Pregenerated sensors for FAM8A1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069237Ensembl transcript IDs: ENSMUST00000099547.4
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTAGTGATGAGTACTGAGAGACTATCACTTGCCAGTTGTTTAGCCTaGATGGCAATGCAGCAACAAGACTCCAGGCTTAGGGCATGCTCA | + |
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Preference number: 1 (lower is better) Translates to: LVMSTERLSLASCLA*MAMQQQDSRLRACS Trigger: TGAGCATGCCCTAAGCCTGGAGTCTTGTTGCTGCATTGCCATTCAGGCTAAACAACTGGCAAGTGATAGTCTCTCAGTACTCATCACTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 90 bp | ACTCTCAGGCCTTCCTCACTAGCCCTTTTCTCCCAACACCTGCCATaGAGTAAGTGGGTTGTTGAGTTGATGATTTCTCAATGCTCACAA | + |
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Preference number: 1 (lower is better) Translates to: TLRPSSLALFSQHLP*SKWVVELMISQCSQ Trigger: TTGTGAGCATTGAGAAATCATCAACTCAACAACCCACTTACTCCATGGCAGGTGTTGGGAGAAAAGGGCTAGTGAGGAAGGCCTGAGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 90 bp | CCTTCCTCACTAGCCCTTTTCTCCCAACACCTGCCATGGAGTAAGTaGGTTGTTGAGTTGATGATTTCTCAATGCTCACAAAAAGCAGCT | + |
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Preference number: 1 (lower is better) Translates to: PSSLALFSQHLPWSK*VVELMISQCSQKAA Trigger: AGCTGCTTTTTGTGAGCATTGAGAAATCATCAACTCAACAACCCACTTACTCCATGGCAGGTGTTGGGAGAAAAGGGCTAGTGAGGAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 90 bp | CTACAGGTACATTCAGAACACTGGAGAGCACATACTGGGAATGTTTaGATATTCCTCCTGCATATTTATAGTTGGATTTTTGGGCACATG | + |
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Preference number: 1 (lower is better) Translates to: LQVHSEHWRAHTGNV*IFLLHIYSWIFGHM Trigger: CATGTGCCCAAAAATCCAACTATAAATATGCAGGAGGAATATCCAAACATTCCCAGTATGTGCTCTCCAGTGTTCTGAATGTACCTGTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 90 bp | GTTCTATTGTGGAGGCAAAGCAATACTTTTATCTTACATCCTATATaGCACAACTTGAATTCACAGCTAGATCTAAAGAACTTGTCGAGT | + |
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Preference number: 1 (lower is better) Translates to: VLLWRQSNTFILHPI*HNLNSQLDLKNLSS Trigger: ACTCGACAAGTTCTTTAGATCTAGCTGTGAATTCAAGTTGTGCCATATAGGATGTAAGATAAAAGTATTGCTTTGCCTCCACAATAGAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | CACCCAGGCACGAGTAAGGACTTTGGTCTTTGGTTATGTGGATGGTGGTGGCAAACTACCCTGCAAGTGTaGGGTGAGGGGACTCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: HPGTSKDFGLWLCGWWWQTTLQV*GEGTLR Trigger: CCTGAGAGTCCCCTCACCCCACACTTGCAGGGTAGT...TTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | ATGGCAATGCAGCAACAAGACTCCAGGCTTAGGGCATGCTCATTAAAGATCTTCCCTGCAAGTGTGGGGTaGGGGGACTCTCAGGCCTTC | + |
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Preference number: 2 (lower is better) Translates to: MAMQQQDSRLRACSLKIFPASVG*GDSQAF Trigger: GAAGGCCTGAGAGTCCCCTCACCCCACACTTGCAGG...GAAGATCTTTAATGAGCATGCCCTAAGCCTGGAGTCTTGTTGCTGCATTGCCAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | CTCAGGCCTTCCTCACTAGCCCTTTTCTCCCAACACCTGCCATGGAGTAAGTGGGTACAGTCAACACTTTaGGAACAGACCCCTGATCAC | + |
