Pregenerated sensors for FAM3C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029672Ensembl transcript IDs: ENSMUST00000081288.14, ENSMUST00000163371.8, ENSMUST00000163963.8, ENSMUST00000165576.8
Found 37 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTCTACAAAACCTCTCTGAGCACAGACGATTATTTATCTCCTCATaGACTACATTCAATTTGAGGAGAGAAACAGTAGCGCAGGTCAGT | + |
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Preference number: 1 (lower is better) Translates to: SLQNLSEHRRLFISS*TTFNLRRETVAQVS Trigger: ACTGACCTGCGCTACTGTTTCTCTCCTCAAATTGAATGTAGTTCATGAGGAGATAAATAATCGTCTGTGCTCAGAGAGGTTTTGTAGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR TCA 90 bp | ACACAGCATCACAGAATTCACACCGCTAACACAGAATTGAGAAAATaGGCTCTGAATGACACCTACATTAATATTCCTCTTCACTGTTAT | + |
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Preference number: 1 (lower is better) Translates to: TQHHRIHTANTELRK*ALNDTYINIPLHCY Trigger: ATAACAGTGAAGAGGAATATTAATGTAGGTGTCATTCAGAGCTCATTTTCTCAATTCTGTGTTAGCGGTGTGAATTCTGTGATGCTGTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR CAA 90 bp | GCAGAAAAATGCCTGTATTACCCTAAATGTACTGACCCAGTTGTCTaGAATGACCTGATTAGGTCGAGGAAGGGACTCGGCCTGGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: AEKCLYYPKCTDPVV*NDLIRSRKGLGLGP Trigger: GGGGCCCAGGCCGAGTCCCTTCCTCGACCTAATCAGGTCATTCAAGACAACTGGGTCAGTACATTTAGGGTAATACAGGCATTTTTCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR-3UTR TCA 90 bp | AAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGAACAACACAGAGCGGCTGCCTaGCCACTCTCCTGCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: KGTAITCQIFIQRHVYEQHRAAA*PLSCRV Trigger: GACTCTGCAGGAGAGTGGTCAGGCAGCCGCTCTGTG...TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTCACAGAGCGGCTGCCTaGCCACTCTCCTGCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: LSFEGYCHNMPDFYTETRHRAAA*PLSCRV Trigger: GACTCTGCAGGAGAGTGGTCAGGCAGCCGCTCTGTG...ACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| 3UTR-3UTR TCA 90 bp | AGCATGAACATTTCACTTGTTTATGTTGCATTTGAAGTGGATGTATGTCACCTACACAGAGCGGCTGCCTaGCCACTCTCCTGCAGAGTC | + |
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Preference number: 2 (lower is better) Translates to: SMNISLVYVAFEVDVCHLHRAAA*PLSCRV Trigger: GACTCTGCAGGAGAGTGGTCAGGCAGCCGCTCTGTG...TAGGTGACATACATCCACTTCAAATGCAACATAAACAAGTGAAATGTTCATGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR-3UTR GCA 90 bp | TCTTCTCCCTCCCAGCAGCTTATGCAAATGGAAAGCCCATCTCTCAAAGGGTTATTTCAGGGGATGTTCTaGAGGTATAGTGCTTTGTCA | + |
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Preference number: 2 (lower is better) Translates to: SSPSQQLMQMESPSLKGLFQGMF*RYSALS Trigger: TGACAAAGCACTATACCTGCAGAACATCCCCTGAAA...TAACCCTTTGAGAGATGGGCTTTCCATTTGCATAAGCTGCTGGGAGGGAGAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTCTCCCTCCCAGCAGCTTATGCAAATGGAAAGCCCATCTCTCAAAGGGTTAACAGAATTGAGAAAATaGGCTCTGAATGACACCTAC | + |
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Preference number: 2 (lower is better) Translates to: SSPSQQLMQMESPSLKGLTELRK*ALNDTY Trigger: GTAGGTGTCATTCAGAGCTCATTTTCTCAATTCTGT...TAACCCTTTGAGAGATGGGCTTTCCATTTGCATAAGCTGCTGGGAGGGAGAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR TCA 72 bp | CACATGCTACTGAAATATGTACACAGAGCGGCTGCCTaGCCACTCTCCTGCAGAGTCAAAGTGCGTTCCTCC | + |
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Preference number: 3 (lower is better) Translates to: HMLLKYVHRAAA*PLSCRVKVRSS Trigger: GGAGGAACGCACTTTGACTCTGCAGGAGAGTGGTCAGGCAGCCGCTCTGTGTACATATTTCAGTAGCATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| 3UTR TCA 72 bp | GATTTTACGTGTGGCCTCATCCCACAAAGGGCAGCATaGACATTTCACTTGTTTATGTTGCATTTGAAGTGG | + |
