Pregenerated sensors for FAM50A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001962Ensembl transcript IDs: ENSMUST00000114160.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGAGGGCTCTaGCATGGTCACCTGAGCCCTGGAGACATGGAGGCACGCTGGGGA | + |
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Preference number: 1 (lower is better) Translates to: NIRSRNSNYHPHRGL*HGHLSPGDMEARWG Trigger: TCCCCAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCATGCCAGAGCCCTCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| 3UTR-3UTR CCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACTGGTCACCTGAGCCCTaGAGACATGGAGGCACGCTG | + |
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Preference number: 2 (lower is better) Translates to: GKISNDNIRSRNSNYHPHWSPEP*RHGGTL Trigger: CAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCA...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| 3UTR TCA 72 bp | ACTACCATCCTCACAGAGGGCTCTGGCATGGTCACCTaGGCCCTGGAGACATGGAGGCACGCTGGGGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: TTILTEGSGMVT*ALETWRHAGES Trigger: GCTCTCCCCAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCATGCCAGAGCCCTCTGTGAGGATGGTAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| 3UTR CCA 72 bp | TCAAGGAATAGCAACTACCATCCTCACAGAGGGCTCTaGCATGGTCACCTGAGCCCTGGAGACATGGAGGCA | + |
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Preference number: 3 (lower is better) Translates to: SRNSNYHPHRGL*HGHLSPGDMEA Trigger: TGCCTCCATGTCTCCAGGGCTCAGGTGACCATGCCAGAGCCCTCTGTGAGGATGGTAGTTGCTATTCCTTGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR TCA 90 bp | CATGGTCACCTGAGCCCTGGAGACATGGAGGCACGCTGGGGAGAGCCAAGGTCACCACAGTGGCATCACTaGGCAGTCGTACATCATCAT | + |
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Preference number: 4 (lower is better) Translates to: HGHLSPGDMEARWGEPRSPQWHH*AVVHHH Trigger: ATGATGATGTACGACTGCTCAGTGATGCCACTGTGG...TGACCTTGGCTCTCCCCAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | CATGGTCACCTGAGCCCTGGAGACATGGAGGCACGCTGGGGAGAGCCAAGGTCATTCTGTAGGAACTGCTaGATCGTGTTGCCTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: HGHLSPGDMEARWGEPRSFCRNC*IVLPFF Trigger: GAAGAAAGGCAACACGATGCAGCAGTTCCTACAGAA...TGACCTTGGCTCTCCCCAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | CATGGTCACCTGAGCCCTGGAGACATGGAGGCACGCTGGGGAGAGCCAAGGTCACATTATGTTCTCCTCTaGAATCCTCTGCTTCATCTG | + |
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Preference number: 4 (lower is better) Translates to: HGHLSPGDMEARWGEPRSHYVLL*NPLLHL Trigger: CAGATGAAGCAGAGGATTGCAGAGGAGAACATAATG...TGACCTTGGCTCTCCCCAGCGTGCCTCCATGTCTCCAGGGCTCAGGTGACCATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACTTGGCTTCCCACTCCTaGCGCAGCTCTTCCCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: GKISNDNIRSRNSNYHPHLASHS*RSSSRS Trigger: GCTTCGGGAAGAGCTGCGCCAGGAGTGGGAAGCCAA...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR TCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACCCTCTTCCTCCAAGGTaGAGGACAGGCTGGAGATCT | + |
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Preference number: 4 (lower is better) Translates to: GKISNDNIRSRNSNYHPHPLPPR*RTGWRS Trigger: AGATCTCCAGCCTGTCCTTCACCTTGGAGGAAGAGG...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCTCTTCTTCATTAGGTaGATGGCGCGTCCCGCCTCG | + |
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Preference number: 4 (lower is better) Translates to: VKGKISNDNIRSRNSNYHLFFIR*MARPAS Trigger: CGAGGCGGGACGCGCCATGCACCTAATGAAGAAGAG...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGAGCTTGGCCTCCTTCTTaGGCTCCTTCTCTCGAAGCT | + |
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Preference number: 4 (lower is better) Translates to: KISNDNIRSRNSNYHPHRAWPPS*APSLEA Trigger: AGCTTCGAGAGAAGGAGCGCAAGAAGGAGGCCAAGC...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR TCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACTACTTTGCCTGCATGTaGCTCATCCTTCTCCACAGT | + |
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Preference number: 4 (lower is better) Translates to: GKISNDNIRSRNSNYHPHYFACM*LILLHS Trigger: ACTGTGGAGAAGGATGAGTCACATGCAGGCAAAGTA...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACTCCTCTGCAATCCTCTaGTTCATCTGCTCCATTTGC | + |