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Preference number: 2 (lower is better) Translates to: LRPSSLALFSQHLPWSKWVQSTL*EQTPDH Trigger: GTGATCAGGGGTCTGTTCTCAAAGTGTTGACTGTAC...CCACTTACTCCATGGCAGGTGTTGGGAGAAAAGGGCTAGTGAGGAAGGCCTGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | CCCCATCTTCCTTCAGAACTACTTCCCTTGGCCAGAAACGGGTGTGATTGTTTCCCTAGTGATGAGTACTaGGAGACTATCACTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: PHLPSELLPLARNGCDCFPSDEY*ETITCQ Trigger: CTGGCAAGTGATAGTCTCTCAGTACTCATCACTAGG...GAAACAATCACACCCGTTTCTGGCCAAGGGAAGTAGTTCTGAAGGAAGATGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | CACCCAGGCACGAGTAAGGACTTTGGTCTTTGGTTATGTGGATGGTGGTGGCAAAGAGCTTTAAAATCTTaGCAGAGCCACAAGCACATG | + |
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Preference number: 2 (lower is better) Translates to: HPGTSKDFGLWLCGWWWQRALKS*QSHKHM Trigger: CATGTGCTTGTGGCTCTGGCAAGATTTTAAAGCTCT...TTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | CACCCAGGCACGAGTAAGGACTTTGGTCTTTGGTTATGTGGATGGTGGTGGCAACCGAAGATTATATGCTaGCTTGCTTTAGAGAGAACA | + |
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Preference number: 2 (lower is better) Translates to: HPGTSKDFGLWLCGWWWQPKIIC*LALERT Trigger: TGTTCTCTCTAAAGCAAGGCAGCATATAATCTTCGG...TTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | CCCCATCTTCCTTCAGAACTACTTCCCTTGGCCAGAAACGGGTGTGATTGTTTCGGGCAATTAGGTAAATaGTTTGTAGGCAGAGTCAAG | + |
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Preference number: 2 (lower is better) Translates to: PHLPSELLPLARNGCDCFGQLGK*FVGRVK Trigger: CTTGACTCTGCCTACAAAGCATTTACCTAATTGCCC...GAAACAATCACACCCGTTTCTGGCCAAGGGAAGTAGTTCTGAAGGAAGATGGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | CAGAGCTGTGTGGGTGAAGCACATTTCAACTTGAATTCTCTCATCAATGGCGATTTTTCTCCCAACACCTaGCATGGAGTAAGTGGGTTG | + |
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Preference number: 2 (lower is better) Translates to: QSCVGEAHFNLNSLINGDFSPNT*HGVSGL Trigger: CAACCCACTTACTCCATGGCAGGTGTTGGGAGAAAA...ATCGCCATTGATGAGAGAATTCAAGTTGAAATGTGCTTCACCCACACAGCTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | ATGGCAATGCAGCAACAAGACTCCAGGCTTAGGGCATGCTCATTAAAGATCTTCCTGGAGAGCACATACTaGGAATGTTTGGATATTCCT | + |
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Preference number: 2 (lower is better) Translates to: MAMQQQDSRLRACSLKIFLESTY*ECLDIP Trigger: AGGAATATCCAAACATTCCCAGTATGTGCTCTCCAG...GAAGATCTTTAATGAGCATGCCCTAAGCCTGGAGTCTTGTTGCTGCATTGCCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | ATGGCAATGCAGCAACAAGACTCCAGGCTTAGGGCATGCTCATTAAAGATCTTCTCTGAAGAAGTTCCTTaGCATTCAAGTACAGTCAAC | + |
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Preference number: 2 (lower is better) Translates to: MAMQQQDSRLRACSLKIFSEEVP*HSSTVN Trigger: GTTGACTGTACTTGAATGTCAAGGAACTTCTTCAGA...GAAGATCTTTAATGAGCATGCCCTAAGCCTGGAGTCTTGTTGCTGCATTGCCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAAGGCAGAGTCAAGCAATaGACACTGTCAAAAGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKGRVKQ*TLSKVA Trigger: TGCCACTTTTGACAGTGTTCATTGCTTGACTCTGCC...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGACATAAATCCAATGTTTCACCAACAGAGCAAAGTACAATGACACATCCCCACCGTTATTCCTTAGAGTaGGATTCAGGGTTCTGGACA | + |
