Pregenerated sensors for FAM47C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078315Ensembl transcript IDs: ENSMUST00000105110.4
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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CDS CCA 90 bp | TCTGATCTCTTTCACTTTGCTGAGCCTCCTGCAGAACCTGAGATCTaGAGGAAGCAGGCTGATTTTCTTGATGGCAGAATCAGTATAGAC | + |
Preference number: 5 (lower is better) Translates to: SDLFHFAEPPAEPEI*RKQADFLDGRISID Trigger: GTCTATACTGATTCTGCCATCAAGAAAATCAGCCTGCTTCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS TCA 90 bp | AAATTGCTTCATCATGAAATGTTCATCAATGCCCAAGTCTCCAAATaGGTTTACCCATGCACAGAAGTCATAGACTCCTTTGGGTATGTG | + |
Preference number: 5 (lower is better) Translates to: KLLHHEMFINAQVSK*VYPCTEVIDSFGYV Trigger: CACATACCCAAAGGAGTCTATGACTTCTGTGCATGGGTAAACTCATTTGGAGACTTGGGCATTGATGAACATTTCATGATGAAGCAATTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS TCA 90 bp | TATAGACTGGTTTGCACTCATAGCCAATGTCAAATTGCTTCATCATaGAATGTTCATCAATGCCCAAGTCTCCAAATGAGTTTACCCATG | + |
Preference number: 5 (lower is better) Translates to: YRLVCTHSQCQIASS*NVHQCPSLQMSLPM Trigger: CATGGGTAAACTCATTTGGAGACTTGGGCATTGATGAACATTTCATGATGAAGCAATTTGACATTGGCTATGAGTGCAAACCAGTCTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 90 bp | CAGCGTCGGCCATCCAGAGAGGTAGGGAACTTATGTTGTTCCTGTTaGTGCTTCGCAAAACACTTAGAAGGCAACCTGTCCTTGAACCAG | + |
Preference number: 6 (lower is better) Translates to: QRRPSREVGNLCCSC*CFAKHLEGNLSLNQ Trigger: CTGGTTCAAGGACAGGTTGCCTTCTAAGTGTTTTGCGAAGCACAAACAGGAACAACATAAGTTCCCTACCTCTCTGGATGGCCGACGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 90 bp | AAAGGACGCTGGGTCAGTTTTGCTTCTGTTCTCTTCACAAAGGCCTaGCGAGCTTGCTGGGCCAATGACAGAGAGGAAAACAGGCTTAAG | + |
Preference number: 6 (lower is better) Translates to: KGRWVSFASVLFTKA*RACWANDREENRLK Trigger: CTTAAGCCTGTTTTCCTCTCTGTCATTGGCCCAGCAAGCTCGCAAGGCCTTTGTGAAGAGAACAGAAGCAAAACTGACCCAGCGTCCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 90 bp | CTTTCAAAGTTTGCCTCCTGTATGGAGAATCTGATCTCTTTCACTTaGCTGAGCCTCCTGCAGAACCTGAGATCTGGAGGAAGCAGGCTG | + |
Preference number: 6 (lower is better) Translates to: LSKFASCMENLISFT*LSLLQNLRSGGSRL Trigger: CAGCCTGCTTCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGATTCTCCATACAGGAGGCAAACTTTGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CCA 72 bp | GGCTTAAGTCCTGGCACCGATTTTTCTGACTCTTTCTaGAGCCATGGTGGACTTCATGAGAAATTGTGGGGA | + |
Preference number: 6 (lower is better) Translates to: GLSPGTDFSDSF*SHGGLHEKLWG Trigger: TCCCCACAATTTCTCATGAAGTCCACCATGGCTCCAGAAAGAGTCAGAAAAATCGGTGCCAGGACTTAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 72 bp | TTTGCCTCCTGTATGGAGAATCTGATCTCTTTCACTTaGCTGAGCCTCCTGCAGAACCTGAGATCTGGAGGA | + |
Preference number: 6 (lower is better) Translates to: FASCMENLISFT*LSLLQNLRSGG Trigger: TCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGATTCTCCATACAGGAGGCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 72 bp | CCATCCAGAGAGGTAGGGAACTTATGTTGTTCCTGTTaGTGCTTCGCAAAACACTTAGAAGGCAACCTGTCC | + |
Preference number: 6 (lower is better) Translates to: PSREVGNLCCSC*CFAKHLEGNLS Trigger: GGACAGGTTGCCTTCTAAGTGTTTTGCGAAGCACAAACAGGAACAACATAAGTTCCCTACCTCTCTGGATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CAA 72 bp | TCTTCATCCCTTTGCTGCATGATCAATTCATGTGCTTaGAGTACTCTTGGTATTGGAGTGTTGACAGTGTCA | + |
Preference number: 6 (lower is better) Translates to: SSSLCCMINSCA*STLGIGVLTVS Trigger: TGACACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAAAGGGATGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CCA 72 bp | CAGGCTGATTTTCTTGATGGCAGAATCAGTATAGACTaGTTTGCACTCATAGCCAATGTCAAATTGCTTCAT | + |
Preference number: 6 (lower is better) Translates to: QADFLDGRISID*FALIANVKLLH Trigger: ATGAAGCAATTTGACATTGGCTATGAGTGCAAACCAGTCTATACTGATTCTGCCATCAAGAAAATCAGCCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS CCA 72 bp | TTGCTGCATGATCAATTCATGTGCTTTGAGTACTCTTaGTATTGGAGTGTTGACAGTGTCATAATTCCATCC | + |
Preference number: 6 (lower is better) Translates to: LLHDQFMCFEYS*YWSVDSVIIPS Trigger: GGATGGAATTATGACACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |
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CDS GCA 72 bp | ATAATCTTCATCCCTTTGCTGCATGATCAATTCATGTaGTTTGAGTACTCTTGGTATTGGAGTGTTGACAGT | + |
Preference number: 6 (lower is better) Translates to: IIFIPLLHDQFM*FEYSWYWSVDS Trigger: ACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAAAGGGATGAAGATTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105110.4 |