Pregenerated sensors for FAM3B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022938Ensembl transcript IDs: ENSMUST00000049721.9, ENSMUST00000231414.2, ENSMUST00000231641.2, ENSMUST00000231999.2, ENSMUST00000232018.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTaGACTTCAAAGGATCAGACTCCTGTGACATTCAGC | + |
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Preference number: 3 (lower is better) Translates to: NCQIPVNTFLHS*TSKDQTPVTFS Trigger: GCTGAATGTCACAGGAGTCTGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | GTTTACAACAAACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCGGGGCACGTCAGGAATaGGCTCCGCGAGCAGGTACC | + |
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Preference number: 4 (lower is better) Translates to: VYNKLPNPRQHFPSQLDFGARQE*APRAGT Trigger: GGTACCTGCTCGCGGAGCTCATTCCTGACGTGCCCC...GAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTTTGTTGTAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CCA 90 bp | TTTCCTTCACAGCTGGACTTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTGGTGTCAGGAGGACATaGGGACCAATGGTCACATTT | + |
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Preference number: 4 (lower is better) Translates to: FPSQLDFKGSDSCDIQLSGVRRT*GPMVTF Trigger: AAATGTGACCATTGGTCCCCATGTCCTCCTGACACC...ACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAAGTCCAGCTGTGAAGGAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | TTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTATATCTGTACAAAACGTGAAGGAGTGCTCTGAATaGACTTGGCCATTGGCCCGG | + |
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Preference number: 4 (lower is better) Translates to: FKGSDSCDIQLSISVQNVKECSE*TWPLAR Trigger: CCGGGCCAATGGCCAAGTTCATTCAGAGCACTCCTT...CACGTTTTGTACAGATATACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | AACACTTTCCTTCACAGCTGGACTTCAAAGGATCAGACTCCTGTGACATTCAGCGAACTTCCATCATCATaGGTCACCATGAACAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NTFLHSWTSKDQTPVTFSELPSS*VTMNSR Trigger: CCTGCTGTTCATGGTGACTCATGATGATGGAAGTTC...GCTGAATGTCACAGGAGTCTGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR GCA 90 bp | TTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTATATCTGTACAAAACGTGGGATGTTGTAGAGAGTaGTGGACAGGGGCACGTCAG | + |
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Preference number: 4 (lower is better) Translates to: FKGSDSCDIQLSISVQNVGCCRE*WTGARQ Trigger: CTGACGTGCCCCTGTCCAGCACTCTCTACAACATCC...CACGTTTTGTACAGATATACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CCA 90 bp | AACAGTGTCTTAGTGGTTTACAACAAACTGCCAAATCCCCGTCAACACTTTCCTGATCTGGATCTCCGCTaGCCAGCCTGCATATCTGTT | + |
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Preference number: 4 (lower is better) Translates to: NSVLVVYNKLPNPRQHFPDLDLR*PACISV Trigger: AACAGATATGCAGGCTGGCCAGCGGAGATCCAGATC...AGGAAAGTGTTGACGGGGATTTGGCAGTTTGTTGTAAACCACTAAGACACTGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | GTTTACAACAAACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCGAACAGCAGGGATTTTaGAGGAGTGCTCTGAATGAA | + |
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Preference number: 4 (lower is better) Translates to: VYNKLPNPRQHFPSQLDFEQQGF*RSALNE Trigger: TTCATTCAGAGCACTCCTTCAAAATCCCTGCTGTTC...GAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTTTGTTGTAAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CCA 90 bp | CAAACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCAAAGGATCCTTGAGCCTTCAGTTTaGAACTTCCATCATCATGAG | + |