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Preference number: 3 (lower is better) Translates to: DFTCGLIPQRAA*TFHLFMLHLKW Trigger: CCACTTCAAATGCAACATAAACAAGTGAAATGTTCATGCTGCCCTTTGTGGGATGAGGCCACACGTAAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR CCA 72 bp | GCTATGAGAGTCAAGTATTCCTGTCCTAAAATCATGTaGTCGATGAAAGCAGAAAAATGCCTGTATTACCCT | + |
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Preference number: 3 (lower is better) Translates to: AMRVKYSCPKIM*SMKAEKCLYYP Trigger: AGGGTAATACAGGCATTTTTCTGCTTTCATCGACCACATGATTTTAGGACAGGAATACTTGACTCTCATAGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR TCA 72 bp | CACAGAATTCACACCGCTAACACAGAATTGAGAAAATaGGCTCTGAATGACACCTACATTAATATTCCTCTT | + |
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Preference number: 3 (lower is better) Translates to: HRIHTANTELRK*ALNDTYINIPL Trigger: AAGAGGAATATTAATGTAGGTGTCATTCAGAGCTCATTTTCTCAATTCTGTGTTAGCGGTGTGAATTCTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR TCA 72 bp | GAGTCAAGTATTCCTGTCCTAAAATCATGTGGTCGATaGAAGCAGAAAAATGCCTGTATTACCCTAAATGTA | + |
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Preference number: 3 (lower is better) Translates to: ESSIPVLKSCGR*KQKNACITLNV Trigger: TACATTTAGGGTAATACAGGCATTTTTCTGCTTTCATCGACCACATGATTTTAGGACAGGAATACTTGACTC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| 3UTR GCA 72 bp | ACAACTAGCCAAAAATCTCTTTCATTTGAAGGGTACTaGCATAACATGCCAGATTTTTATACAGAGACACGT | + |
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Preference number: 3 (lower is better) Translates to: TTSQKSLSFEGY*HNMPDFYTETR Trigger: ACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTTGGCTAGTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| 3UTR GCA 72 bp | AAAAATCTCTTTCATTTGAAGGGTACTGCCATAACATaGCAGATTTTTATACAGAGACACGTATACGAACAA | + |
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Preference number: 3 (lower is better) Translates to: KNLFHLKGTAIT*QIFIQRHVYEQ Trigger: TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | GACCACTCTCCTGCAGAGTCAAAGTGCGTTCCTCCTCGCCTCTCGCTCCTTCCCATCCGTGAGTTTGGTTaGTCCATCATCGTATGTAGC | + |
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Preference number: 4 (lower is better) Translates to: DHSPAESKCVPPRLSLLPIREFG*SIIVCS Trigger: GCTACATACGATGATGGAGCAACCAAACTCACGGAT...GGGAAGGAGCGAGAGGCGAGGAGGAACGCACTTTGACTCTGCAGGAGAGTGGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR TCA 90 bp | CATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGCCGTGCCTCATCCGTaGGTTTGGTTGCTCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: HLKGTAITCQIFIQRHVYAVPHP*VWLLHH Trigger: ATGATGGAGCAACCAAACTCACGGATGAGGCACGGC...GTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR TCA 90 bp | CTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTGCCGTGCCTCATCCGTaGGTTTGGTTGCTCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: LSFEGYCHNMPDFYTETRAVPHP*VWLLHH Trigger: ATGATGGAGCAACCAAACTCACGGATGAGGCACGGC...ACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | TTCCCCTGTTTTCCCATTTACCAAGGCAATATTGATTCCTCTTCCGACATTATTGGCCACTACCAACTTTaGAGCTCCTGCTACCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: FPCFPIYQGNIDSSSDIIGHYQL*SSCYPH Trigger: ATGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCC...AATAATGTCGGAAGAGGAATCAATATTGCCTTGGTAAATGGGAAAACAGGGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000163371.8 |