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Preference number: 2 (lower is better) Translates to: RHKSNVSPTEQSTMTHPHRYSLE*DSGFWT Trigger: TGTCCAGAACCCTGAATCCCACTCTAAGGAATAACG...GTGGGGATGTGTCATTGTACTTTGCTCTGTTGGTGAAACATTGGATTTATGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | ATGGCAATGCAGCAACAAGACTCCAGGCTTAGGGCATGCTCATTAAAGATCTTCCATACTGGGAATGTTTaGATATTCCTCCTGCATATT | + |
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Preference number: 2 (lower is better) Translates to: MAMQQQDSRLRACSLKIFHTGNV*IFLLHI Trigger: AATATGCAGGAGGAATATCCAAACATTCCCAGTATG...GAAGATCTTTAATGAGCATGCCCTAAGCCTGGAGTCTTGTTGCTGCATTGCCAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAACTGCCATGGAGTAAGTaGGTTGTTGAGTTGATGATT | + |
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Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKLPWSK*VVELMI Trigger: AATCATCAACTCAACAACCCACTTACTCCATGGCAG...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGAACATCCCTAGTGATGAGTACTGAGAGACTATCACTTGCCAGTTGTTTAGCCTATTCTGAGAAACCATaGTTGATGAACAATGAGCTC | + |
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Preference number: 2 (lower is better) Translates to: RTSLVMSTERLSLASCLAYSEKP*LMNNEL Trigger: GAGCTCATTGTTCATCAACCATGGTTTCTCAGAATA...GGCTAAACAACTGGCAAGTGATAGTCTCTCAGTACTCATCACTAGGGATGTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAAGAACACTGTCAAAAGTaGCATGTGTTTATAGTCACG | + |
|
Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKEHCQK*HVFIVT Trigger: CGTGACTATAAACACATGCCACTTTTGACAGTGTTC...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAATTGATGATTTCTCAATaGTCACAAAAAGCAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKLMISQ*SQKAAS Trigger: GGAAGCTGCTTTTTGTGAGCATTGAGAAATCATCAA...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAAAAACTGAATTTACAATaGAAATCCCCACTCCAATCC | + |
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Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKKLNLQ*KSPLQS Trigger: GGATTGGAGTGGGGATTTCCATTGTAAATTCAGTTT...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 39% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CCA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAAATCTTACATCCTATATaGCACAACTTGAATTCACAG | + |
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Preference number: 2 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKILHPI*HNLNSQ Trigger: CTGTGAATTCAAGTTGTGCCATATAGGATGTAAGAT...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR GCA 90 bp | GCACACAGACATAAATCCAATGTTTCACCAACAGAGCAAAGTACAATGACACATGATTATATGCTGCCTTaGTTTAGAGAGAACAATTCA | + |
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Preference number: 2 (lower is better) Translates to: AHRHKSNVSPTEQSTMTHDYMLP*FRENNS Trigger: TGAATTGTTCTCTCTAAAGCAAGGCAGCATATAATC...ATGTGTCATTGTACTTTGCTCTGTTGGTGAAACATTGGATTTATGTCTGTGTGC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR TCA 90 bp | CACATGCTCTATGTACTGCTTTTGACAAATAAGACTTCCTGTGAAGTTGTATTTATGGTTGATGAACAATaGGCTCTTAGGAGATTCTTA | + |
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Preference number: 2 (lower is better) Translates to: HMLYVLLLTNKTSCEVVFMVDEQ*ALRRFL Trigger: TAAGAATCTCCTAAGAGCTCATTGTTCATCAACCAT...AAATACAACTTCACAGGAAGTCTTATTTGTCAAAAGCAGTACATAGAGCATGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR GCA 72 bp | CATCCCACCACTACTGCAGCAAGCTCTAGACTACCCTaGAAGTGTGGGGTGAGGGGACTCTCAGGCCTTCCT | + |
