Pregenerated sensors for FAM89B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024939Ensembl transcript IDs: ENSMUST00000099955.4, ENSMUST00000116558.3, ENSMUST00000161368.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAGCATAAAGACCTTAGCCTTTCTGGTCGTGGGTGGCTACAGAGGTaGGTTCTGGAGCCCTTGTCCCAGGCAATGAACCCCTGGGGCCAC | + |
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Preference number: 1 (lower is better) Translates to: QHKDLSLSGRGWLQR*VLEPLSQAMNPWGH Trigger: GTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGGCTAAGGTCTTTATGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR CCA 90 bp | CAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTaGGCACAGGCTGCAATCTTGACCGCTTTGCCTGATGGGTATAAT | + |
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Preference number: 1 (lower is better) Translates to: QARVHTCGRSGSPGH*AQAAILTALPDGYN Trigger: ATTATACCCATCAGGCAAAGCGGTCAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGCTGCAAGAGGCAGCCACATGTGGGAGAAGTaGAAGCCCAGGACACTGGGC | + |
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Preference number: 2 (lower is better) Translates to: TPGATGRDAAEPAAARGSHMWEK*KPRTLG Trigger: GCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTG...GCTGCCTCTTGCAGCTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | GTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGGGGTGGCTACAGAGGTaGGTTCTGGAGCCCTTGTCC | + |
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Preference number: 2 (lower is better) Translates to: VPGNEPLGPLVGMPLSQQGWLQR*VLEPLS Trigger: GGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCC...CTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATGAGTCTGGGGTACGGTaGGGGGTGGAGGGTCTGGGG | + |
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Preference number: 2 (lower is better) Translates to: GAHMWEKWKPRTLGTGCNESGVR*GVEGLG Trigger: CCCCAGACCCTCCACCCCTCACCGTACCCCAGACTC...ATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR CCA 90 bp | GTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGGGAAGCCCAGGACACTaGGCACAGGCTGCAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: VPGNEPLGPLVGMPLSQQGSPGH*AQAAIL Trigger: CAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCC...CTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | ATGCAAACGGGAGTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCGGGTACGGTGAGGGGTaGAGGGTCTGGGGGCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: MQTGVQDALGPTVRLRAGGYGEG*RVWGQA Trigger: AGCCTGCCCCCAGACCCTCCACCCCTCACCGTACCC...GCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCACTCCCGTTTGCAT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR CCA 90 bp | TCTGGAGCCCTTGTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGGGAAGCCCAGGACACTaGGCACAGGCTGCAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: SGALVPGNEPLGPLVGMPGSPGH*AQAAIL Trigger: CAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCC...CGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCCTTGCCCTCCTGAAGTaGGGTGAGGTGGTACCGGTA | + |
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Preference number: 2 (lower is better) Translates to: PFWSWVATEVGSGALVPGLALLK*GEVVPV Trigger: TACCGGTACCACCTCACCTCACTTCAGGAGGGCAAG...GCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | TCTGGAGCCCTTGTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCCTCCTGAAGTGAGGTaGGGTGGTACCGGTAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: SGALVPGNEPLGPLVGMPPPEVR*GGTGKR Trigger: TCTTTTACCGGTACCACCTCACCTCACTTCAGGAGG...CGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | ATGCAAACGGGAGTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCTGGTCACGGGCATTGTaGGTCTGGGGTACGGTGAGG | + |
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Preference number: 2 (lower is better) Translates to: MQTGVQDALGPTVRLRAGWSRAL*VWGTVR Trigger: CCTCACCGTACCCCAGACTCACAATGCCCGTGACCA...GCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCACTCCCGTTTGCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR GCA 90 bp | GTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGATTTGGAAAGCATCCTaGAACCACTGGTCACGGGCA | + |