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| CDS-3UTR GCA 90 bp | CATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGGCCACTACCAACTTTaGAGCTCCTGCTACCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: HLKGTAITCQIFIQRHVYGHYQL*SSCYPH Trigger: ATGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCC...GTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR TCA 90 bp | AGCATGAACATTTCACTTGTTTATGTTGCATTTGAAGTGGATGTATGTCACCTAGCCGTGCCTCATCCGTaGGTTTGGTTGCTCCATCAT | + |
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Preference number: 4 (lower is better) Translates to: SMNISLVYVAFEVDVCHLAVPHP*VWLLHH Trigger: ATGATGGAGCAACCAAACTCACGGATGAGGCACGGC...TAGGTGACATACATCCACTTCAAATGCAACATAAACAAGTGAAATGTTCATGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | AGCCAAAAATCTCTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATGGCCACTACCAACTTTaGAGCTCCTGCTACCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: SQKSLSFEGYCHNMPDFYGHYQL*SSCYPH Trigger: ATGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCC...ATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTTGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | AAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGAACAAAAACTCAATGAATGGTaGCACATCTCCTCCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: KGTAITCQIFIQRHVYEQKLNEW*HISSPH Trigger: ATGTGGGGAGGAGATGTGGCACCATTCATTGAGTTT...TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | CTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTAAACTCAATGAATGGTaGCACATCTCCTCCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: LSFEGYCHNMPDFYTETRKLNEW*HISSPH Trigger: ATGTGGGGAGGAGATGTGGCACCATTCATTGAGTTT...ACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | CTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTCAACTTTGCAGCTCCTaGTACCCTCATTTTTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: LSFEGYCHNMPDFYTETRQLCSS*YPHFCL Trigger: AAGGCAAAAATGAGGGTAGCAGGAGCTGCAAAGTTG...ACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000163963.8 |
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| CDS-3UTR GCA 90 bp | AGCCAAAAATCTCTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATAAACTCAATGAATGGTaGCACATCTCCTCCCCACAT | + |
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Preference number: 4 (lower is better) Translates to: SQKSLSFEGYCHNMPDFYKLNEW*HISSPH Trigger: ATGTGGGGAGGAGATGTGGCACCATTCATTGAGTTT...ATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR GCA 90 bp | AGCCAAAAATCTCTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATATCCGTGAGTTTGGTTaGTCCATCATCGTATGTAGC | + |
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Preference number: 4 (lower is better) Translates to: SQKSLSFEGYCHNMPDFYIREFG*SIIVCS Trigger: GCTACATACGATGATGGAGCAACCAAACTCACGGAT...ATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTTGGCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | GACCACTCTCCTGCAGAGTCAAAGTGCGTTCCTCCTCGCCTCTCGCTCCTTCCCCCACTCATCAAAACATaGTCCTCCAGGCAGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: DHSPAESKCVPPRLSLLPPLIKT*SSRQIL Trigger: CAAGATCTGCCTGGAGGACAATGTTTTGATGAGTGG...GGGAAGGAGCGAGAGGCGAGGAGGAACGCACTTTGACTCTGCAGGAGAGTGGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | GACCACTCTCCTGCAGAGTCAAAGTGCGTTCCTCCTCGCCTCTCGCTCCTTCCCTTTACCAAGGCAATATaGATTCCTCTTCCGACATTA | + |
