RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM89A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043068

Ensembl transcript IDs: ENSMUST00000055257.7

Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATGTGCCCGCAGACTGTCCACCATGAAGAGGCTGAAGGACTTTCTTaGAAGAAGAGAAACAGAGGCTGCCAGTCTGTGTTGACAGACCCC +
Preference number: 1 (lower is better)
Translates to: MCPQTVHHEEAEGLS*KKRNRGCQSVLTDP
Trigger: GGGGTCTGTCAACACAGACTGGCAGCCTCTGTTTCTCTTCTTGCAAGAAAGTCCTTCAGCCTCTTCATGGTGGACAGTCTGCGGGCACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR-3UTR GCA 90 bp TGTCACCTACAAAGAAGCCTGCTGAGCGCAGCCTCACCCGATGCCCGTGAAGGCGCTGAAGGACTTTCTTaGAAGAAGAGAAACAGAGGC +
Preference number: 2 (lower is better)
Translates to: CHLQRSLLSAASPDAREGAEGLS*KKRNRG
Trigger: GCCTCTGTTTCTCTTCTTGCAAGAAAGTCCTTCAGC...GCCTTCACGGGCATCGGGTGAGGCTGCGCTCAGCAGGCTTCTTTGTAGGTGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR-3UTR GCA 90 bp CACGCCAAAGAGGGCACAACACAGCTGTCACCTACAAAGAAGCCTGCTGAGCGCAAGAGAAACAGAGGCTaGCAGTCTGTGTTGACAGAC +
Preference number: 2 (lower is better)
Translates to: HAKEGTTQLSPTKKPAERKRNRG*QSVLTD
Trigger: GTCTGTCAACACAGACTGGCAGCCTCTGTTTCTCTT...GCGCTCAGCAGGCTTCTTTGTAGGTGACAGCTGTGTTGTGCCCTCTTTGGCGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR-3UTR TCA 90 bp TTAAGGCTTCGGGTAAGTACTGCTTGGAAACAATGTTTTCCAGCACTGAAGTTTCTCACCCGATGCCCGTaGAGGCTTTCCACACGGAAC +
Preference number: 2 (lower is better)
Translates to: LRLRVSTAWKQCFPALKFLTRCP*RLSTRN
Trigger: GTTCCGTGTGGAAAGCCTTCACGGGCATCGGGTGAG...AAACTTCAGTGCTGGAAAACATTGTTTCCAAGCAGTACTTACCCGAAGCCTTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR-3UTR GCA 90 bp TCTCTACCTATACCCGATGTCAGTTTTAGTAGTTGCAGAAAAGCAGTTGACCAGAAGTTAAACAAGTGGTaGATGTCCCCATGTGCCCGC +
Preference number: 2 (lower is better)
Translates to: SLPIPDVSFSSCRKAVDQKLNKW*MSPCAR
Trigger: GCGGGCACATGGGGACATGCACCACTTGTTTAACTT...CTGGTCAACTGCTTTTCTGCAACTACTAAAACTGACATCGGGTATAGGTAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR TCA 72 bp AAGAAGCCTGCTGAGCGCAGCCTCACCCGATGCCCGTaGAGGCTTTCCACACGGAACCCTTCAGTCAGAGCT +
Preference number: 3 (lower is better)
Translates to: KKPAERSLTRCP*RLSTRNPSVRA
Trigger: AGCTCTGACTGAAGGGTTCCGTGTGGAAAGCCTTCACGGGCATCGGGTGAGGCTGCGCTCAGCAGGCTTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR TCA 72 bp GGGCACAACACAGCTGTCACCTACAAAGAAGCCTGCTaGGCGCAGCCTCACCCGATGCCCGTGAAGGCTTTC +
Preference number: 3 (lower is better)
Translates to: GHNTAVTYKEAC*AQPHPMPVKAF
Trigger: GAAAGCCTTCACGGGCATCGGGTGAGGCTGCGCTCAGCAGGCTTCTTTGTAGGTGACAGCTGTGTTGTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR GCA 72 bp CACCCACAAGTTAAACAAGTGGTGCATGTCCCCATGTaGCCGCAGACTGTCCACCATGAAGAGGCTGAAGGA +