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Preference number: 3 (lower is better) Translates to: HPTTTAASSRLP*KCGVRGLSGLP Trigger: AGGAAGGCCTGAGAGTCCCCTCACCCCACACTTGCAGGGTAGTCTAGAGCTTGCTGCAGTAGTGGTGGGATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 72 bp | GAACTTCACCCAGGCACGAGTAAGGACTTTGGTCTTTaGTTATGTGGATGGTGGTGGCAAGGAGCTGAACCA | + |
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Preference number: 3 (lower is better) Translates to: ELHPGTSKDFGL*LCGWWWQGAEP Trigger: TGGTTCAGCTCCTTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTGAAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | CACCCAGGCACGAGTAAGGACTTTGGTCTTTGGTTATGTGGATGGTGGTGGCAATTTGAAGACTCAATTTaGAGGCTTGGGCAATTAGGT | + |
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Preference number: 3 (lower is better) Translates to: HPGTSKDFGLWLCGWWWQFEDSI*RLGQLG Trigger: ACCTAATTGCCCAAGCCTCAAAATTGAGTCTTCAAA...TTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR TCA 72 bp | AGTACTGAGAGACTATCACTTGCCAGTTGTTTAGCCTaGATGGCAATGCAGCAACAAGACTCCAGGCTTAGG | + |
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Preference number: 3 (lower is better) Translates to: STERLSLASCLA*MAMQQQDSRLR Trigger: CCTAAGCCTGGAGTCTTGTTGCTGCATTGCCATTCAGGCTAAACAACTGGCAAGTGATAGTCTCTCAGTACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 72 bp | CCTTCCTCACTAGCCCTTTTCTCCCAACACCTGCCATaGAGTAAGTGGGTTGTTGAGTTGATGATTTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: PSSLALFSQHLP*SKWVVELMISQ Trigger: TTGAGAAATCATCAACTCAACAACCCACTTACTCCATGGCAGGTGTTGGGAGAAAAGGGCTAGTGAGGAAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | CCCCATCTTCCTTCAGAACTACTTCCCTTGGCCAGAAACGGGTGTGATTGTTTCTTAAAGATCTTCATTTaGCCCCTTCAGGATACAGCT | + |
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Preference number: 3 (lower is better) Translates to: PHLPSELLPLARNGCDCFLKIFI*PLQDTA Trigger: AGCTGTATCCTGAAGGGGCAAAATGAAGATCTTTAA...GAAACAATCACACCCGTTTCTGGCCAAGGGAAGTAGTTCTGAAGGAAGATGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR TCA 72 bp | TACTCCAGAGCTGTGTGGGTGAAGCACATTTCAACTTaGATTCTCTCATCAATGGCGATTGTCCACACCAAG | + |
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Preference number: 3 (lower is better) Translates to: YSRAVWVKHIST*ILSSMAIVHTK Trigger: CTTGGTGTGGACAATCGCCATTGATGAGAGAATTCAAGTTGAAATGTGCTTCACCCACACAGCTCTGGAGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 72 bp | CTAGCCCTTTTCTCCCAACACCTGCCATGGAGTAAGTaGGTTGTTGAGTTGATGATTTCTCAATGCTCACAA | + |
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Preference number: 3 (lower is better) Translates to: LALFSQHLPWSK*VVELMISQCSQ Trigger: TTGTGAGCATTGAGAAATCATCAACTCAACAACCCACTTACTCCATGGCAGGTGTTGGGAGAAAAGGGCTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | AGAACATCCCTAGTGATGAGTACTGAGAGACTATCACTTGCCAGTTGTTTAGCCGAAGCACATTTCAACTaGAATTCTCTCATCAATGGC | + |