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Preference number: 2 (lower is better) Translates to: VPGNEPLGPLVGMPLSQQIWKAS*NHWSRA Trigger: TGCCCGTGACCAGTGGTTGCAGGATGCTTTCCAAAT...CTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGCCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCGGGTGGCTACAGAGGTaGGTTCTGGAGCCCTTGTCC | + |
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Preference number: 2 (lower is better) Translates to: LAFLVVGGYRGGFWSPCPGWLQR*VLEPLS Trigger: GGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCC...GGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGGCTAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | CCACTGGTAGGGATGCCGCTGAGCCAGCAGCTGCAAGAGGCAGCAAAAGACGAAGGGTGGCTACAGAGGTaGGTTCTGGAGCCCTTGTCC | + |
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Preference number: 2 (lower is better) Translates to: PLVGMPLSQQLQEAAKDEGWLQR*VLEPLS Trigger: GGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCC...TTCGTCTTTTGCTGCCTCTTGCAGCTGCTGGCTCAGCGGCATCCCTACCAGTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | TTAGCCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCCTTGCCCTCCTGAAGTaGGGTGAGGTGGTACCGGTA | + |
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Preference number: 2 (lower is better) Translates to: LAFLVVGGYRGGFWSPCPLALLK*GEVVPV Trigger: TACCGGTACCACCTCACCTCACTTCAGGAGGGCAAG...GGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGGCTAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCAACTTGCCCTCCTGAAGTaGGGTGAGGTGGTACCGGTA | + |
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Preference number: 2 (lower is better) Translates to: FLVVGGYRGGFWSPCPRQLALLK*GEVVPV Trigger: TACCGGTACCACCTCACCTCACTTCAGGAGGGCAAG...TTGCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGGGAAGCCCAGGACACTaGGCACAGGCTGCAATCTTG | + |
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Preference number: 2 (lower is better) Translates to: KLGCTHVGEVEAQDTGHRGSPGH*AQAAIL Trigger: CAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCC...CCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | GCCACTGGTAGGGATGCCGCTGAGCCAGCAGCTGCAAGAGGCAGCAAAAGACGACTGAAGGGCAAGTTTTaGGCCTTTTGTATGGGTGCG | + |
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Preference number: 2 (lower is better) Translates to: ATGRDAAEPAAARGSKRRLKGKF*AFCMGA Trigger: CGCACCCATACAAAAGGCTCAAAACTTGCCCTTCAG...TCGTCTTTTGCTGCCTCTTGCAGCTGCTGGCTCAGCGGCATCCCTACCAGTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | GCCAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACCTGAAGGGCAAGTTTTaGGCCTTTTGTATGGGTGCG | + |
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Preference number: 2 (lower is better) Translates to: AKLGCTHVGEVEAQDTGHLKGKF*AFCMGA Trigger: CGCACCCATACAAAAGGCTCAAAACTTGCCCTTCAG...GTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | CCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCAGACTAAGGACTTGCTaGAGGGCAAGTTTTGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: PFWSWVATEVGSGALVPGRLRTC*RASFEP Trigger: AGGCTCAAAACTTGCCCTTCAGCAAGTCCTTAGTCT...GCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR GCA 90 bp | CCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGCACACATGTGGGAGAAGTTCCCAGTCCCAGAGATaGAAACGGGAGTGCAAGACG | + |
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Preference number: 2 (lower is better) Translates to: PTVRLRAGQARVHTCGRSSQSQR*KRECKT Trigger: CGTCTTGCACTCCCGTTTGCATCTCTGGGACTGGGA...ACTTCTCCCACATGTGTGCACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | GGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTGAAGGGCAAGTTTTaGGCCTTTTGTATGGGTGCG | + |
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Preference number: 2 (lower is better) Translates to: GAHMWEKWKPRTLGTGCNLKGKF*AFCMGA Trigger: CGCACCCATACAAAAGGCTCAAAACTTGCCCTTCAG...ATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | GCCAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGACTAAGGACTTGCTaGAGGGCAAGTTTTGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: AKLGCTHVGEVEAQDTGHRLRTC*RASFEP Trigger: AGGCTCAAAACTTGCCCTTCAGCAAGTCCTTAGTCT...GTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCAAAAGACGAAAAAGAGATaGGAGCTAGGCACTCATCCC | + |