Preference number: 3 (lower is better)
Translates to: HPQVKQVVHVPM*PQTVHHEEAEG
Trigger: TCCTTCAGCCTCTTCATGGTGGACAGTCTGCGGGCACATGGGGACATGCACCACTTGTTTAACTTGTGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR TCA 72 bp GTTCCTGGAAAATCATTGATGCAGCTTTCAAATAAATaGGCAAAGGGGCTAACGGCTAAGCGGTGGCAAGAA +
Preference number: 3 (lower is better)
Translates to: VPGKSLMQLSNK*AKGLTAKRWQE
Trigger: TTCTTGCCACCGCTTAGCCGTTAGCCCCTTTGCTCATTTATTTGAAAGCTGCATCAATGATTTTCCAGGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
3UTR GCA 72 bp TTCTCTCTACCTATACCCGATGTCAGTTTTAGTAGTTaGAGAAAAGCAGTTGACCAGTGTGGCAGAATATTT +
Preference number: 3 (lower is better)
Translates to: FSLPIPDVSFSS*RKAVDQCGRIF
Trigger: AAATATTCTGCCACACTGGTCAACTGCTTTTCTGCAACTACTAAAACTGACATCGGGTATAGGTAGAGAGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp CACAGCTGTCACCTACAAAGAAGCCTGCTGAGCGCAGCCTCACCCGATGCCCGTCCTCCCGCCGCCGAGTaGAGCAGCCCGCTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: HSCHLQRSLLSAASPDARPPAAE*SSPLRL
Trigger: AAGCCTGAGCGGGCTGCTGCACTCGGCGGCGGGAGG...ACGGGCATCGGGTGAGGCTGCGCTCAGCAGGCTTCTTTGTAGGTGACAGCTGTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CCA 90 bp GTGCATGTCCCCATGTGCCCGCAGACTGTCCACCATGAAGAGGCTGAAGGACTTGCGCGGCGTCCAGGTTaGGGGGCTTGGTCCGCATCC +
Preference number: 4 (lower is better)
Translates to: VHVPMCPQTVHHEEAEGLARRPG*GAWSAS
Trigger: GGATGCGGACCAAGCCCCCCAACCTGGACGCCGCGC...AAGTCCTTCAGCCTCTTCATGGTGGACAGTCTGCGGGCACATGGGGACATGCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR TCA 90 bp GCAGCCTCACCCGATGCCCGTGAAGGCTTTCCACACGGAACCCTTCAGTCAGAGTGGATGCGCGACTTCTaGGCGTACAGCCGCTCCAGG +
Preference number: 4 (lower is better)
Translates to: AASPDAREGFPHGTLQSEWMRDF*AYSRSR
Trigger: CCTGGAGCGGCTGTACGCTCAGAAGTCGCGCATCCA...CTCTGACTGAAGGGTTCCGTGTGGAAAGCCTTCACGGGCATCGGGTGAGGCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp GTGCATGTCCCCATGTGCCCGCAGACTGTCCACCATGAAGAGGCTGAAGGACTTCTGGGAGAGCCATGGTaGTGCCCGTCCTGCAGAGAG +
Preference number: 4 (lower is better)
Translates to: VHVPMCPQTVHHEEAEGLLGEPW*CPSCRE
Trigger: CTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAG...AAGTCCTTCAGCCTCTTCATGGTGGACAGTCTGCGGGCACATGGGGACATGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CCA 90 bp CACGCCAAAGAGGGCACAACACAGCTGTCACCTACAAAGAAGCCTGCTGAGCGCAGACTGGAGGCTGCCTaGCACGCTCCCTTGTACTCC +
Preference number: 4 (lower is better)
Translates to: HAKEGTTQLSPTKKPAERRLEAA*HAPLYS
