Pregenerated sensors for FAM241A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050549Ensembl transcript IDs: ENSMUST00000057198.9, ENSMUST00000199273.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTGCAGGATTTCAGAAAGCCAAGTTCAATGTTCTCACACTATTCTaGTTCAGAATTTCTTGCAGAATAGCGTTTAAAATTGCATGGGTA | + |
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Preference number: 1 (lower is better) Translates to: CAGFQKAKFNVLTLF*FRISCRIAFKIAWV Trigger: TACCCATGCAATTTTAAACGCTATTCTGCAAGAAATTCTGAAGCAGAATAGTGTGAGAACATTGAACTTGGCTTTCTGAAATCCTGCACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR TCA 90 bp | TGCAAGCGGCTAGGGACAGTATGGCAGACACTGCCAGGCACCCGGCCGGCCGTGCCTGTTGCTGTTTTGTaGTATTCAGATTTGGCATGG | + |
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Preference number: 2 (lower is better) Translates to: CKRLGTVWQTLPGTRPAVPVAVL*YSDLAW Trigger: CCATGCCAAATCTGAATATCACAAAACAGCAACAGG...CACGGCCGGCCGGGTGCCTGGCAGTGTCTGCCATACTGTCCCTAGCCGCTTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR-3UTR CCA 90 bp | GACACTGCCAGGCACCCGGCCGGCCGTGGGACTCACAAAAAGAAATTAGCACCATGTAGTCATCTCCAATaGGTTCGCCAGAGTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: DTARHPAGRGTHKKKLAPCSHLQ*VRQSGF Trigger: AAAACCACTCTGGCGAACCCATTGGAGATGACTACA...TGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGCCTGGCAGTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| 3UTR-3UTR GCA 90 bp | GACACTGCCAGGCACCCGGCCGGCCGTGGGACTCACAAAAAGAAATTAGCACCATGCTATTTGCCCTGTTaGTGTTTTGTGATATTCAGA | + |
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Preference number: 2 (lower is better) Translates to: DTARHPAGRGTHKKKLAPCYLPC*CFVIFR Trigger: TCTGAATATCACAAAACAGCAACAGGGCAAATAGCA...TGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGCCTGGCAGTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR-3UTR CCA 90 bp | GCAAAGGCCTATGTTTATGTACAATCTAGAGATGCACAATATAGTCTGTGCTCCGCACCCGGCCGGCCGTaGGACTCACAAAAAGAAATT | + |
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Preference number: 2 (lower is better) Translates to: AKAYVYVQSRDAQYSLCSAPGRP*DSQKEI Trigger: AATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGC...GGAGCACAGACTATATTGTGCATCTCTAGATTGTACATAAACATAGGCCTTTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR CAA 90 bp | GCGTTCTCACCTTCGCAGCACGACAGCGGTACCATTTACTTTGTTTaGGACTACGCAGAGATAACAGAGACAAATATATTCCCAAAATGG | + |
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Preference number: 2 (lower is better) Translates to: AFSPSQHDSGTIYFV*DYAEITETNIFPKW Trigger: CCATTTTGGGAATATATTTGTCTCTGTTATCTCTGCGTAGTCCAAAACAAAGTAAATGGTACCGCTGTCGTGCTGCGAAGGTGAGAACGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR CAA 90 bp | ATGTACAATCTAGAGATGCACAATATAGTCTGTGCTCCTGAATTCTaGTTACTCTGTGCAGGATTTCAGAAAGCCAAGTTCAATGTTCTC | + |
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Preference number: 2 (lower is better) Translates to: MYNLEMHNIVCAPEF*LLCAGFQKAKFNVL Trigger: GAGAACATTGAACTTGGCTTTCTGAAATCCTGCACAGAGTAACAAGAATTCAGGAGCACAGACTATATTGTGCATCTCTAGATTGTACAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR GCA 90 bp | ACTTTACAATCCCAGGAAGGCCTGAGTACAACACATAAAAACTTACATTTAACCATTTTTCAACTGAGGTaGAGGTGGAAGAGTTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: TLQSQEGLSTTHKNLHLTIFQLR*RWKSFP Trigger: TGGAAAACTCTTCCACCTGCACCTCAGTTGAAAAAT...GGTTAAATGTAAGTTTTTATGTGTTGTACTCAGGCCTTCCTGGGATTGTAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGGAAAGAATGTACTCATTAGCATTTTGTGCACATATGCAAAAGCTCATGGACAACTGAGGTGCAGGTaGAAGAGTTTTCCAATTAAA | + |