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Preference number: 4 (lower is better) Translates to: GKISNDNIRSRNSNYHPHSSAIL*FICSIC Trigger: GCAAATGGAGCAGATGAAGCAGAGGATTGCAGAGGA...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGATCGCTCCTTCACCAGTaGCTCCTGTTTGGCCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KISNDNIRSRNSNYHPHRSLLHQ*LLFGLH Trigger: ATGAAGGCCAAACAGGAGGCACTGGTGAAGGAGCGA...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CCA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATTGGAGATCTTCCGCTTaGCCTCCTTCTTGCGCTCCT | + |
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Preference number: 4 (lower is better) Translates to: VKGKISNDNIRSRNSNYHWRSSA*PPSCAP Trigger: AGGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCA...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACTCCATTTGCTCACGCTaGTTCTCCCTCTTCTTCATT | + |
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Preference number: 4 (lower is better) Translates to: GKISNDNIRSRNSNYHPHSICSR*FSLFFI Trigger: AATGAAGAAGAGGGAGAAGCAGCGTGAGCAAATGGA...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGAATCCTCTGCTTCATCTaGTCCATTTGCTCACGCTGC | + |
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Preference number: 4 (lower is better) Translates to: KISNDNIRSRNSNYHPHRILCFI*SICSRC Trigger: GCAGCGTGAGCAAATGGAGCAGATGAAGCAGAGGAT...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CCA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATGTCCCATTTCTTTTCTaGGTCATAGGGCTCCCAGCG | + |
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Preference number: 4 (lower is better) Translates to: VKGKISNDNIRSRNSNYHVPFLF*VIGLPA Trigger: CGCTGGGAGCCCTATGACCCAGAAAAGAAATGGGAC...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATTTCATCTGCTCCATTTaGTCACGCTGCTTCTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: VKGKISNDNIRSRNSNYHFICSI*SRCFSL Trigger: GAGGGAGAAGCAGCGTGAGCAAATGGAGCAGATGAA...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGAACTGGACTTGAGCTCTaGTTCCACAGCATCATAGTG | + |
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Preference number: 4 (lower is better) Translates to: KISNDNIRSRNSNYHPHRTGLEL*FHSIIV Trigger: CACTATGATGCTGTGGAAGCAGAGCTCAAGTCCAGT...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCCACTTTTTCCTCGTaGCTTGGTAACGATGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: VKGKISNDNIRSRNSNYHPTFSS*LGNDEV Trigger: GACTTCATCGTTACCAAGGCACGAGGAAAAAGTGGG...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR GCA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGACACAGCATCATAGTGTaGAGAGAATTTCTTGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: KISNDNIRSRNSNYHPHRHSIIV*REFLVN Trigger: ATTGACAAGAAATTCTCTGCACACTATGATGCTGTG...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS TCA 90 bp | CCATCTCTTCCTCCTCTTCAACTCCCTCCTCCTCTTCCTCCAAGGTaGAGGACAGGCTGGAGATCTTCCGCTTGGCCTCCTTCTTGCGCT | + |
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Preference number: 5 (lower is better) Translates to: PSLPPLQLPPPLPPR*RTGWRSSAWPPSCA Trigger: AGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTTCACCTTGGAGGAAGAGGAGGAGGGAGTTGAAGAGGAGGAAGAGATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACCGCGTCCCGCCTCGCTaGCAGCGCCCTTGTACTGGG | + |
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Preference number: 5 (lower is better) Translates to: GKISNDNIRSRNSNYHPHRVPPR*QRPCTG Trigger: CCCAGTACAAGGGCGCTGCAAGCGAGGCGGGACGCG...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS TCA 90 bp | TCATCCTTCTCCACAGTGGCATCACTGAGCAGTCGTACATCATCATaGACGTCGAAGTTGAAGAGTGGCCCACTTTTTCCTCGTGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: SSFSTVASLSSRTSS*TSKLKSGPLFPRAL Trigger: CAAGGCACGAGGAAAAAGTGGGCCACTCTTCAACTTCGACGTTCATGATGATGTACGACTGCTCAGTGATGCCACTGTGGAGAAGGATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACCTTCATCTGCTCCATTaGCTCACGCTGCTTCTCCCT | + |
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Preference number: 5 (lower is better) Translates to: GKISNDNIRSRNSNYHPHLHLLH*LTLLLP Trigger: AGGGAGAAGCAGCGTGAGCAAATGGAGCAGATGAAG...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS GCA 90 bp | CATGTCATTCAGAGTCACAAGACCCACAGTACTGGACTTGAGCTCTaGTTCCACAGCATCATAGTGTGCAGAGAATTTCTTGTCAATGTT | + |