Trigger: GGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCT...GCGCTCAGCAGGCTTCTTTGTAGGTGACAGCTGTGTTGTGCCCTCTTTGGCGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CCA 90 bp CTGCTGAGCGCAGCCTCACCCGATGCCCGTGAAGGCTTTCCACACGGAACCCTTCCTTGTACTCCTGAATaGACTCGTAGAGGCTGTACA +
Preference number: 4 (lower is better)
Translates to: LLSAASPDAREGFPHGTLPCTPE*TRRGCT
Trigger: TGTACAGCCTCTACGAGTCCATTCAGGAGTACAAGG...AAGGGTTCCGTGTGGAAAGCCTTCACGGGCATCGGGTGAGGCTGCGCTCAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp TCTCTACCTATACCCGATGTCAGTTTTAGTAGTTGCAGAAAAGCAGTTGACCAGTACAGCCGCTCCAGGTaGCGCCAGCCACCCGCCGCG +
Preference number: 4 (lower is better)
Translates to: SLPIPDVSFSSCRKAVDQYSRSR*RQPPAA
Trigger: CGCGGCGGGTGGCTGGCGGCACCTGGAGCGGCTGTA...CTGGTCAACTGCTTTTCTGCAACTACTAAAACTGACATCGGGTATAGGTAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp TTTCCACACGGAACCCTTCAGTCAGAGCTTCCAGCAGGTGCTACTAATGGCATCGTCCAGACTGGAGGCTaGCTGGCACGCTCCCTTGTA +
Preference number: 4 (lower is better)
Translates to: FPHGTLQSELPAGATNGIVQTGG*LARSLV
Trigger: TACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGAC...GATGCCATTAGTAGCACCTGCTGGAAGCTCTGACTGAAGGGTTCCGTGTGGAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CCA 90 bp TTTCCACACGGAACCCTTCAGTCAGAGCTTCCAGCAGGTGCTACTAATGGCATCAGAGAGCCCTGCTCCTaGAAGTCCTCCTCATCGTCG +
Preference number: 4 (lower is better)
Translates to: FPHGTLQSELPAGATNGIREPCS*KSSSSS
Trigger: CGACGATGAGGAGGACTTCCAGGAGCAGGGCTCTCT...GATGCCATTAGTAGCACCTGCTGGAAGCTCTGACTGAAGGGTTCCGTGTGGAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CCA 90 bp CCAGCACTGAAGTTTACAATCAGAGTCTGTAACCACAAGCCACCATCTCATGGCTCCCTGGGAGAGCCATaGTGCTGCCCGTCCTGCAGA +
Preference number: 4 (lower is better)
Translates to: PALKFTIRVCNHKPPSHGSLGEP*CCPSCR
Trigger: TCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGA...GCCATGAGATGGTGGCTTGTGGTTACAGACTCTGATTGTAAACTTCAGTGCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp TCTCTACCTATACCCGATGTCAGTTTTAGTAGTTGCAGAAAAGCAGTTGACCAGTGGTGCTGCCCGTCCTaGAGAGAGCCCTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: SLPIPDVSFSSCRKAVDQWCCPS*REPCSW
Trigger: CCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCA...CTGGTCAACTGCTTTTCTGCAACTACTAAAACTGACATCGGGTATAGGTAGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp AAGAGGCTGAAGGACTTTCTTGCAAGAAGAGAAACAGAGGCTGCCAGTCTGTGTTCAGCTCGTCCTGGATaGGCGACTTCTGAGCGTACA +
Preference number: 4 (lower is better)
Translates to: KRLKDFLARRETEAASLCSARPG*ATSERT
Trigger: TGTACGCTCAGAAGTCGCGCATCCAGGACGAGCTGA...ACACAGACTGGCAGCCTCTGTTTCTCTTCTTGCAAGAAAGTCCTTCAGCCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR GCA 90 bp ATTAAGGCTTCGGGTAAGTACTGCTTGGAAACAATGTTTTCCAGCACTGAAGTTGGAGAGCCATGGTGCTaGCCGTCCTGCAGAGAGCCC +