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Preference number: 3 (lower is better) Translates to: RTSLVMSTERLSLASCLAEAHFN*NSLING Trigger: GCCATTGATGAGAGAATTCAAGTTGAAATGTGCTTC...GGCTAAACAACTGGCAAGTGATAGTCTCTCAGTACTCATCACTAGGGATGTTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR GCA 72 bp | TGGAGTAAGTGGGTTGTTGAGTTGATGATTTCTCAATaGTCACAAAAAGCAGCTTCCATAAGAAGAGCTGTG | + |
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Preference number: 3 (lower is better) Translates to: WSKWVVELMISQ*SQKAASIRRAV Trigger: CACAGCTCTTCTTATGGAAGCTGCTTTTTGTGAGCATTGAGAAATCATCAACTCAACAACCCACTTACTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | TATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAATGAGGAACTTCACCGCACGAGTAAGGACTTaGGTCTTTGGTTATGTGGAT | + |
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Preference number: 3 (lower is better) Translates to: YSELQGNLHIPAKMRNFTARVRT*VFGYVD Trigger: ATCCACATAACCAAAGACCAAAGTCCTTACTCGTGC...GGTGAAGTTCCTCATTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | AGACATAAATCCAATGTTTCACCAACAGAGCAAAGTACAATGACACATCCCCACAAGTGGGTTGTTGAGTaGATGATTTCTCAATGCTCA | + |
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Preference number: 3 (lower is better) Translates to: RHKSNVSPTEQSTMTHPHKWVVE*MISQCS Trigger: TGAGCATTGAGAAATCATCAACTCAACAACCCACTT...GTGGGGATGTGTCATTGTACTTTGCTCTGTTGGTGAAACATTGGATTTATGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR-3UTR CAA 90 bp | AGGGTAAGCCCTACTATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAATTGACAGTTTTGGAATaGTATAGAATACACAGTGCC | + |
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Preference number: 3 (lower is better) Translates to: RVSPTIVNYKEIYTYQPKLTVLE*YRIHSA Trigger: GGCACTGTGTATTCTATACAATTCCAAAACTGTCAA...TTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATAGTAGGGCTTACCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR TCA 72 bp | GCCAGAGCCACAAGCACATGCTCTATGTACTGCTTTTaGCAAATAAGACTTCCTGTGAAGTTGTATTTAATT | + |
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Preference number: 3 (lower is better) Translates to: ARATSTCSMYCF*QIRLPVKLYLI Trigger: AATTAAATACAACTTCACAGGAAGTCTTATTTGTCAAAAGCAGTACATAGAGCATGTGCTTGTGGCTCTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR TCA 72 bp | CAATTAGGTAAATGCTTTGTAGGCAGAGTCAAGCAATaGACACTGTCAAAAGTGGCATGTGTTTATAGTCAC | + |
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Preference number: 3 (lower is better) Translates to: QLGKCFVGRVKQ*TLSKVACVYSH Trigger: GTGACTATAAACACATGCCACTTTTGACAGTGTTCATTGCTTGACTCTGCCTACAAAGCATTTACCTAATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 72 bp | CATTCAGAACACTGGAGAGCACATACTGGGAATGTTTaGATATTCCTCCTGCATATTTATAGTTGGATTTTT | + |
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Preference number: 3 (lower is better) Translates to: HSEHWRAHTGNV*IFLLHIYSWIF Trigger: AAAAATCCAACTATAAATATGCAGGAGGAATATCCAAACATTCCCAGTATGTGCTCTCCAGTGTTCTGAATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CCA 72 bp | AGATTCCCTTTTCTCCTTATAACTGAGGTTCTATTGTaGAGGCAAAGCAATACTTTTATCTTACATCCTATA | + |