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Preference number: 2 (lower is better) Translates to: LGKNVLISILCTYAKAHGQLRCR*KSFPIK Trigger: TTTAATTGGAAAACTCTTCCACCTGCACCTCAGTTG...TCCATGAGCTTTTGCATATGTGCACAAAATGCTAATGAGTACATTCTTTCCTAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR TCA 90 bp | AGGATTTCAGAAAGCCAAGTTCAATGTTCTCACACTATTCTGCTTCAGAATTTCTACAGATCACAGGAGTaGAAAAGAGTTTTAATAGGC | + |
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Preference number: 2 (lower is better) Translates to: RISESQVQCSHTILLQNFYRSQE*KRVLIG Trigger: GCCTATTAAAACTCTTTTTCACTCCTGTGATCTGTA...GAAATTCTGAAGCAGAATAGTGTGAGAACATTGAACTTGGCTTTCTGAAATCCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR GCA 90 bp | GTAGCACTAGGAAAGAATGTACTCATTAGCATTTTGTGCACATATGCAAAAGCTTGCTATTTGCCCTGTTaGTGTTTTGTGATATTCAGA | + |
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Preference number: 2 (lower is better) Translates to: VALGKNVLISILCTYAKACYLPC*CFVIFR Trigger: TCTGAATATCACAAAACAGCAACAGGGCAAATAGCA...AGCTTTTGCATATGTGCACAAAATGCTAATGAGTACATTCTTTCCTAGTGCTAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR CCA 90 bp | TTACAATCCCAGGAAGGCCTGAGTACAACACATAAAAACTTACATTTAACCCAATGTGATATTCAGATTTaGCATGGGAAAGCAGTATCT | + |
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Preference number: 2 (lower is better) Translates to: LQSQEGLSTTHKNLHLTQCDIQI*HGKAVS Trigger: AGATACTGCTTTCCCATGCCAAATCTGAATATCACA...TTGGGTTAAATGTAAGTTTTTATGTGTTGTACTCAGGCCTTCCTGGGATTGTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTTACAATCCCAGGAAGGCCTGAGTACAACACATAAAAACTTACATTTAACCTATCAGTTACATACATaGCTATCAAATGTCTGGTGT | + |
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Preference number: 2 (lower is better) Translates to: TLQSQEGLSTTHKNLHLTYQLHT*LSNVWC Trigger: ACACCAGACATTTGATAGCCATGTATGTAACTGATA...GGTTAAATGTAAGTTTTTATGTGTTGTACTCAGGCCTTCCTGGGATTGTAAAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR CCA 72 bp | CAGTATGGCAGACACTGCCAGGCACCCGGCCGGCCGTaGGACTCACAAAAAGAAATTAGCACCAGAATCATC | + |
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Preference number: 3 (lower is better) Translates to: QYGRHCQAPGRP*DSQKEISTRII Trigger: GATGATTCTGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGCCTGGCAGTGTCTGCCATACTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR GCA 72 bp | ATGACAAGGCAAAGAACGGCAACGAGTCCAAGGGCTTaGAGGCCCAGGAACCATAGCATAAGCCAAAAGAAA | + |
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Preference number: 3 (lower is better) Translates to: MTRQRTATSPRA*RPRNHSISQKK Trigger: TTTCTTTTGGCTTATGCTATGGTTCCTGGGCCTGCAAGCCCTTGGACTCGTTGCCGTTCTTTGCCTTGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| 3UTR GCA 72 bp | TCTCACTGCAACCCCATGCCATGCTATTTGCCCTGTTaGTGTTTTGTGATATTCAGATTTGGCATGGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SHCNPMPCYLPC*CFVIFRFGMGK Trigger: CTTTCCCATGCCAAATCTGAATATCACAAAACAGCAACAGGGCAAATAGCATGGCATGGGGTTGCAGTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR GCA 72 bp | CACATATGCAAAAGCTCATGGATTCTATTGGAACCTTaGAATCCTACTGTATACAAAGGAGACCTTTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: HICKSSWILLEP*NPTVYKGDLSP Trigger: GGGAGAAAGGTCTCCTTTGTATACAGTAGGATTGCAAGGTTCCAATAGAATCCATGAGCTTTTGCATATGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR CAA 90 bp | TGCAACCCCATGCCATGCTATTTGCCCTGTTGCTGTTTTGTGATATTCAGATTTATGTTGAGGAGGTTTTaGTTCAGTTCACCAAAAAGT | + |