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Preference number: 4 (lower is better) Translates to: QTAKSPSTLSFTAGLQRILEPSV*NFHHHE Trigger: CTCATGATGATGGAAGTTCCAAACTGAAGGCTCAAG...GATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CCA 90 bp | TTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTATATCTGTACAAAACGTGTTCCAAGGGCTTCTATaGCATCCTTTGCTTGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: FKGSDSCDIQLSISVQNVFQGLL*HPLLEP Trigger: AGGCTCAAGCAAAGGATGCCATAGAAGCCCTTGGAA...CACGTTTTGTACAGATATACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | TTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTATATCTGTACAAAACGTGATGGCATCCTTTGCTTaGGCCTTCAGTTTGGAACTT | + |
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Preference number: 4 (lower is better) Translates to: FKGSDSCDIQLSISVQNVMASFA*AFSLEL Trigger: AAGTTCCAAACTGAAGGCTCAAGCAAAGGATGCCAT...CACGTTTTGTACAGATATACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR TCA 90 bp | CTTAGGATCCGTGTGATTAACAGTGTCTTAGTGGTTTACAACAAACTGCCAAATCATCATGAGTCACCATaGACAGCAGGGATTTTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LRIRVINSVLVVYNKLPNHHESP*TAGILK Trigger: CTTCAAAATCCCTGCTGTTCATGGTGACTCATGATG...ATTTGGCAGTTTGTTGTAAACCACTAAGACACTGTTAATCACACGGATCCTAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS TCA 90 bp | TGCTTCGGATGTTGTAGAGAGTGCTGGACAGGGGCACGTCAGGAATaGGCTCCGCGAGCAGGTACCCAGAATACCAGGCGCACAGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: CFGCCRECWTGARQE*APRAGTQNTRRTGR Trigger: CCTCCCTGTGCGCCTGGTATTCTGGGTACCTGCTCGCGGAGCTCATTCCTGACGTGCCCCTGTCCAGCACTCTCTACAACATCCGAAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 |
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| CDS TCA 90 bp | CATCCTCAAAGCAGATCTTGGCATACTTGTCGCGGCCACCACCACTaGGCAGCCGGTAGGCATAGGTGTCAGGAGGACATGGGGACCAAT | + |
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Preference number: 5 (lower is better) Translates to: HPQSRSWHTCRGHHH*AAGRHRCQEDMGTN Trigger: ATTGGTCCCCATGTCCTCCTGACACCTATGCCTACCGGCTGCTCAGTGGTGGTGGCCGCGACAAGTATGCCAAGATCTGCTTTGAGGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231999.2 |
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| CDS-3UTR CAA 90 bp | TGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCAAAGGATCAGACTTTGGGGGCTGGGGCTTaGAGAACAGGTCTCTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: CQIPVNTFLHSWTSKDQTLGAGA*RTGLSP Trigger: TGGAGAGAGACCTGTTCTCAAAGCCCCAGCCCCCAA...AGTCTGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CAA 90 bp | TTTACAACAAACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCACAGATCTTGGCATACTaGTCGCGGCCACCACCACTG | + |
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Preference number: 5 (lower is better) Translates to: FTTNCQIPVNTFLHSWTSQILAY*SRPPPL Trigger: CAGTGGTGGTGGCCGCGACAAGTATGCCAAGATCTG...TGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTTTGTTGTAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CAA 90 bp | AAACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCAAAGGATCATCCTCAAAGCAGATCTaGGCATACTTGTCGCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: KLPNPRQHFPSQLDFKGSSSKQI*AYLSRP Trigger: TGGCCGCGACAAGTATGCCAAGATCTGCTTTGAGGA...TGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS-3UTR CAA 90 bp | AACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCAAAGGATCAGCTTCTATGGCATCCTTaGCTTGAGCCTTCAGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: NCQIPVNTFLHSWTSKDQLLWHP*LEPSVW Trigger: CCAAACTGAAGGCTCAAGCAAAGGATGCCATAGAAG...CTGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS TCA 90 bp | TTTGGAACTTCCATCATCATGAGTCACCATGAACAGCAGGGATTTTaGAGGAGTGCTCTGAATGAACTTGGCCATTGGCCCGGAGTTATC | + |
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Preference number: 5 (lower is better) Translates to: FGTSIIMSHHEQQGF*RSALNELGHWPGVI Trigger: GATAACTCCGGGCCAATGGCCAAGTTCATTCAGAGCACTCCTTCAAAATCCCTGCTGTTCATGGTGACTCATGATGATGGAAGTTCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231641.2 ENSMUST00000231999.2 ENSMUST00000232018.2 |
