGAAACATAATGACACCCGCCAGTAACAAAAAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR GCA 90 bp | TGTTACTGGCGGGTGTCATTATGTTTCAATCCTAAACAAAATACCAGTTTACAGGGGCTGGTAAATTCTTaGTATGTTATCTGTTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: CYWRVSLCFNPKQNTSLQGLVNS*YVICFC Trigger: GCAAAAACAGATAACATAGCAAGAATTTACCAGCCC...CTGTAAACTGGTATTTTGTTTAGGATTGAAACATAATGACACCCGCCAGTAACA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | GGATGCCTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATCCACCCTCTGCTGCCTaGGAGAGTGCCTGTTCCTCT | + |
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Preference number: 5 (lower is better) Translates to: GCLPQGTDTIYLRGMFKYPPSAA*ESACSS Trigger: AGAGGAACAGGCACTCTCCAAGGCAGCAGAGGGTGG...ATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAGGCATCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | TCAACCGGTGGCATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGCACATAATCGCCCCTGCCTaGGAAACCTCCTCGGCCACC | + |
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Preference number: 5 (lower is better) Translates to: STGGIKGPSVFRMPSSGHIIAPA*ETSSAT Trigger: GGTGGCCGAGGAGGTTTCCAAGGCAGGGGCGATTAT...GTGCCCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATGCCACCGGTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | CTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATGCTCCTCTTGTCCTGATGATCTaGGACAGATCTTCACGGGCG | + |
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Preference number: 5 (lower is better) Translates to: LPQGTDTIYLRGMFKYAPLVLMI*DRSSRA Trigger: CGCCCGTGAAGATCTGTCCAAGATCATCAGGACAAG...AGGAGCATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | CTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATGCTCCTATGCTTTCTTCCAGGTaGCATAAGGACTTTATCTGG | + |
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Preference number: 5 (lower is better) Translates to: LPQGTDTIYLRGMFKYAPMLSSR*HKDFIW Trigger: CCAGATAAAGTCCTTATGCAACCTGGAAGAAAGCAT...AGGAGCATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | GGATGCCTTCCTCAGGGCACTGACACGATCTACCTCAGGGGGATGTTCAAGTATTATCTGTTTTTGCCTTaGCTCTATCGGACCATCCAA | + |
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Preference number: 5 (lower is better) Translates to: GCLPQGTDTIYLRGMFKYYLFLP*LYRTIQ Trigger: TTGGATGGTCCGATAGAGCAAAGGCAAAAACAGATA...ATACTTGAACATCCCCCTGAGGTAGATCGTGTCAGTGCCCTGAGGAAGGCATCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS GCA 90 bp | TTTCTTCCAGGTTGCATAAGGACTTTATCTGGGAGCCTAACCAAATaGAGAGCTCTGAAAACTCAGGTGAAGACAGTCCACCCTCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: FLPGCIRTLSGSLTK*RALKTQVKTVHPLL Trigger: CAGCAGAGGGTGGACTGTCTTCACCTGAGTTTTCAGAGCTCTGCATTTGGTTAGGCTCCCAGATAAAGTCCTTATGCAACCTGGAAGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | ATCATCAACCGGTGGCATAAAAGGGCCTTCTGTATTCAGGATGCCTTCCTCAGGGGCATCACATACAGCTaGAACTTCCTGGCAAATTTC | + |
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Preference number: 5 (lower is better) Translates to: IINRWHKRAFCIQDAFLRGITYS*NFLANF Trigger: GAAATTTGCCAGGAAGTTCAAGCTGTATGTGATGCC...CCTGAGGAAGGCATCCTGAATACAGAAGGCCCTTTTATGCCACCGGTTGATGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS GCA 90 bp | ATGTTATCTGTTTTTGCCTTTGCTCTATCGGACCATCCAAAGGACTaGACTGTCACATCCAATCGTTTCATTAACATCCGTCGGCGACAC | + |
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Preference number: 5 (lower is better) Translates to: MLSVFAFALSDHPKD*TVTSNRFINIRRRH Trigger: GTGTCGCCGACGGATGTTAATGAAACGATTGGATGTGACAGTGCAGTCCTTTGGATGGTCCGATAGAGCAAAGGCAAAAACAGATAACAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS-3UTR CAA 90 bp | CTTTTTGTTACTGGCGGGTGTCATTATGTTTCAATCCTAAACAAAATACCAGTTCTATGTTATCTGTTTTaGCCTTTGCTCTATCGGACC | + |
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Preference number: 5 (lower is better) Translates to: LFVTGGCHYVSILNKIPVLCYLF*PLLYRT Trigger: GGTCCGATAGAGCAAAGGCAAAAACAGATAACATAG...AACTGGTATTTTGTTTAGGATTGAAACATAATGACACCCGCCAGTAACAAAAAG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS TCA 72 bp | ACAGATCTTCACGGGCGGCAAGCAGATGTGCCAATGTaGCTGTTGTCTTGGGCGACAGAGCATAACGCTTGG | + |
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Preference number: 6 (lower is better) Translates to: TDLHGRQADVPM*LLSWATEHNAW Trigger: CCAAGCGTTATGCTCTGTCGCCCAAGACAACAGTCACATTGGCACATCTGCTTGCCGCCCGTGAAGATCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS CCA 72 bp | GGCTCAGCAGAAGTGGAATGTCTGAAGTGTCAGACTTaGGGACCCCGAGGGCATCACATACAGCTTGAACTT | + |
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Preference number: 6 (lower is better) Translates to: GSAEVECLKCQT*GPRGHHIQLEL Trigger: AAGTTCAAGCTGTATGTGATGCCCTCGGGGTCCCCAAGTCTGACACTTCAGACATTCCACTTCTGCTGAGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS CAA 90 bp | TTCCCACATGGTTTTTCTGGACTCTACAGAGAATATCCTTCACCTTaGACTCCACTTGGCTCAGCAGAAGTGGAATGTCTGAAGTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: FPHGFSGLYREYPSP*TPLGSAEVECLKCQ Trigger: CTGACACTTCAGACATTCCACTTCTGCTGAGCCAAGTGGAGTCAAAGGTGAAGGATATTCTCTGTAGAGTCCAGAAAAACCATGTGGGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS CCA 72 bp | ACTCTACAGAGAATATCCTTCACCTTTGACTCCACTTaGCTCAGCAGAAGTGGAATGTCTGAAGTGTCAGAC | + |
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Preference number: 6 (lower is better) Translates to: TLQRISFTFDST*LSRSGMSEVSD Trigger: GTCTGACACTTCAGACATTCCACTTCTGCTGAGCCAAGTGGAGTCAAAGGTGAAGGATATTCTCTGTAGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS CAA 72 bp | GGTTTTTCTGGACTCTACAGAGAATATCCTTCACCTTaGACTCCACTTGGCTCAGCAGAAGTGGAATGTCTG | + |
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Preference number: 6 (lower is better) Translates to: GFSGLYREYPSP*TPLGSAEVECL Trigger: CAGACATTCCACTTCTGCTGAGCCAAGTGGAGTCAAAGGTGAAGGATATTCTCTGTAGAGTCCAGAAAAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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| CDS GCA 72 bp | GTTTTTGCCTTTGCTCTATCGGACCATCCAAAGGACTaGACTGTCACATCCAATCGTTTCATTAACATCCGT | + |
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Preference number: 6 (lower is better) Translates to: VFAFALSDHPKD*TVTSNRFINIR Trigger: ACGGATGTTAATGAAACGATTGGATGTGACAGTGCAGTCCTTTGGATGGTCCGATAGAGCAAAGGCAAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028825.5 |
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