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Preference number: 3 (lower is better) Translates to: RFPFLLITEVLL*RQSNTFILHPI Trigger: TATAGGATGTAAGATAAAAGTATTGCTTTGCCTCCACAATAGAACCTCAGTTATAAGGAGAAAAGGGAATCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR CCA 90 bp | CCCCATCTTCCTTCAGAACTACTTCCCTTGGCCAGAAACGGGTGTGATTGTTTCCGGTGGCGGCGACGGTaGTGGTGGGAGAGCCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: PHLPSELLPLARNGCDCFRWRRR*WWESLA Trigger: AGCCAGGCTCTCCCACCACCACCGTCGCCGCCACCG...GAAACAATCACACCCGTTTCTGGCCAAGGGAAGTAGTTCTGAAGGAAGATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR GCA 90 bp | CCCCATCTTCCTTCAGAACTACTTCCCTTGGCCAGAAACGGGTGTGATTGTTTCTGCCACAGCCATTCGTaGACCTGCCGCGAGTACTCG | + |
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Preference number: 4 (lower is better) Translates to: PHLPSELLPLARNGCDCFCHSHS*TCREYS Trigger: CGAGTACTCGCGGCAGGTGCACGAATGGCTGTGGCA...GAAACAATCACACCCGTTTCTGGCCAAGGGAAGTAGTTCTGAAGGAAGATGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR GCA 90 bp | AGAACATCCCTAGTGATGAGTACTGAGAGACTATCACTTGCCAGTTGTTTAGCCAGTCCGCGCAGGGGCTaGAGAACCCACCCTGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: RTSLVMSTERLSLASCLASPRRG*RTHPGP Trigger: GGGACCAGGGTGGGTTCTGCAGCCCCTGCGCGGACT...GGCTAAACAACTGGCAAGTGATAGTCTCTCAGTACTCATCACTAGGGATGTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR GCA 90 bp | AGACATAAATCCAATGTTTCACCAACAGAGCAAAGTACAATGACACATCCCCACCCGTCTCCCGGCGCTTaGGGAGCTCGCACTGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: RHKSNVSPTEQSTMTHPHPSPGA*GARTAA Trigger: AGCCGCAGTGCGAGCTCCGCAAGCGCCGGGAGACGG...GTGGGGATGTGTCATTGTACTTTGCTCTGTTGGTGAAACATTGGATTTATGTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR CCA 90 bp | ATTCAGAACACTGGAGAGCACATACTGGGAATGTTTGGATATTCCTCCTGCATAGGTGGTGGGAGAGCCTaGCTCGGAAGGGACCGGCTC | + |
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Preference number: 4 (lower is better) Translates to: IQNTGEHILGMFGYSSCIGGGRA*LGRDRL Trigger: GAGCCGGTCCCTTCCGAGCCAGGCTCTCCCACCACC...TATGCAGGAGGAATATCCAAACATTCCCAGTATGTGCTCTCCAGTGTTCTGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS-3UTR GCA 90 bp | TATAGTGAACTACAAGGAAATCTACACATACCAGCCAAAATGAGGAACTTCACCAGCCATTCGTGCACCTaGCGCGAGTACTCGCGCGCG | + |
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Preference number: 4 (lower is better) Translates to: YSELQGNLHIPAKMRNFTSHSCT*REYSRA Trigger: CGCGCGCGAGTACTCGCGGCAGGTGCACGAATGGCT...GGTGAAGTTCCTCATTTTGGCTGGTATGTGTAGATTTCCTTGTAGTTCACTATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | AAAATGAGGAACTTCACCCAGGCACGAGTAAGGACTTaGGTCTTTGGTTATGTGGATGGTGGTGGCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: KMRNFTQARVRT*VFGYVDGGGKE Trigger: CTCCTTGCCACCACCATCCACATAACCAAAGACCAAAGTCCTTACTCGTGCCTGGGTGAAGTTCCTCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | TATGTGGATGGTGGTGGCAAGGAGCTGAACCAGTACTaGTTTAGGAATACTGTTGATCTAGGAACCGTCCTC | + |
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Preference number: 4 (lower is better) Translates to: YVDGGGKELNQY*FRNTVDLGTVL Trigger: GAGGACGGTTCCTAGATCAACAGTATTCCTAAACAAGTACTGGTTCAGCTCCTTGCCACCACCATCCACATA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | TCCAGGCTTAGGGCATGCTCATTAAAGATCTTCATTTaGCCCCTTCAGGATACAGCTTCGGCATGGAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: SRLRACSLKIFI*PLQDTASAWKN Trigger: ATTTTTCCATGCCGAAGCTGTATCCTGAAGGGGCAAAATGAAGATCTTTAATGAGCATGCCCTAAGCCTGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | TGCCAGAGCCACAAGCACATGCTCTATGTACTGCTTTaGACAAATAAGACTTCCTGTGAAGTTGTATTTAAT | + |
