Pregenerated sensors for FAM3D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021749

Ensembl transcript IDs: ENSMUST00000022269.7

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TGGGGGTCTCCAGAGTACATGTCAAAGCTGTCCTTTTTCATCACCTaGCCAGTTGATCCGTTCACCAGAGCAACGTTCAGGCCTCTGCCC	+
Preference number: 5 (lower is better) Translates to: WGSPEYMSKLSFFIT*PVDPFTRATFRPLP Trigger: GGGCAGAGGCCTGAACGTTGCTCTGGTGAACGGATCAACTGGCCAGGTGATGAAAAAGGACAGCTTTGACATGTACTCTGGAGACCCCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 90 bp	ACCAGGGTGCTATCTGGAATTTCCGTAAGGAAGTTCAGCAGGAGTTaGGGGTCTCCAGAGTACATGTCAAAGCTGTCCTTTTTCATCACC	+
Preference number: 5 (lower is better) Translates to: TRVLSGISVRKFSRS*GSPEYMSKLSFFIT Trigger: GGTGATGAAAAAGGACAGCTTTGACATGTACTCTGGAGACCCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAGCACCCTGGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	CAGATCTTGCTGAGCCCACACTTGGACTTCGGGGTCTaGATGTCCTTGGGGGTTATGCCCAGCCAGCGTGGC	+
Preference number: 6 (lower is better) Translates to: QILLSPHLDFGV*MSLGVMPSQRG Trigger: GCCACGCTGGCTGGGCATAACCCCCAAGGACATCCAGACCCCGAAGTCCAAGTGTGGGCTCAGCAAGATCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CAA 72 bp	CTGAGCCCACACTTGGACTTCGGGGTCTGGATGTCCTaGGGGGTTATGCCCAGCCAGCGTGGCAGACGAATT	+
Preference number: 6 (lower is better) Translates to: LSPHLDFGVWMS*GVMPSQRGRRI Trigger: AATTCGTCTGCCACGCTGGCTGGGCATAACCCCCAAGGACATCCAGACCCCGAAGTCCAAGTGTGGGCTCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS TCA 72 bp	TGCCCAGCCAGCGTGGCAGACGAATTGTTTTCCTGCTaGAGCTTGTGTAGCTGCGGAGGAAGACCCACATGG	+
Preference number: 6 (lower is better) Translates to: CPASVADELFSC*SLCSCGGRPTW Trigger: CCATGTGGGTCTTCCTCCGCAGCTACACAAGCTTCAGCAGGAAAACAATTCGTCTGCCACGCTGGCTGGGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	GGTCTGGATGTCCTTGGGGGTTATGCCCAGCCAGCGTaGCAGACGAATTGTTTTCCTGCTGAAGCTTGTGTA	+
Preference number: 6 (lower is better) Translates to: GLDVLGGYAQPA*QTNCFPAEACV Trigger: TACACAAGCTTCAGCAGGAAAACAATTCGTCTGCCACGCTGGCTGGGCATAACCCCCAAGGACATCCAGACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS TCA 72 bp	CATGTCAAAGCTGTCCTTTTTCATCACCTGGCCAGTTaGTCCGTTCACCAGAGCAACGTTCAGGCCTCTGCC	+
Preference number: 6 (lower is better) Translates to: HVKAVLFHHLAS*SVHQSNVQASA Trigger: GGCAGAGGCCTGAACGTTGCTCTGGTGAACGGATCAACTGGCCAGGTGATGAAAAAGGACAGCTTTGACATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	GTCATCATAGGAGGCTACCAGCACCAGGGTGCTATCTaGAATTTCCGTAAGGAAGTTCAGCAGGAGTTGGGG	+
Preference number: 6 (lower is better) Translates to: VIIGGYQHQGAI*NFRKEVQQELG Trigger: CCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAGCACCCTGGTGCTGGTAGCCTCCTATGATGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CAA 72 bp	ACATGTCAAAGCTGTCCTTTTTCATCACCTGGCCAGTaGATCCGTTCACCAGAGCAACGTTCAGGCCTCTGC	+
Preference number: 6 (lower is better) Translates to: TCQSCPFSSPGQ*IRSPEQRSGLC Trigger: GCAGAGGCCTGAACGTTGCTCTGGTGAACGGATCAACTGGCCAGGTGATGAAAAAGGACAGCTTTGACATGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	CCAGAGTACATGTCAAAGCTGTCCTTTTTCATCACCTaGCCAGTTGATCCGTTCACCAGAGCAACGTTCAGG	+
Preference number: 6 (lower is better) Translates to: PEYMSKLSFFIT*PVDPFTRATFR Trigger: CCTGAACGTTGCTCTGGTGAACGGATCAACTGGCCAGGTGATGAAAAAGGACAGCTTTGACATGTACTCTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CAA 90 bp	CACCAGGGTGCTATCTGGAATTTCCGTAAGGAAGTTCAGCAGGAGTaGGGGGTCTCCAGAGTACATGTCAAAGCTGTCCTTTTTCATCAC	+
Preference number: 6 (lower is better) Translates to: HQGAIWNFRKEVQQE*GVSRVHVKAVLFHH Trigger: GTGATGAAAAAGGACAGCTTTGACATGTACTCTGGAGACCCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAGCACCCTGGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CAA 90 bp	GGCACACAGCCCTCGAGCTCTAGCAACTCCGGCCATCCGTCATATTaGTTTGTTTCTGGGTTGTTCTTTAAGAACTGCTCATATGGGCTT	+
Preference number: 6 (lower is better) Translates to: GTQPSSSSNSGHPSY*FVSGLFFKNCSYGL Trigger: AAGCCCATATGAGCAGTTCTTAAAGAACAACCCAGAAACAAACAAATATGACGGATGGCCGGAGTTGCTAGAGCTCGAGGGCTGTGTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	AGCAACGTTCAGGCCTCTGCCCACGTTGTTTCGCACTaGACTCATGATAATTTCGTCTTCAAAGCACATGGA	+
Preference number: 6 (lower is better) Translates to: SNVQASAHVVSH*THDNFVFKAHG Trigger: TCCATGTGCTTTGAAGACGAAATTATCATGAGTCCAGTGCGAAACAACGTGGGCAGAGGCCTGAACGTTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CAA 72 bp	GCTATCTGGAATTTCCGTAAGGAAGTTCAGCAGGAGTaGGGGGTCTCCAGAGTACATGTCAAAGCTGTCCTT	+
Preference number: 6 (lower is better) Translates to: AIWNFRKEVQQE*GVSRVHVKAVL Trigger: AAGGACAGCTTTGACATGTACTCTGGAGACCCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022269.7
CDS CCA 72 bp	CTATCTGGAATTTCCGTAAGGAAGTTCAGCAGGAGTTaGGGGTCTCCAGAGTACATGTCAAAGCTGTCCTTT	+
Preference number: 6 (lower is better) Translates to: LSGISVRKFSRS*GSPEYMSKLSF Trigger: AAAGGACAGCTTTGACATGTACTCTGGAGACCCCCAACTCCTGCTGAACTTCCTTACGGAAATTCCAGATAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022269.7