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Preference number: 2 (lower is better) Translates to: FLVVGGYRGGFWSPCPRQKTKKR*ELGTHP Trigger: GGGATGAGTGCCTAGCTCTCATCTCTTTTTCGTCTT...TTGCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGTCAGCTTTCAAAGGCTaGTTTGGAAAGCATCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: KLGCTHVGEVEAQDTGHRSAFKG*FGKHPA Trigger: TGCAGGATGCTTTCCAAATCAGCCTTTGAAAGCTGA...CCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR CCA 90 bp | AGACTAAGGGCTGGCCAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCATTTCAAAGGCTGATTTaGAAAGCATCCTGCAACCAC | + |
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Preference number: 2 (lower is better) Translates to: RLRAGQARVHTCGRSGSPFQRLI*KASCNH Trigger: GTGGTTGCAGGATGCTTTCCAAATCAGCCTTTGAAA...TGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTGGCCAGCCCTTAGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| 3UTR-3UTR TCA 90 bp | TTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCAGCATAAAGACCTTAGCCCTCCTGAAGTGAGGTaGGGTGGTACCGGTAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: FPPRNWPLNLNIQHKDLSPPEVR*GGTGKR Trigger: TCTTTTACCGGTACCACCTCACCTCACTTCAGGAGG...GCTAAGGTCTTTATGCTGGATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CCA 90 bp | ATTTTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCAGCATAAAGACCTTTACAGAGGTGGGTTCTaGAGCCCTTGTCCCAGGCAA | + |
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Preference number: 2 (lower is better) Translates to: IFPPRNWPLNLNIQHKDLYRGGF*SPCPRQ Trigger: TTGCCTGGGACAAGGGCTCCAGAACCCACCTCTGTA...AAGGTCTTTATGCTGGATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAAAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCAGCATAAAGACCTTAGCAAGACGAAAAAGAGATaGGAGCTAGGCACTCATCCC | + |
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Preference number: 2 (lower is better) Translates to: FPPRNWPLNLNIQHKDLSKTKKR*ELGTHP Trigger: GGGATGAGTGCCTAGCTCTCATCTCTTTTTCGTCTT...GCTAAGGTCTTTATGCTGGATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR TCA 90 bp | ATGCTGAAATTATTTATTTTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCCTCCTGAAGTGAGGTaGGGTGGTACCGGTAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: MLKLFIFPPRNWPLNLNIPPEVR*GGTGKR Trigger: TCTTTTACCGGTACCACCTCACCTCACTTCAGGAGG...GATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAAAATAAATAATTTCAGCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR TCA 72 bp | TACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCAATaGACCCCTGGGGCCACTGGTAGGGATGCCGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: YRGGFWSPCPRQ*TPGATGRDAAE Trigger: CTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGAACCCACCTCTGTA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | GTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGGCTGAAGGGCAAGTTTaGAGCCTTTTGTATGGGTGC | + |
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Preference number: 3 (lower is better) Translates to: VPGNEPLGPLVGMPLSQQAEGQV*SLLYGC Trigger: GCACCCATACAAAAGGCTCAAAACTTGCCCTTCAGC...CTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR TCA 72 bp | GTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTTaGCCGCTTTGCCTGATGGGTATAATGCCTTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: VEAQDTGHRLQS*PLCLMGIMPCP Trigger: AGGGCAAGGCATTATACCCATCAGGCAAAGCGGTCAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | GGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATGCTGAAGGGCAAGTTTaGAGCCTTTTGTATGGGTGC | + |
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Preference number: 3 (lower is better) Translates to: GAHMWEKWKPRTLGTGCNAEGQV*SLLYGC Trigger: GCACCCATACAAAAGGCTCAAAACTTGCCCTTCAGC...ATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR CCA 72 bp | ATCCAGCATAAAGACCTTAGCCTTTCTGGTCGTGGGTaGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: IQHKDLSLSGRG*LQRWVLEPLSQ Trigger: CTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGGCTAAGGTCTTTATGCTGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | ACGGGAGTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTCAAGTTTTGAGCCTTTaGTATGGGTGCGTTCCTATC | + |
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Preference number: 3 (lower is better) Translates to: TGVQDALGPTVRLRAGQAQVLSL*YGCVPI Trigger: GATAGGAACGCACCCATACAAAAGGCTCAAAACTTG...AGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCACTCCCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | GTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGCAAGTTTTGAGCCTTTaGTATGGGTGCGTTCCTATC | + |