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Preference number: 4 (lower is better) Translates to: CQSHKHMLYVLL*TNKTSCEVVFN Trigger: ATTAAATACAACTTCACAGGAAGTCTTATTTGTCAAAAGCAGTACATAGAGCATGTGCTTGTGGCTCTGGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | GCCAGATTCCCTTTTCTCCTTATAACTGAGGTTCTATaGTGGAGGCAAAGCAATACTTTTATCTTACATCCT | + |
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Preference number: 4 (lower is better) Translates to: ARFPFLLITEVL*WRQSNTFILHP Trigger: AGGATGTAAGATAAAAGTATTGCTTTGCCTCCACAATAGAACCTCAGTTATAAGGAGAAAAGGGAATCTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| 3UTR CAA 72 bp | AGCAATACTTTTATCTTACATCCTATATGGCACAACTaGAATTCACAGCTAGATCTAAAGAACTTGTCGAGT | + |
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Preference number: 4 (lower is better) Translates to: SNTFILHPIWHN*NSQLDLKNLSS Trigger: ACTCGACAAGTTCTTTAGATCTAGCTGTGAATTCAAGTTGTGCCATATAGGATGTAAGATAAAAGTATTGCT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS GCA 90 bp | TCTACCTGCCTGCCGCCCGGTGTCGCTGGCAGTCCGCGCAGGGGCTaGAGAACCCACCCTGGTCCCGGGGGCCGCCCGGGCCGATGGCTG | + |
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Preference number: 5 (lower is better) Translates to: STCLPPGVAGSPRRG*RTHPGPGGRPGRWL Trigger: CAGCCATCGGCCCGGGCGGCCCCCGGGACCAGGGTGGGTTCTGCAGCCCCTGCGCGGACTGCCAGCGACACCGGGCGGCAGGCAGGTAGA 77% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS CCA 90 bp | GCGACGGTGGTGGTGGGAGAGCCTGGCTCGGAAGGGACCGGCTCGTaGTCCCCGCCACTGCCATCCTGCTCCGGAGGGCGGCTCCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: ATVVVGEPGSEGTGS*SPPLPSCSGGRLRA Trigger: AGCCCGGAGCCGCCCTCCGGAGCAGGATGGCAGTGGCGGGGACCACGAGCCGGTCCCTTCCGAGCCAGGCTCTCCCACCACCACCGTCGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS GCA 72 bp | CCGCCTCCGGAGGCTCCGCGCCCGTCTCCCGGCGCTTaGGGAGCTCGCACTGCGGCTCGGGCTCCGACACTG | + |
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Preference number: 6 (lower is better) Translates to: PPPEAPRPSPGA*GARTAARAPTL Trigger: CAGTGTCGGAGCCCGAGCCGCAGTGCGAGCTCCGCAAGCGCCGGGAGACGGGCGCGGAGCCTCCGGAGGCGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS CCA 72 bp | CGCTGGCAGTCCGCGCAGGGGCTGCAGAACCCACCCTaGTCCCGGGGGCCGCCCGGGCCGATGGCTGCACGT | + |
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Preference number: 6 (lower is better) Translates to: RWQSAQGLQNPP*SRGPPGPMAAR Trigger: ACGTGCAGCCATCGGCCCGGGCGGCCCCCGGGACCAGGGTGGGTTCTGCAGCCCCTGCGCGGACTGCCAGCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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| CDS GCA 72 bp | CTGGCTCGGAAGGGACCGGCTCGTGGTCCCCGCCACTaGCATCCTGCTCCGGAGGGCGGCTCCGGGCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: LARKGPARGPRH*HPAPEGGSGLP Trigger: AGGAAGCCCGGAGCCGCCCTCCGGAGCAGGATGGCAGTGGCGGGGACCACGAGCCGGTCCCTTCCGAGCCAG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099547.4 |
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