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Pregenerated sensors for FAM47C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000078315

Ensembl transcript IDs: ENSMUST00000105110.4

Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp TCTGATCTCTTTCACTTTGCTGAGCCTCCTGCAGAACCTGAGATCTaGAGGAAGCAGGCTGATTTTCTTGATGGCAGAATCAGTATAGAC +
Preference number: 5 (lower is better)
Translates to: SDLFHFAEPPAEPEI*RKQADFLDGRISID
Trigger: GTCTATACTGATTCTGCCATCAAGAAAATCAGCCTGCTTCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS TCA 90 bp AAATTGCTTCATCATGAAATGTTCATCAATGCCCAAGTCTCCAAATaGGTTTACCCATGCACAGAAGTCATAGACTCCTTTGGGTATGTG +
Preference number: 5 (lower is better)
Translates to: KLLHHEMFINAQVSK*VYPCTEVIDSFGYV
Trigger: CACATACCCAAAGGAGTCTATGACTTCTGTGCATGGGTAAACTCATTTGGAGACTTGGGCATTGATGAACATTTCATGATGAAGCAATTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS TCA 90 bp TATAGACTGGTTTGCACTCATAGCCAATGTCAAATTGCTTCATCATaGAATGTTCATCAATGCCCAAGTCTCCAAATGAGTTTACCCATG +
Preference number: 5 (lower is better)
Translates to: YRLVCTHSQCQIASS*NVHQCPSLQMSLPM
Trigger: CATGGGTAAACTCATTTGGAGACTTGGGCATTGATGAACATTTCATGATGAAGCAATTTGACATTGGCTATGAGTGCAAACCAGTCTATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 90 bp CAGCGTCGGCCATCCAGAGAGGTAGGGAACTTATGTTGTTCCTGTTaGTGCTTCGCAAAACACTTAGAAGGCAACCTGTCCTTGAACCAG +
Preference number: 6 (lower is better)
Translates to: QRRPSREVGNLCCSC*CFAKHLEGNLSLNQ
Trigger: CTGGTTCAAGGACAGGTTGCCTTCTAAGTGTTTTGCGAAGCACAAACAGGAACAACATAAGTTCCCTACCTCTCTGGATGGCCGACGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 90 bp AAAGGACGCTGGGTCAGTTTTGCTTCTGTTCTCTTCACAAAGGCCTaGCGAGCTTGCTGGGCCAATGACAGAGAGGAAAACAGGCTTAAG +
Preference number: 6 (lower is better)
Translates to: KGRWVSFASVLFTKA*RACWANDREENRLK
Trigger: CTTAAGCCTGTTTTCCTCTCTGTCATTGGCCCAGCAAGCTCGCAAGGCCTTTGTGAAGAGAACAGAAGCAAAACTGACCCAGCGTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 90 bp CTTTCAAAGTTTGCCTCCTGTATGGAGAATCTGATCTCTTTCACTTaGCTGAGCCTCCTGCAGAACCTGAGATCTGGAGGAAGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: LSKFASCMENLISFT*LSLLQNLRSGGSRL
Trigger: CAGCCTGCTTCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGATTCTCCATACAGGAGGCAAACTTTGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CCA 72 bp GGCTTAAGTCCTGGCACCGATTTTTCTGACTCTTTCTaGAGCCATGGTGGACTTCATGAGAAATTGTGGGGA +
Preference number: 6 (lower is better)
Translates to: GLSPGTDFSDSF*SHGGLHEKLWG
Trigger: TCCCCACAATTTCTCATGAAGTCCACCATGGCTCCAGAAAGAGTCAGAAAAATCGGTGCCAGGACTTAAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 72 bp TTTGCCTCCTGTATGGAGAATCTGATCTCTTTCACTTaGCTGAGCCTCCTGCAGAACCTGAGATCTGGAGGA +
Preference number: 6 (lower is better)
Translates to: FASCMENLISFT*LSLLQNLRSGG
Trigger: TCCTCCAGATCTCAGGTTCTGCAGGAGGCTCAGCAAAGTGAAAGAGATCAGATTCTCCATACAGGAGGCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 72 bp CCATCCAGAGAGGTAGGGAACTTATGTTGTTCCTGTTaGTGCTTCGCAAAACACTTAGAAGGCAACCTGTCC +
Preference number: 6 (lower is better)
Translates to: PSREVGNLCCSC*CFAKHLEGNLS
Trigger: GGACAGGTTGCCTTCTAAGTGTTTTGCGAAGCACAAACAGGAACAACATAAGTTCCCTACCTCTCTGGATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CAA 72 bp TCTTCATCCCTTTGCTGCATGATCAATTCATGTGCTTaGAGTACTCTTGGTATTGGAGTGTTGACAGTGTCA +
Preference number: 6 (lower is better)
Translates to: SSSLCCMINSCA*STLGIGVLTVS
Trigger: TGACACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAAAGGGATGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CCA 72 bp CAGGCTGATTTTCTTGATGGCAGAATCAGTATAGACTaGTTTGCACTCATAGCCAATGTCAAATTGCTTCAT +
Preference number: 6 (lower is better)
Translates to: QADFLDGRISID*FALIANVKLLH
Trigger: ATGAAGCAATTTGACATTGGCTATGAGTGCAAACCAGTCTATACTGATTCTGCCATCAAGAAAATCAGCCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS CCA 72 bp TTGCTGCATGATCAATTCATGTGCTTTGAGTACTCTTaGTATTGGAGTGTTGACAGTGTCATAATTCCATCC +
Preference number: 6 (lower is better)
Translates to: LLHDQFMCFEYS*YWSVDSVIIPS
Trigger: GGATGGAATTATGACACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4
CDS GCA 72 bp ATAATCTTCATCCCTTTGCTGCATGATCAATTCATGTaGTTTGAGTACTCTTGGTATTGGAGTGTTGACAGT +
Preference number: 6 (lower is better)
Translates to: IIFIPLLHDQFM*FEYSWYWSVDS
Trigger: ACTGTCAACACTCCAATACCAAGAGTACTCAAAGCACATGAATTGATCATGCAGCAAAGGGATGAAGATTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105110.4