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Preference number: 3 (lower is better) Translates to: CNPMPCYLPCCCFVIFRFMLRRF*FSSPKS Trigger: ACTTTTTGGTGAACTGAACAAAAACCTCCTCAACAT...AAATCTGAATATCACAAAACAGCAACAGGGCAAATAGCATGGCATGGGGTTGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| 3UTR CCA 72 bp | ATTTTGTGCACATATGCAAAAGCTCATGGATTCTATTaGAACCTTGCAATCCTACTGTATACAAAGGAGACC | + |
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Preference number: 3 (lower is better) Translates to: ILCTYAKAHGFY*NLAILLYTKET Trigger: GGTCTCCTTTGTATACAGTAGGATTGCAAGGTTCCAATAGAATCCATGAGCTTTTGCATATGTGCACAAAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAATCCCAGGAAGGCCTGAGTACAACACATAAAAACTTACATTTAACCCAAATGCTATTTGCCCTGTaGCTGTTTTGTGATATTCAG | + |
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Preference number: 3 (lower is better) Translates to: LQSQEGLSTTHKNLHLTQMLFAL*LFCDIQ Trigger: CTGAATATCACAAAACAGCAACAGGGCAAATAGCAT...TTGGGTTAAATGTAAGTTTTTATGTGTTGTACTCAGGCCTTCCTGGGATTGTAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTTACAATCCCAGGAAGGCCTGAGTACAACACATAAAAACTTACATTTAACCATGCTATTTGCCCTGTaGCTGTTTTGTGATATTCAG | + |
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Preference number: 3 (lower is better) Translates to: TLQSQEGLSTTHKNLHLTMLFAL*LFCDIQ Trigger: CTGAATATCACAAAACAGCAACAGGGCAAATAGCAT...GGTTAAATGTAAGTTTTTATGTGTTGTACTCAGGCCTTCCTGGGATTGTAAAGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR CCA 72 bp | CTTTCAAAAAGCCCAAGTGTATATCAGTTACATACATaGCTATCAAATGTCTGGTGTTTTACTGCTGTACAT | + |
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Preference number: 3 (lower is better) Translates to: LSKSPSVYQLHT*LSNVWCFTAVH Trigger: ATGTACAGCAGTAAAACACCAGACATTTGATAGCCATGTATGTAACTGATATACACTTGGGCTTTTTGAAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| CDS-3UTR CCA 90 bp | TGCAAGCGGCTAGGGACAGTATGGCAGACACTGCCAGGCACCCGGCCGGCCGTGTGTAGTCATCTCCAATaGGTTCGCCAGAGTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: CKRLGTVWQTLPGTRPAVCSHLQ*VRQSGF Trigger: AAAACCACTCTGGCGAACCCATTGGAGATGACTACA...CACGGCCGGCCGGGTGCCTGGCAGTGTCTGCCATACTGTCCCTAGCCGCTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS-3UTR TCA 90 bp | GCACCCGGCCGGCCGTGGGACTCACAAAAAGAAATTAGCACCAGAATCATCTCTCTTTCCAGAAGGATTTaGACTCGCTGCTCGCCCTCG | + |
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Preference number: 4 (lower is better) Translates to: APGRPWDSQKEISTRIISLSRRI*TRCSPS Trigger: CGAGGGCGAGCAGCGAGTTCAAATCCTTCTGGAAAG...AGAGATGATTCTGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| CDS-3UTR CCA 90 bp | GACACTGCCAGGCACCCGGCCGGCCGTGGGACTCACAAAAAGAAATTAGCACCAGAAAAGGACTACTACTaGTTCCACAATTCGTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: DTARHPAGRGTHKKKLAPEKDYY*FHNSFS Trigger: GGAGAACGAATTGTGGAACCAGTAGTAGTCCTTTTC...TGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGCCTGGCAGTGTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS-3UTR GCA 90 bp | TTTTGTGATATTCAGATTTGGCATGGGAAAGCAGTATCTAACAGTAGGTACAGAACGAGTCCAAGGGCTTaGAGGCCCAGGAACCATAGC | + |