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Preference number: 5 (lower is better) Translates to: DHSPAESKCVPPRLSLLPFTKAI*IPLPTL Trigger: TAATGTCGGAAGAGGAATCAATATTGCCTTGGTAAA...GGGAAGGAGCGAGAGGCGAGGAGGAACGCACTTTGACTCTGCAGGAGAGTGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | ATTCTTCACACCACTCATCAAACTCTGTCCAGACAGCAATCTGGAGTACTCGTCCGGCCACTACCAACTTaGCAGCTCCTGCTACCCTCA | + |
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Preference number: 5 (lower is better) Translates to: ILHTTHQTLSRQQSGVLVRPLPT*QLLLPS Trigger: TGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCCG...GACGAGTACTCCAGATTGCTGTCTGGACAGAGTTTGATGAGTGGTGTGAAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000163371.8 |
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| CDS-3UTR CAA 90 bp | AGTCTTCTCCCTCCCAGCAGCTTATGCAAATGGAAAGCCCATCTCTCAAAGGGTCCACTCATCAAAACATaGTCCTCCAGGCAGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: SLLPPSSLCKWKAHLSKGPLIKT*SSRQIL Trigger: CAAGATCTGCCTGGAGGACAATGTTTTGATGAGTGG...ACCCTTTGAGAGATGGGCTTTCCATTTGCATAAGCTGCTGGGAGGGAGAAGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | AAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGAACAACGGCCACTACCAACTTaGCAGCTCCTGCTACCCTCA | + |
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Preference number: 5 (lower is better) Translates to: KGTAITCQIFIQRHVYEQRPLPT*QLLLPS Trigger: TGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCCG...TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | CATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACCGGCCACTACCAACTTaGCAGCTCCTGCTACCCTCA | + |
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Preference number: 5 (lower is better) Translates to: HLKGTAITCQIFIQRHVYRPLPT*QLLLPS Trigger: TGAGGGTAGCAGGAGCTGCAAAGTTGGTAGTGGCCG...GTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | AAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGAACAACCACTCATCAAAACATaGTCCTCCAGGCAGATCTTG | + |
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Preference number: 5 (lower is better) Translates to: KGTAITCQIFIQRHVYEQPLIKT*SSRQIL Trigger: CAAGATCTGCCTGGAGGACAATGTTTTGATGAGTGG...TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | AGCCAAAAATCTCTTTCATTTGAAGGGTACTGCCATAACATGCCAGATTTTTATGCCTCATCCGTGAGTTaGGTTGCTCCATCATCGTAT | + |
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Preference number: 5 (lower is better) Translates to: SQKSLSFEGYCHNMPDFYASSVS*VAPSSY Trigger: ATACGATGATGGAGCAACCAAACTCACGGATGAGGC...ATAAAAATCTGGCATGTTATGGCAGTACCCTTCAAATGAAAGAGATTTTTGGCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | GAATTTCTTGGTTTACAAATCAAGGCTATGAGAGTCAAGTATTCCTGTCCTAAAGCCTCATCCGTGAGTTaGGTTGCTCCATCATCGTAT | + |
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Preference number: 5 (lower is better) Translates to: EFLGLQIKAMRVKYSCPKASSVS*VAPSSY Trigger: ATACGATGATGGAGCAACCAAACTCACGGATGAGGC...TTTAGGACAGGAATACTTGACTCTCATAGCCTTGATTTGTAAACCAAGAAATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165576.8 |
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| CDS-3UTR CAA 90 bp | AAGGGTACTGCCATAACATGCCAGATTTTTATACAGAGACACGTATACGAACAATTTACCAAGGCAATATaGATTCCTCTTCCGACATTA | + |
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Preference number: 5 (lower is better) Translates to: KGTAITCQIFIQRHVYEQFTKAI*IPLPTL Trigger: TAATGTCGGAAGAGGAATCAATATTGCCTTGGTAAA...TTGTTCGTATACGTGTCTCTGTATAAAAATCTGGCATGTTATGGCAGTACCCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000081288.14 ENSMUST00000163963.8 ENSMUST00000165576.8 |
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