Preference number: 4 (lower is better)
Translates to: IKASGKYCLETMFSSTEVGEPWC*PSCREP
Trigger: GGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCC...AACTTCAGTGCTGGAAAACATTGTTTCCAAGCAGTACTTACCCGAAGCCTTAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 90 bp CCGCCGCGCCTCCCGCCGCCGAGTGCAGCAGCCCGCTCAGGCTTTTaGGTAGCGGTGGCAGCCCGTCCACGCGCAGCCCCCGGGCCATGC +
Preference number: 5 (lower is better)
Translates to: PPRLPPPSAAARSGF*VAVAARPRAAPGPC
Trigger: GCATGGCCCGGGGGCTGCGCGTGGACGGGCTGCCACCGCTACCCAAAAGCCTGAGCGGGCTGCTGCACTCGGCGGCGGGAGGCGCGGCGG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp GCGCCCCGCCGCCGCCCGCGCCCCCTCGGTTCAGCTCGTCCTGGATaGGCGACTTCTGAGCGTACAGCCGCTCCAGGTGCCGCCAGCCAC +
Preference number: 5 (lower is better)
Translates to: APRRRPRPLGSARPG*ATSERTAAPGAASH
Trigger: GTGGCTGGCGGCACCTGGAGCGGCTGTACGCTCAGAAGTCGCGCATCCAGGACGAGCTGAACCGAGGGGGCGCGGGCGGCGGCGGGGCGC
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS TCA 90 bp CCGCCCGCGCCCCCTCGGTTCAGCTCGTCCTGGATGCGCGACTTCTaGGCGTACAGCCGCTCCAGGTGCCGCCAGCCACCCGCCGCGCCT +
Preference number: 5 (lower is better)
Translates to: PPAPPRFSSSWMRDF*AYSRSRCRQPPAAP
Trigger: AGGCGCGGCGGGTGGCTGGCGGCACCTGGAGCGGCTGTACGCTCAGAAGTCGCGCATCCAGGACGAGCTGAACCGAGGGGGCGCGGGCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp GAGAGGTGGGTAAGGGGCGACTGGTCCCTGGGAGAGCCATGGTGCTaGCCGTCCTGCAGAGAGCCCTGCTCCTGGAAGTCCTCCTCATCG +
Preference number: 5 (lower is better)
Translates to: ERWVRGDWSLGEPWC*PSCREPCSWKSSSS
Trigger: CGATGAGGAGGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCAGTCGCCCCTTACCCACCTCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 90 bp GACTCCAGAATCCAGTCACTGCTGGAGAGGTGGGTAAGGGGCGACTaGTCCCTGGGAGAGCCATGGTGCTGCCCGTCCTGCAGAGAGCCC +
Preference number: 5 (lower is better)
Translates to: DSRIQSLLERWVRGD*SLGEPWCCPSCREP
Trigger: GGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCAGTCGCCCCTTACCCACCTCTCCAGCAGTGACTGGATTCTGGAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp GTAAGGGGCGACTGGTCCCTGGGAGAGCCATGGTGCTGCCCGTCCTaGAGAGAGCCCTGCTCCTGGAAGTCCTCCTCATCGTCGAAGAAG +
Preference number: 5 (lower is better)
Translates to: VRGDWSLGEPWCCPS*REPCSWKSSSSSKK
Trigger: CTTCTTCGACGATGAGGAGGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCAGTCGCCCCTTAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp TGGTCCCTGGGAGAGCCATGGTGCTGCCCGTCCTGCAGAGAGCCCTaGTCCTGGAAGTCCTCCTCATCGTCGAAGAAGCCATTCTCCAGC +
Preference number: 5 (lower is better)
Translates to: WSLGEPWCCPSCREP*SWKSSSSSKKPFSS
Trigger: GCTGGAGAATGGCTTCTTCGACGATGAGGAGGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp GGAAGTCCTCCTCATCGTCGAAGAAGCCATTCTCCAGCGCATAGGTaGAGTCCAGACTGGAGGCTGCCTGGCACGCTCCCTTGTACTCCT +