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Preference number: 3 (lower is better) Translates to: VQDALGPTVRLRAGQARVQVLSL*YGCVPI Trigger: GATAGGAACGCACCCATACAAAAGGCTCAAAACTTG...CACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR TCA 72 bp | CTGATGGGTATAATGCCTTGCCCTCCTGAAGTGAGGTaGGGTGGTACCGGTAAAAGAGCAGGCACTGTAGAC | + |
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Preference number: 3 (lower is better) Translates to: LMGIMPCPPEVR*GGTGKRAGTVD Trigger: GTCTACAGTGCCTGCTCTTTTACCGGTACCACCTCACCTCACTTCAGGAGGGCAAGGCATTATACCCATCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | TGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTCAAGTTTTGAGCCTTTaGTATGGGTGCGTTCCTATC | + |
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Preference number: 3 (lower is better) Translates to: CTHVGEVEAQDTGHRLQSQVLSL*YGCVPI Trigger: GATAGGAACGCACCCATACAAAAGGCTCAAAACTTG...AGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR-3UTR CAA 90 bp | TGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTTGACCGCTTTCTTTCAAAGGCTGATTaGGAAAGCATCCTGCAACCA | + |
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Preference number: 3 (lower is better) Translates to: WEKWKPRTLGTGCNLDRFLSKAD*ESILQP Trigger: TGGTTGCAGGATGCTTTCCAAATCAGCCTTTGAAAG...AAAGCGGTCAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| CDS-3UTR TCA 90 bp | GCTGGCCAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGAGTCTGGGGTACGGTaGGGGGTGGAGGGTCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: AGQARVHTCGRSGSPGHWESGVR*GVEGLG Trigger: CCCCAGACCCTCCACCCCTCACCGTACCCCAGACTC...CCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTGGCCAGC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR GCA 90 bp | GTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGGCCCCACCATCTCCTTaGGCAGCGCGGCTAGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: VQDALGPTVRLRAGQARVAPPSP*AARLVQ Trigger: CTGCACTAGCCGCGCTGCGCAAGGAGATGGTGGGGC...CACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099955.4 |
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| CDS-3UTR CCA 90 bp | AAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGGGGTACGGTGAGGGGTaGAGGGTCTGGGGGCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: KLGCTHVGEVEAQDTGHRGYGEG*RVWGQA Trigger: AGCCTGCCCCCAGACCCTCCACCCCTCACCGTACCC...CCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR TCA 90 bp | TGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTGAGTCTGGGGTACGGTaGGGGGTGGAGGGTCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: CTHVGEVEAQDTGHRLQSESGVR*GVEGLG Trigger: CCCCAGACCCTCCACCCCTCACCGTACCCCAGACTC...AGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR TCA 90 bp | CCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCTGGTCACGGGCATTGTaGGTCTGGGGTACGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: PFWSWVATEVGSGALVPGWSRAL*VWGTVR Trigger: CCTCACCGTACCCCAGACTCACAATGCCCGTGACCA...GCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR CCA 90 bp | AAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCAGGCCGGCATCAGGTaGGTAGGAGCTGTCCGAGTG | + |
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Preference number: 4 (lower is better) Translates to: KLGCTHVGEVEAQDTGHRQAGIR*VGAVRV Trigger: CACTCGGACAGCTCCTACCCACCTGATGCCGGCCTG...CCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| 3UTR CAA 72 bp | CCAGTCCCAGAGATGCAAACGGGAGTGCAAGACGCTTaGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: PVPEMQTGVQDA*GPTVRLRAGQA Trigger: AGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCACTCCCGTTTGCATCTCTGGGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR TCA 90 bp | TGGGAGAAGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTTGACCGCTTTTGGTCACGGGCATTGTaGGTCTGGGGTACGGTGAGG | + |
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Preference number: 4 (lower is better) Translates to: WEKWKPRTLGTGCNLDRFWSRAL*VWGTVR Trigger: CCTCACCGTACCCCAGACTCACAATGCCCGTGACCA...AAAGCGGTCAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACTTCTCCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR GCA 90 bp | GTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGTCAGTTCGTCGTGGATaGGGCTCCGTTGGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: VQDALGPTVRLRAGQARVSVRRG*GSVGCR Trigger: TCTACAGCCAACGGAGCCGCATCCACGACGAACTGA...CACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CCA 90 bp | GTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGTACAGGCCCCACAGCTaGCACAACAGGGACATATCC | + |