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| CDS-3UTR CAA 90 bp | AACTGCCAAATCCCCGTCAACACTTTCCTTCACAGCTGGACTTCAAAGGATCAGATAAACACTAGTGCCTaGAAGATGCCTGTAGCAACT | + |
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Preference number: 5 (lower is better) Translates to: NCQIPVNTFLHSWTSKDQINTSA*KMPVAT Trigger: AGTTGCTACAGGCATCTTCAAGGCACTAGTGTTTAT...CTGATCCTTTGAAGTCCAGCTGTGAAGGAAAGTGTTGACGGGGATTTGGCAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS GCA 90 bp | CATGTTCTTGATTTCTTTGCTTCCAAGGGCTTCTATGGCATCCTTTaGTTGAGCCTTCAGTTTGGAACTTCCATCATCATGAGTCACCAT | + |
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Preference number: 5 (lower is better) Translates to: HVLDFFASKGFYGIL*LSLQFGTSIIMSHH Trigger: ATGGTGACTCATGATGATGGAAGTTCCAAACTGAAGGCTCAAGCAAAGGATGCCATAGAAGCCCTTGGAAGCAAAGAAATCAAGAACATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231641.2 ENSMUST00000231999.2 ENSMUST00000232018.2 |
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| CDS-3UTR CAA 90 bp | TTCAAAGGATCAGACTCCTGTGACATTCAGCTGAGTATATCTGTACAAAACGTGCTGAACTTCATGTTCTaGATTTCTTTGCTTCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: FKGSDSCDIQLSISVQNVLNFMF*ISLLPR Trigger: CCTTGGAAGCAAAGAAATCAAGAACATGAAGTTCAG...CACGTTTTGTACAGATATACTCAGCTGAATGTCACAGGAGTCTGATCCTTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049721.9 |
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| CDS TCA 72 bp | AGCAGATCTTGGCATACTTGTCGCGGCCACCACCACTaGGCAGCCGGTAGGCATAGGTGTCAGGAGGACATG | + |
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Preference number: 6 (lower is better) Translates to: SRSWHTCRGHHH*AAGRHRCQEDM Trigger: CATGTCCTCCTGACACCTATGCCTACCGGCTGCTCAGTGGTGGTGGCCGCGACAAGTATGCCAAGATCTGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231999.2 |
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| CDS TCA 72 bp | GTCACCATGAACAGCAGGGATTTTGAAGGAGTGCTCTaGATGAACTTGGCCATTGGCCCGGAGTTATCACCT | + |
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Preference number: 6 (lower is better) Translates to: VTMNSRDFEGVL*MNLAIGPELSP Trigger: AGGTGATAACTCCGGGCCAATGGCCAAGTTCATTCAGAGCACTCCTTCAAAATCCCTGCTGTTCATGGTGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231641.2 ENSMUST00000231999.2 ENSMUST00000232018.2 |
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| CDS TCA 72 bp | GAGCTCAAAGCCCTTTGCTGCAACAAACACCCAGCTTaGTCTGAACTTCATGTTCTTGATTTCTTTGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: ELKALCCNKHPA*SELHVLDFFAS Trigger: GGAAGCAAAGAAATCAAGAACATGAAGTTCAGATCAAGCTGGGTGTTTGTTGCAGCAAAGGGCTTTGAGCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231641.2 ENSMUST00000231999.2 ENSMUST00000232018.2 |
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| CDS CAA 90 bp | GTTCTTGATTTCTTTGCTTCCAAGGGCTTCTATGGCATCCTTTGCTaGAGCCTTCAGTTTGGAACTTCCATCATCATGAGTCACCATGAA | + |
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Preference number: 6 (lower is better) Translates to: VLDFFASKGFYGILC*SLQFGTSIIMSHHE Trigger: TTCATGGTGACTCATGATGATGGAAGTTCCAAACTGAAGGCTCAAGCAAAGGATGCCATAGAAGCCCTTGGAAGCAAAGAAATCAAGAAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231641.2 ENSMUST00000231999.2 ENSMUST00000232018.2 |
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| CDS TCA 72 bp | AGTACTTTGTCGCTATCACTTTTCCTGTCTCATAGTTaGCGACAGCAATGTTTATCCCTCTTGCCACATTCC | + |
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Preference number: 6 (lower is better) Translates to: STLSLSLFLSHS*RQQCLSLLPHS Trigger: GGAATGTGGCAAGAGGGATAAACATTGCTGTCGTCAACTATGAGACAGGAAAAGTGATAGCGACAAAGTACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000049721.9 ENSMUST00000231414.2 ENSMUST00000231999.2 |
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