Pregenerated sensors for FAM50B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038246

Ensembl transcript IDs: ENSMUST00000039605.8, ENSMUST00000221037.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CGCCTTCGCTCCTTCTCGCGCAGCATCTCCAGCTGTATCCGGCGTTaGTCCAGCTGCTCCCTCTTGGCCAGCTGCATCTCCCGCTCCCTC	+
Preference number: 5 (lower is better) Translates to: RLRSFSRSISSCIRR*SSCSLLASCISRSL Trigger: GAGGGAGCGGGAGATGCAGCTGGCCAAGAGGGAGCAGCTGGAGCAACGCCGGATACAGCTGGAGATGCTGCGCGAGAAGGAGCGAAGGCG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS GCA 90 bp	CGCGCTCGCGGTCGGGCAGGAAGCTCGTGTCCACATCGGGATTCTTaGCCAAGTTCTTCTTGGCTCCAGCACTGTGGGCCTCGGCACTCT	+
Preference number: 5 (lower is better) Translates to: RARGRAGSSCPHRDS*PSSSWLQHCGPRHS Trigger: AGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCCCGATGTGGACACGAGCTTCCTGCCCGACCGCGAGCGCG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS GCA 72 bp	TCCCTGCGCAGCCCCTGCAGCGCCCGCTTCAGGAACTaGTGCACCGTGCTGCCCTTGCTCATGCGCACCGTG	+
Preference number: 6 (lower is better) Translates to: SLRSPCSARFRN*CTVLPLLMRTV Trigger: CACGGTGCGCATGAGCAAGGGCAGCACGGTGCAGCAGTTCCTGAAGCGGGCGCTGCAGGGGCTGCGCAGGGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS TCA 72 bp	CGCTCAGCAGCCGCACATCGTCGTGCACGTCGAAGCTaGAGAGCGGGCCGCTCTTGCCCCGGGCTTTGGCCA	+
Preference number: 6 (lower is better) Translates to: RSAAAHRRARRS*RAGRSCPGLWP Trigger: TGGCCAAAGCCCGGGGCAAGAGCGGCCCGCTCTTCAGCTTCGACGTGCACGACGATGTGCGGCTGCTGAGCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS GCA 72 bp	ATCCGGCGTTGCTCCAGCTGCTCCCTCTTGGCCAGCTaGATCTCCCGCTCCCTCAGCAGGGCCTCCTGCTTG	+
Preference number: 6 (lower is better) Translates to: IRRCSSCSLLAS*ISRSLSRASCL Trigger: CAAGCAGGAGGCCCTGCTGAGGGAGCGGGAGATGCAGCTGGCCAAGAGGGAGCAGCTGGAGCAACGCCGGAT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 90 bp	TCGCCTTCGCTCCTTCTCGCGCAGCATCTCCAGCTGTATCCGGCGTaGCTCCAGCTGCTCCCTCTTGGCCAGCTGCATCTCCCGCTCCCT	+
Preference number: 6 (lower is better) Translates to: SPSLLLAQHLQLYPA*LQLLPLGQLHLPLP Trigger: AGGGAGCGGGAGATGCAGCTGGCCAAGAGGGAGCAGCTGGAGCAACGCCGGATACAGCTGGAGATGCTGCGCGAGAAGGAGCGAAGGCGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 72 bp	CTTGGCTCCAGCACTGTGGGCCTCGGCACTCTCGGCTaGGCGGCTGTCCTCTTGGTCACCTTCTTCCTCGTC	+
Preference number: 6 (lower is better) Translates to: LGSSTVGLGTLG*AAVLLVTFFLV Trigger: GACGAGGAAGAAGGTGACCAAGAGGACAGCCGCCAAGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 90 bp	GGCAGGAAGCTCGTGTCCACATCGGGATTCTTGCCCAAGTTCTTCTaGGCTCCAGCACTGTGGGCCTCGGCACTCTCGGCTTGGCGGCTG	+