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Preference number: 4 (lower is better) Translates to: VQDALGPTVRLRAGQARVYRPHS*HNRDIS Trigger: GGATATGTCCCTGTTGTGCCAGCTGTGGGGCCTGTA...CACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 |
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| CDS-3UTR GCA 90 bp | GGTTCTGGAGCCCTTGTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGATTTGGAAAGCATCCTaGAACCACTGGTCACGGGCA | + |
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Preference number: 4 (lower is better) Translates to: GSGALVPGNEPLGPLVGMIWKAS*NHWSRA Trigger: TGCCCGTGACCAGTGGTTGCAGGATGCTTTCCAAAT...CATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR GCA 90 bp | AGACTAAGGGCTGGCCAAGCTAGGGTGCACACATGTGGGAGAAGTGGAAGCCCATCAGTTCGTCGTGGATaGGGCTCCGTTGGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: RLRAGQARVHTCGRSGSPSVRRG*GSVGCR Trigger: TCTACAGCCAACGGAGCCGCATCCACGACGAACTGA...TGGGCTTCCACTTCTCCCACATGTGTGCACCCTAGCTTGGCCAGCCCTTAGTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| 3UTR CAA 72 bp | AGTGGAAGCCCAGGACACTGGGCACAGGCTGCAATCTaGACCGCTTTGCCTGATGGGTATAATGCCTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: SGSPGHWAQAAI*TALPDGYNALP Trigger: GGGCAAGGCATTATACCCATCAGGCAAAGCGGTCAAGATTGCAGCCTGTGCCCAGTGTCCTGGGCTTCCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CCA 90 bp | TTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCAGCATAAAGACCTTAGCCAGGCCGGCATCAGGTaGGTAGGAGCTGTCCGAGTG | + |
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Preference number: 4 (lower is better) Translates to: FPPRNWPLNLNIQHKDLSQAGIR*VGAVRV Trigger: CACTCGGACAGCTCCTACCCACCTGATGCCGGCCTG...GCTAAGGTCTTTATGCTGGATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000161368.2 |
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| CDS-3UTR CCA 90 bp | TTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCAGCATAAAGACCTTAGCTACAGGCCCCACAGCTaGCACAACAGGGACATATCC | + |
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Preference number: 4 (lower is better) Translates to: FPPRNWPLNLNIQHKDLSYRPHS*HNRDIS Trigger: GGATATGTCCCTGTTGTGCCAGCTGTGGGGCCTGTA...GCTAAGGTCTTTATGCTGGATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 |
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| CDS-3UTR GCA 90 bp | AGTTTTGAGCCTTTTGTATGGGTGCGTTCCTATCCACCTCAGCTTTCAAAGGCTTCAGTTCGTCGTGGATaGGGCTCCGTTGGCTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SFEPFVWVRSYPPQLSKASVRRG*GSVGCR Trigger: TCTACAGCCAACGGAGCCGCATCCACGACGAACTGA...AGCCTTTGAAAGCTGAGGTGGATAGGAACGCACCCATACAAAAGGCTCAAAACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| CDS CCA 90 bp | CGGCGCGGGCCCGCTGCAGAACCTGAGTTAGCAGATCCAGCGGCATaGCGAGGACCATCCGGGGCGCGGGCGGCACGACTCAGTTCGTCG | + |
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Preference number: 5 (lower is better) Translates to: RRGPAAEPELADPAA*RGPSGARAARLSSS Trigger: CGACGAACTGAGTCGTGCCGCCCGCGCCCCGGATGGTCCTCGCCATGCCGCTGGATCTGCTAACTCAGGTTCTGCAGCGGGCCCGCGCCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS TCA 90 bp | TGCAGAGTCGAGGTTAACCGGGCGGCGCGGGCCCGCTGCAGAACCTaGGTTAGCAGATCCAGCGGCATGGCGAGGACCATCCGGGGCGCG | + |
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Preference number: 5 (lower is better) Translates to: CRVEVNRAARARCRT*VSRSSGMARTIRGA Trigger: CGCGCCCCGGATGGTCCTCGCCATGCCGCTGGATCTGCTAACTCAGGTTCTGCAGCGGGCCCGCGCCGCCCGGTTAACCTCGACTCTGCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS GCA 90 bp | GAGGACCATCCGGGGCGCGGGCGGCACGACTCAGTTCGTCGTGGATaGGGCTCCGTTGGCTGTAGACACGCTCCAGCTCCCTCCACGAGC | + |