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Preference number: 5 (lower is better) Translates to: HVIQSHKTHSTGLEL*FHSIIVCREFLVNV Trigger: AACATTGACAAGAAATTCTCTGCACACTATGATGCTGTGGAAGCAGAGCTCAAGTCCAGTACTGTGGGTCTTGTGACTCTGAATGACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | AAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACAGAGGTCAGGCAAGAAGCTaGTGTCCACATCAGGGTTCT | + |
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Preference number: 5 (lower is better) Translates to: KISNDNIRSRNSNYHPHRGQARS*CPHQGS Trigger: AGAACCCTGATGTGGACACAAGCTTCTTGCCTGACC...TCTGTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS GCA 90 bp | ACCCACAGTACTGGACTTGAGCTCTGCTTCCACAGCATCATAGTGTaGAGAGAATTTCTTGTCAATGTTAGATTTCATTATGTTCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: THSTGLELCFHSIIV*REFLVNVRFHYVLL Trigger: GAGGAGAACATAATGAAATCTAACATTGACAAGAAATTCTCTGCACACTATGATGCTGTGGAAGCAGAGCTCAAGTCCAGTACTGTGGGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACGCAGGAAAAATGTGCTaGTTCTTCTCATACCAGCTC | + |
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Preference number: 5 (lower is better) Translates to: GKISNDNIRSRNSNYHPHAGKMC*FFSYQL Trigger: GAGCTGGTATGAGAAGAACAAGCACATTTTTCCTGC...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAGGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATTTGACTGCTCCTTTTTaGCCAGCTGTTTCTCTCGCT | + |
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Preference number: 5 (lower is better) Translates to: VKGKISNDNIRSRNSNYHLTAPF*PAVSLA Trigger: AGCGAGAGAAACAGCTGGCAAAAAAGGAGCAGTCAA...ATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCCTTTTAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS-3UTR CAA 90 bp | GGGAAAATCAGTAATGATAACATCAGGTCAAGGAATAGCAACTACCATCCTCACATGATTAAATCCTCCTaGATGTACATGAGCTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: GKISNDNIRSRNSNYHPHMIKSS*MYMSCS Trigger: GGAACAGCTCATGTACATCAAGGAGGATTTAATCAT...GTGAGGATGGTAGTTGCTATTCCTTGACCTGATGTTATCATTACTGATTTTCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS CAA 90 bp | TCCAAGGTGAAGGACAGGCTGGAGATCTTCCGCTTGGCCTCCTTCTaGCGCTCCTTCTCTCGAAGCTTCTCTAGTTTCAGCTGTAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: SKVKDRLEIFRLASF*RSFSRSFSSFSCSS Trigger: GGAGCTACAGCTGAAACTAGAGAAGCTTCGAGAGAAGGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTTCACCTTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS CAA 72 bp | AAGGACAGGCTGGAGATCTTCCGCTTGGCCTCCTTCTaGCGCTCCTTCTCTCGAAGCTTCTCTAGTTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: KDRLEIFRLASF*RSFSRSFSSFS Trigger: GCTGAAACTAGAGAAGCTTCGAGAGAAGGAGCGCAAGAAGGAGGCCAAGCGGAAGATCTCCAGCCTGTCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS TCA 72 bp | TCCACAGTGGCATCACTGAGCAGTCGTACATCATCATaGACGTCGAAGTTGAAGAGTGGCCCACTTTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: STVASLSSRTSS*TSKLKSGPLFP Trigger: AGGAAAAAGTGGGCCACTCTTCAACTTCGACGTTCATGATGATGTACGACTGCTCAGTGATGCCACTGTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS GCA 72 bp | CAGAGTCACAAGACCCACAGTACTGGACTTGAGCTCTaGTTCCACAGCATCATAGTGTGCAGAGAATTTCTT | + |
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Preference number: 6 (lower is better) Translates to: QSHKTHSTGLEL*FHSIIVCREFL Trigger: AAGAAATTCTCTGCACACTATGATGCTGTGGAAGCAGAGCTCAAGTCCAGTACTGTGGGTCTTGTGACTCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS GCA 72 bp | AACGTCGAAGTTGAAGAGTGGCCCACTTTTTCCTCGTaGCTTGGTAACGATGAAGTCATAGAAGCTGTGATG | + |
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Preference number: 6 (lower is better) Translates to: NVEVEEWPTFSS*LGNDEVIEAVM Trigger: CATCACAGCTTCTATGACTTCATCGTTACCAAGGCACGAGGAAAAAGTGGGCCACTCTTCAACTTCGACGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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| CDS GCA 72 bp | ATGTTAGATTTCATTATGTTCTCCTCTGCAATCCTCTaGTTCATCTGCTCCATTTGCTCACGCTGCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: MLDFIMFSSAIL*FICSICSRCFS Trigger: GGAGAAGCAGCGTGAGCAAATGGAGCAGATGAAGCAGAGGATTGCAGAGGAGAACATAATGAAATCTAACAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114160.2 |
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