Preference number: 5 (lower is better)
Translates to: GSPPHRRRSHSPAHR*SPDWRLPGTLPCTP
Trigger: AGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAATGGCTTCTTCGACGATGAGGAGGACTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 90 bp GAAGAAGCCATTCTCCAGCGCATAGGTGCAGTCCAGACTGGAGGCTaGCTGGCACGCTCCCTTGTACTCCTGAATGGACTCGTAGAGGCT +
Preference number: 5 (lower is better)
Translates to: EEAILQRIGAVQTGG*LARSLVLLNGLVEA
Trigger: AGCCTCTACGAGTCCATTCAGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAATGGCTTCTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 90 bp CATCGTCGAAGAAGCCATTCTCCAGCGCATAGGTGCAGTCCAGACTaGAGGCTGCCTGGCACGCTCCCTTGTACTCCTGAATGGACTCGT +
Preference number: 5 (lower is better)
Translates to: HRRRSHSPAHRCSPD*RLPGTLPCTPEWTR
Trigger: ACGAGTCCATTCAGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAATGGCTTCTTCGACGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS-3UTR CAA 90 bp GCAGCCTCACCCGATGCCCGTGAAGGCTTTCCACACGGAACCCTTCAGTCAGAGGTAGAGGCTGTACAGTaGGCAGAGCAAGGACATGTC +
Preference number: 5 (lower is better)
Translates to: AASPDAREGFPHGTLQSEVEAVQ*AEQGHV
Trigger: GACATGTCCTTGCTCTGCCAACTGTACAGCCTCTAC...CTCTGACTGAAGGGTTCCGTGTGGAAAGCCTTCACGGGCATCGGGTGAGGCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CAA 90 bp CCCGCCGCGCCTCCCGCCGCCGAGTGCAGCAGCCCGCTCAGGCTTTaGGGTAGCGGTGGCAGCCCGTCCACGCGCAGCCCCCGGGCCATG +
Preference number: 6 (lower is better)
Translates to: PAAPPAAECSSPLRL*GSGGSPSTRSPRAM
Trigger: CATGGCCCGGGGGCTGCGCGTGGACGGGCTGCCACCGCTACCCAAAAGCCTGAGCGGGCTGCTGCACTCGGCGGCGGGAGGCGCGGCGGG
78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 72 bp TCTCCTTGCGCAACAGCGCCAGCGCGGCGTCCAGGTTaGGGGGCTTGGTCCGCATCCCGGCCGCCCGCGCCC +
Preference number: 6 (lower is better)
Translates to: SPCATAPARRPG*GAWSASRPPAP
Trigger: GGGCGCGGGCGGCCGGGATGCGGACCAAGCCCCCCAACCTGGACGCCGCGCTGGCGCTGTTGCGCAAGGAGA
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 72 bp CTCCCGCCGCCGAGTGCAGCAGCCCGCTCAGGCTTTTaGGTAGCGGTGGCAGCCCGTCCACGCGCAGCCCCC +
Preference number: 6 (lower is better)
Translates to: LPPPSAAARSGF*VAVAARPRAAP
Trigger: GGGGGCTGCGCGTGGACGGGCTGCCACCGCTACCCAAAAGCCTGAGCGGGCTGCTGCACTCGGCGGCGGGAG
75% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CAA 72 bp CCTCCCGCCGCCGAGTGCAGCAGCCCGCTCAGGCTTTaGGGTAGCGGTGGCAGCCCGTCCACGCGCAGCCCC +
Preference number: 6 (lower is better)
Translates to: PPAAECSSPLRL*GSGGSPSTRSP
Trigger: GGGGCTGCGCGTGGACGGGCTGCCACCGCTACCCAAAAGCCTGAGCGGGCTGCTGCACTCGGCGGCGGGAGG
75% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp CGCCGCCCGCGCCCCCTCGGTTCAGCTCGTCCTGGATaGGCGACTTCTGAGCGTACAGCCGCTCCAGGTGCC +
Preference number: 6 (lower is better)
Translates to: RRPRPLGSARPG*ATSERTAAPGA
Trigger: GGCACCTGGAGCGGCTGTACGCTCAGAAGTCGCGCATCCAGGACGAGCTGAACCGAGGGGGCGCGGGCGGCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS TCA 72 bp CCCCCTCGGTTCAGCTCGTCCTGGATGCGCGACTTCTaGGCGTACAGCCGCTCCAGGTGCCGCCAGCCACCC +
Preference number: 6 (lower is better)
Translates to: PPRFSSSWMRDF*AYSRSRCRQPP
Trigger: GGGTGGCTGGCGGCACCTGGAGCGGCTGTACGCTCAGAAGTCGCGCATCCAGGACGAGCTGAACCGAGGGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp GTAAGGGGCGACTGGTCCCTGGGAGAGCCATGGTGCTaGCCGTCCTGCAGAGAGCCCTGCTCCTGGAAGTCC +
Preference number: 6 (lower is better)
Translates to: VRGDWSLGEPWC*PSCREPCSWKS
Trigger: GGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCAGTCGCCCCTTAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp GACTGGTCCCTGGGAGAGCCATGGTGCTGCCCGTCCTaGAGAGAGCCCTGCTCCTGGAAGTCCTCCTCATCG +
Preference number: 6 (lower is better)
Translates to: DWSLGEPWCCPS*REPCSWKSSSS
Trigger: CGATGAGGAGGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCCCAGGGACCAGTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp GGAGAGCCATGGTGCTGCCCGTCCTGCAGAGAGCCCTaGTCCTGGAAGTCCTCCTCATCGTCGAAGAAGCCA +
Preference number: 6 (lower is better)
Translates to: GEPWCCPSCREP*SWKSSSSSKKP
Trigger: TGGCTTCTTCGACGATGAGGAGGACTTCCAGGAGCAGGGCTCTCTGCAGGACGGGCAGCACCATGGCTCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp CCTCATCGTCGAAGAAGCCATTCTCCAGCGCATAGGTaGAGTCCAGACTGGAGGCTGCCTGGCACGCTCCCT +
Preference number: 6 (lower is better)
Translates to: PHRRRSHSPAHR*SPDWRLPGTLP
Trigger: AGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAATGGCTTCTTCGACGATGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS GCA 72 bp ATTCTCCAGCGCATAGGTGCAGTCCAGACTGGAGGCTaGCTGGCACGCTCCCTTGTACTCCTGAATGGACTC +
Preference number: 6 (lower is better)
Translates to: ILQRIGAVQTGG*LARSLVLLNGL
Trigger: GAGTCCATTCAGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 72 bp TGGAGGCTGCCTGGCACGCTCCCTTGTACTCCTGAATaGACTCGTAGAGGCTGTACAGTTGGCAGAGCAAGG +
Preference number: 6 (lower is better)
Translates to: WRLPGTLPCTPE*TRRGCTVGRAR
Trigger: CCTTGCTCTGCCAACTGTACAGCCTCTACGAGTCCATTCAGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7
CDS CCA 72 bp AGAAGCCATTCTCCAGCGCATAGGTGCAGTCCAGACTaGAGGCTGCCTGGCACGCTCCCTTGTACTCCTGAA +
Preference number: 6 (lower is better)
Translates to: RSHSPAHRCSPD*RLPGTLPCTPE
Trigger: TTCAGGAGTACAAGGGAGCGTGCCAGGCAGCCTCCAGTCTGGACTGCACCTATGCGCTGGAGAATGGCTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055257.7