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Preference number: 5 (lower is better) Translates to: EDHPGRGRHDSVRRG*GSVGCRHAPAPSTS Trigger: GCTCGTGGAGGGAGCTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCACGACGAACTGAGTCGTGCCGCCCGCGCCCCGGATGGTCCTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CAA 90 bp | TCTGGAGCCCTTGTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGGTGGATGCGGCTCCGTaGGCTGTAGACACGCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: SGALVPGNEPLGPLVGMPVDAAP*AVDTLQ Trigger: CTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCAC...CGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGACAAGGGCTCCAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CAA 90 bp | GTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTAGGGTGAGCCCCACCATCTCCTaGCGCAGCGCGGCTAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: VQDALGPTVRLRAGQARVSPTIS*RSAASA Trigger: TGCACTAGCCGCGCTGCGCAAGGAGATGGTGGGGCT...CACCCTAGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000099955.4 |
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| CDS-3UTR CAA 90 bp | ACGGGAGTGCAAGACGCTTTGGGCCCCACAGTCAGACTAAGGGCTGGCCAAGCTGTGGATGCGGCTCCGTaGGCTGTAGACACGCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: TGVQDALGPTVRLRAGQAVDAAP*AVDTLQ Trigger: CTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCAC...AGCTTGGCCAGCCCTTAGTCTGACTGTGGGGCCCAAAGCGTCTTGCACTCCCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CAA 90 bp | GTCCCAGGCAATGAACCCCTGGGGCCACTGGTAGGGATGCCGCTGAGCCAGCAGGCACAAGCTCAGGTCTaGGCACAGATGCTTGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: VPGNEPLGPLVGMPLSQQAQAQV*AQMLVV Trigger: GACTACAAGCATCTGTGCCAAGACCTGAGCTTGTGC...CTGCTGGCTCAGCGGCATCCCTACCAGTGGCCCCAGGGGTTCATTGCCTGGGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CAA 90 bp | CCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCACAGACAACATCTCCTaGCGCAGCGCGGCTAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: PFWSWVATEVGSGALVPGTDNIS*RSAASA Trigger: TGCACTAGCCGCGCTGCGCAAGGAGATGTTGTCTGT...GCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000116558.3 |
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| CDS-3UTR CAA 90 bp | CCTTTCTGGTCGTGGGTGGCTACAGAGGTGGGTTCTGGAGCCCTTGTCCCAGGCGCACAAGCTCAGGTCTaGGCACAGATGCTTGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: PFWSWVATEVGSGALVPGAQAQV*AQMLVV Trigger: GACTACAAGCATCTGTGCCAAGACCTGAGCTTGTGC...GCCTGGGACAAGGGCTCCAGAACCCACCTCTGTAGCCACCCACGACCAGAAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS-3UTR CAA 90 bp | ATGCTGAAATTATTTATTTTCCCGCCCAGGAACTGGCCGCTAAACTTAAATATCCCCCACAGCATCTCCTaGCGCAGCGCGGCTAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: MLKLFIFPPRNWPLNLNIPHSIS*RSAASA Trigger: TGCACTAGCCGCGCTGCGCAAGGAGATGCTGTGGGG...GATATTTAAGTTTAGCGGCCAGTTCCTGGGCGGGAAAATAAATAATTTCAGCAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161368.2 |
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| CDS GCA 72 bp | CCGGGGCGCGGGCGGCACGACTCAGTTCGTCGTGGATaGGGCTCCGTTGGCTGTAGACACGCTCCAGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: PGRGRHDSVRRG*GSVGCRHAPAP Trigger: GGGAGCTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCACGACGAACTGAGTCGTGCCGCCCGCGCCCCGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS CAA 90 bp | CGGGGCGCGGGCGGCACGACTCAGTTCGTCGTGGATGCGGCTCCGTaGGCTGTAGACACGCTCCAGCTCCCTCCACGAGCCCCCACTAGC | + |
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Preference number: 6 (lower is better) Translates to: RGAGGTTQFVVDAAP*AVDTLQLPPRAPTS Trigger: GCTAGTGGGGGCTCGTGGAGGGAGCTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCACGACGAACTGAGTCGTGCCGCCCGCGCCCCG 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS TCA 72 bp | GAGGTTAACCGGGCGGCGCGGGCCCGCTGCAGAACCTaGGTTAGCAGATCCAGCGGCATGGCGAGGACCATC | + |
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Preference number: 6 (lower is better) Translates to: EVNRAARARCRT*VSRSSGMARTI Trigger: GATGGTCCTCGCCATGCCGCTGGATCTGCTAACTCAGGTTCTGCAGCGGGCCCGCGCCGCCCGGTTAACCTC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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| CDS CAA 72 bp | GGCGGCACGACTCAGTTCGTCGTGGATGCGGCTCCGTaGGCTGTAGACACGCTCCAGCTCCCTCCACGAGCC | + |
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Preference number: 6 (lower is better) Translates to: GGTTQFVVDAAP*AVDTLQLPPRA Trigger: GGCTCGTGGAGGGAGCTGGAGCGTGTCTACAGCCAACGGAGCCGCATCCACGACGAACTGAGTCGTGCCGCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099955.4 ENSMUST00000116558.3 ENSMUST00000161368.2 |
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