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Preference number: 4 (lower is better) Translates to: FCDIQIWHGKAVSNSRYRTSPRA*RPRNHS Trigger: GCTATGGTTCCTGGGCCTGCAAGCCCTTGGACTCGT...TCTGTACCTACTGTTAGATACTGCTTTCCCATGCCAAATCTGAATATCACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR CAA 72 bp | ACTACACCATCTCACTGCAACCCCATGCCATGCTATTaGCCCTGTTGCTGTTTTGTGATATTCAGATTTGGC | + |
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Preference number: 4 (lower is better) Translates to: TTPSHCNPMPCY*PCCCFVIFRFG Trigger: GCCAAATCTGAATATCACAAAACAGCAACAGGGCAAATAGCATGGCATGGGGTTGCAGTGAGATGGTGTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR CAA 72 bp | CCTTCGCAGCACGACAGCGGTACCATTTACTTTGTTTaGGACTACGCAGAGATAACAGAGACAAATATATTC | + |
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Preference number: 4 (lower is better) Translates to: PSQHDSGTIYFV*DYAEITETNIF Trigger: GAATATATTTGTCTCTGTTATCTCTGCGTAGTCCAAAACAAAGTAAATGGTACCGCTGTCGTGCTGCGAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| CDS-3UTR CCA 90 bp | CTAGGAAAGAATGTACTCATTAGCATTTTGTGCACATATGCAAAAGCTCATGGAGCCAGAGTGGTTTTGTaGTTCTTCAATATCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: LGKNVLISILCTYAKAHGARVVL*FFNILL Trigger: GAGCAGGATATTGAAGAACCACAAAACCACTCTGGC...TCCATGAGCTTTTGCATATGTGCACAAAATGCTAATGAGTACATTCTTTCCTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS-3UTR CCA 90 bp | AGGATTTCAGAAAGCCAAGTTCAATGTTCTCACACTATTCTGCTTCAGAATTTCATGGGTTCGCCAGAGTaGTTTTGTGGTTCTTCAATA | + |
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Preference number: 4 (lower is better) Translates to: RISESQVQCSHTILLQNFMGSPE*FCGSSI Trigger: TATTGAAGAACCACAAAACCACTCTGGCGAACCCAT...GAAATTCTGAAGCAGAATAGTGTGAGAACATTGAACTTGGCTTTCTGAAATCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR CAA 72 bp | CATTTTGTGCACATATGCAAAAGCTCATGGATTCTATaGGAACCTTGCAATCCTACTGTATACAAAGGAGAC | + |
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Preference number: 4 (lower is better) Translates to: HFVHICKSSWIL*EPCNPTVYKGD Trigger: GTCTCCTTTGTATACAGTAGGATTGCAAGGTTCCAATAGAATCCATGAGCTTTTGCATATGTGCACAAAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| 3UTR CAA 72 bp | AACCCCATACTATACATTAGAAACATGACTGGACAATaGGCTTTAATCCTAGAATATTACAAGTGGCTACTG | + |
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Preference number: 4 (lower is better) Translates to: NPILYIRNMTGQ*ALILEYYKWLL Trigger: CAGTAGCCACTTGTAATATTCTAGGATTAAAGCCAATTGTCCAGTCATGTTTCTAATGTATAGTATGGGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000057198.9 ENSMUST00000199273.2 |
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| 3UTR CAA 72 bp | CGCCCTGTCAAACAAAAATGTCTCACCACCTCACTTTaGTATTTAAATTTCTTTGTTCAAATTGACGACTCT | + |
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Preference number: 4 (lower is better) Translates to: RPVKQKCLTTSL*YLNFFVQIDDS Trigger: AGAGTCGTCAATTTGAACAAAGAAATTTAAATACAAAAGTGAGGTGGTGAGACATTTTTGTTTGACAGGGCG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS GCA 90 bp | TCTCCAATGGGTTCGCCAGAGTGGTTTTGTGGTTCTTCAATATCCTaGTCGCCCTCGTCCTGCGGCCGCCGGCGCCGCGGGCTCGCCCCG | + |
