Pregenerated sensors for FAM72A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055184Ensembl transcript IDs: ENSMUST00000068613.5
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAGTTCCAGGGCAGCCAGGGCCACACAGTGAGACTTAGTCTTAAAAGAGGGAAATTGAGCCTCTTATTTTaGGTGGCTGATATAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: EFQGSQGHTVRLSLKRGKLSLLF*VADIGG Trigger: CCCTCCTATATCAGCCACCCAAAATAAGAGGCTCAA...TTTCCCTCTTTTAAGACTAAGTCTCACTGTGTGGCCCTGGCTGCCCTGGAACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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| 3UTR-3UTR TCA 90 bp | TTGACTTTACCCGGATCACATGGTACAACATCTATAATGGCTTCAGAAGAATGTCTTATTATGTGCAGTTaGGCCTCTTATTTTGGGTGG | + |
|
Preference number: 2 (lower is better) Translates to: LTLPGSHGTTSIMASEECLIMCS*ASYFGW Trigger: CCACCCAAAATAAGAGGCTCAACTGCACATAATAAG...ACATTCTTCTGAAGCCATTATAGATGTTGTACCATGTGATCCGGGTAAAGTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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| 3UTR-3UTR TCA 90 bp | TTGACTTTACCCGGATCACATGGTACAACATCTATAATGGCTTCAGAAGAATGTCATTTGGAAGGTAGCTaGTTAACATGTGAAATTTCC | + |
|
Preference number: 2 (lower is better) Translates to: LTLPGSHGTTSIMASEECHLEGS*LTCEIS Trigger: GGAAATTTCACATGTTAATCAGCTACCTTCCAAATG...ACATTCTTCTGAAGCCATTATAGATGTTGTACCATGTGATCCGGGTAAAGTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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| 3UTR-3UTR CAA 90 bp | TTGACTTTACCCGGATCACATGGTACAACATCTATAATGGCTTCAGAAGAATGTTGTGAAATTTCCTATTaGAAGTTAGGGGAGAGTAAG | + |
|
Preference number: 3 (lower is better) Translates to: LTLPGSHGTTSIMASEECCEISY*KLGESK Trigger: CTTACTCTCCCCTAACTTCAAATAGGAAATTTCACA...ACATTCTTCTGAAGCCATTATAGATGTTGTACCATGTGATCCGGGTAAAGTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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| CDS-3UTR GCA 90 bp | TTCCAGGGCAGCCAGGGCCACACAGTGAGACTTAGTCTTAAAAGAGGGAAAACTAGAAGTGTCCATTGTTaGAGGAAAGAAGGCAGGAAC | + |
|
Preference number: 4 (lower is better) Translates to: FQGSQGHTVRLSLKRGKTRSVHC*RKEGRN Trigger: GTTCCTGCCTTCTTTCCTGCAACAATGGACACTTCT...AGTTTTCCCTCTTTTAAGACTAAGTCTCACTGTGTGGCCCTGGCTGCCCTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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| CDS-3UTR CAA 90 bp | TTGACTTTACCCGGATCACATGGTACAACATCTATAATGGCTTCAGAAGAATGTATGAAATCCACTGTGTaGGTAGGAGGGATGTCTGTA | + |
|
Preference number: 5 (lower is better) Translates to: LTLPGSHGTTSIMASEECMKSTV*VGGMSV Trigger: TACAGACATCCCTCCTACCAACACAGTGGATTTCAT...ACATTCTTCTGAAGCCATTATAGATGTTGTACCATGTGATCCGGGTAAAGTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068613.5 |
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