Preference number: 6 (lower is better) Translates to: GRKLVSTSGFLPKFF*APALWASALSAWRL Trigger: CAGCCGCCAAGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCCCGATGTGGACACGAGCTTCCTGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CCA 72 bp	GGATTCTTGCCCAAGTTCTTCTTGGCTCCAGCACTGTaGGCCTCGGCACTCTCGGCTTGGCGGCTGTCCTCT	+
Preference number: 6 (lower is better) Translates to: GFLPKFFLAPAL*ASALSAWRLSS Trigger: AGAGGACAGCCGCCAAGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 72 bp	CTCGTGTCCACATCGGGATTCTTGCCCAAGTTCTTCTaGGCTCCAGCACTGTGGGCCTCGGCACTCTCGGCT	+
Preference number: 6 (lower is better) Translates to: LVSTSGFLPKFF*APALWASALSA Trigger: AGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCCCGATGTGGACACGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 90 bp	CAAGTTCTTCTTGGCTCCAGCACTGTGGGCCTCGGCACTCTCGGCTaGGCGGCTGTCCTCTTGGTCACCTTCTTCCTCGTCCAACGTGAA	+
Preference number: 6 (lower is better) Translates to: QVLLGSSTVGLGTLG*AAVLLVTFFLVQRE Trigger: TTCACGTTGGACGAGGAAGAAGGTGACCAAGAGGACAGCCGCCAAGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 90 bp	CCTTCTTCCTCGTCCAACGTGAAAGACAGGTTGGAGATCTTGCGCTaGCGCTCTCGCCTTCGCTCCTTCTCGCGCAGCATCTCCAGCTGT	+
Preference number: 6 (lower is better) Translates to: PSSSSNVKDRLEILR*RSRLRSFSRSISSC Trigger: ACAGCTGGAGATGCTGCGCGAGAAGGAGCGAAGGCGAGAGCGCAAGCGCAAGATCTCCAACCTGTCTTTCACGTTGGACGAGGAAGAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 90 bp	TGGTCACCTTCTTCCTCGTCCAACGTGAAAGACAGGTTGGAGATCTaGCGCTTGCGCTCTCGCCTTCGCTCCTTCTCGCGCAGCATCTCC	+
Preference number: 6 (lower is better) Translates to: WSPSSSSNVKDRLEI*RLRSRLRSFSRSIS Trigger: GGAGATGCTGCGCGAGAAGGAGCGAAGGCGAGAGCGCAAGCGCAAGATCTCCAACCTGTCTTTCACGTTGGACGAGGAAGAAGGTGACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CCA 72 bp	TCGTGTCCACATCGGGATTCTTGCCCAAGTTCTTCTTaGCTCCAGCACTGTGGGCCTCGGCACTCTCGGCTT	+
Preference number: 6 (lower is better) Translates to: SCPHRDSCPSSS*LQHCGPRHSRL Trigger: AAGCCGAGAGTGCCGAGGCCCACAGTGCTGGAGCCAAGAAGAACTTGGGCAAGAATCCCGATGTGGACACGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 72 bp	TCGTCCAACGTGAAAGACAGGTTGGAGATCTTGCGCTaGCGCTCTCGCCTTCGCTCCTTCTCGCGCAGCATC	+
Preference number: 6 (lower is better) Translates to: SSNVKDRLEILR*RSRLRSFSRSI Trigger: GATGCTGCGCGAGAAGGAGCGAAGGCGAGAGCGCAAGCGCAAGATCTCCAACCTGTCTTTCACGTTGGACGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2
CDS CAA 72 bp	TGGTCACCTTCTTCCTCGTCCAACGTGAAAGACAGGTaGGAGATCTTGCGCTTGCGCTCTCGCCTTCGCTCC	+
Preference number: 6 (lower is better) Translates to: WSPSSSSNVKDR*EILRLRSRLRS Trigger: GGAGCGAAGGCGAGAGCGCAAGCGCAAGATCTCCAACCTGTCTTTCACGTTGGACGAGGAAGAAGGTGACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039605.8 ENSMUST00000221037.2

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