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Preference number: 5 (lower is better) Translates to: SPMGSPEWFCGSSIS*SPSSCGRRRRGLAP Trigger: CGGGGCGAGCCCGCGGCGCCGGCGGCCGCAGGACGAGGGCGAGCAGGATATTGAAGAACCACAAAACCACTCTGGCGAACCCATTGGAGA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS CCA 90 bp | CATCTTTTTGTAGTCATCTCCAATGGGTTCGCCAGAGTGGTTTTGTaGTTCTTCAATATCCTGCTCGCCCTCGTCCTGCGGCCGCCGGCG | + |
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Preference number: 5 (lower is better) Translates to: HLFVVISNGFARVVL*FFNILLALVLRPPA Trigger: CGCCGGCGGCCGCAGGACGAGGGCGAGCAGGATATTGAAGAACCACAAAACCACTCTGGCGAACCCATTGGAGATGACTACAAAAAGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS-3UTR CAA 90 bp | GACACTGCCAGGCACCCGGCCGGCCGTGGGACTCACAAAAAGAAATTAGCACCAATGTTGAGGAGGTTTTaGTTCAGTTCACCAAAAAGT | + |
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Preference number: 5 (lower is better) Translates to: DTARHPAGRGTHKKKLAPMLRRF*FSSPKS Trigger: ACTTTTTGGTGAACTGAACAAAAACCTCCTCAACAT...TGGTGCTAATTTCTTTTTGTGAGTCCCACGGCCGGCCGGGTGCCTGGCAGTGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS-3UTR CAA 90 bp | TGCAACCCCATGCCATGCTATTTGCCCTGTTGCTGTTTTGTGATATTCAGATTTTCTTTCCAGAAGGATTaGAACTCGCTGCTCGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: CNPMPCYLPCCCFVIFRFSFQKD*NSLLAL Trigger: GAGGGCGAGCAGCGAGTTCAAATCCTTCTGGAAAGA...AAATCTGAATATCACAAAACAGCAACAGGGCAAATAGCATGGCATGGGGTTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000057198.9 |
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| CDS-3UTR CAA 90 bp | CCCTGTTGCTGTTTTGTGATATTCAGATTTGGCATGGGAAAGCAGTATCTAACATTCGCCAGAGTGGTTTaGTGGTTCTTCAATATCCTG | + |
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Preference number: 5 (lower is better) Translates to: PCCCFVIFRFGMGKQYLTFARVV*WFFNIL Trigger: CAGGATATTGAAGAACCACAAAACCACTCTGGCGAA...TGTTAGATACTGCTTTCCCATGCCAAATCTGAATATCACAAAACAGCAACAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS GCA 72 bp | GGTTCGCCAGAGTGGTTTTGTGGTTCTTCAATATCCTaGTCGCCCTCGTCCTGCGGCCGCCGGCGCCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: GSPEWFCGSSIS*SPSSCGRRRRG Trigger: CCCGCGGCGCCGGCGGCCGCAGGACGAGGGCGAGCAGGATATTGAAGAACCACAAAACCACTCTGGCGAACC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS CAA 90 bp | TCCCATCTTTTTGTAGTCATCTCCAATGGGTTCGCCAGAGTGGTTTaGTGGTTCTTCAATATCCTGCTCGCCCTCGTCCTGCGGCCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SHLFVVISNGFARVV*WFFNILLALVLRPP Trigger: CGGCGGCCGCAGGACGAGGGCGAGCAGGATATTGAAGAACCACAAAACCACTCTGGCGAACCCATTGGAGATGACTACAAAAAGATGGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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| CDS CAA 72 bp | TTTGTAGTCATCTCCAATGGGTTCGCCAGAGTGGTTTaGTGGTTCTTCAATATCCTGCTCGCCCTCGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FVVISNGFARVV*WFFNILLALVL Trigger: CAGGACGAGGGCGAGCAGGATATTGAAGAACCACAAAACCACTCTGGCGAACCCATTGGAGATGACTACAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199273.2 |
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