Pregenerated sensors for FAM240B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096537

Ensembl transcript IDs: ENSMUST00000180282.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR GCA 90 bp	AAAGAGCTGGATAACAGTTCCCACGAGCATGCACACTGTGGGGTTTaGATGGAAATCCTTTCTCAGATGGGAGAACAAGTAGGGGAAGCT	+
Preference number: 1 (lower is better) Translates to: KELDNSSHEHAHCGV*MEILSQMGEQVGEA Trigger: AGCTTCCCCTACTTGTTCTCCCATCTGAGAAAGGATTTCCATGCAAACCCCACAGTGTGCATGCTCGTGGGAACTGTTATCCAGCTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
3UTR-3UTR TCA 90 bp	CCAGAACCAGATTATACTTTGTGGATCTTGGAAACCCGGAGAGGGGTGCTAATTACCCTGTCTTCTCTGTaGAGAAGAAAGAGCTGGATA	+
Preference number: 2 (lower is better) Translates to: PEPDYTLWILETRRGVLITLSSL*RRKSWI Trigger: TATCCAGCTCTTTCTTCTTCACAGAGAAGACAGGGT...AATTAGCACCCCTCTCCGGGTTTCCAAGATCCACAAAGTATAATCTGGTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
3UTR GCA 72 bp	GATAACAGTTCCCACGAGCATGCACACTGTGGGGTTTaGATGGAAATCCTTTCTCAGATGGGAGAACAAGTA	+
Preference number: 3 (lower is better) Translates to: DNSSHEHAHCGV*MEILSQMGEQV Trigger: TACTTGTTCTCCCATCTGAGAAAGGATTTCCATGCAAACCCCACAGTGTGCATGCTCGTGGGAACTGTTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
CDS-3UTR TCA 90 bp	TTCCCACGAGCATGCACACTGTGGGGTTTGCATGGAAATCCTTTCTCAGATGGGTTTCCCAGAAGCTTTTaGGCTCATCGCAGGTCTCGC	+
Preference number: 4 (lower is better) Translates to: FPRACTLWGLHGNPFSDGFPRSF*AHRRSR Trigger: GCGAGACCTGCGATGAGCTCAAAAGCTTCTGGGAAA...CCCATCTGAGAAAGGATTTCCATGCAAACCCCACAGTGTGCATGCTCGTGGGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
3UTR CAA 72 bp	GGAGAGAATCCAGAACCAGATTATACTTTGTGGATCTaGGAAACCCGGAGAGGGGTGCTAATTCAAAGAGCT	+
Preference number: 4 (lower is better) Translates to: GENPEPDYTLWI*ETRRGVLIQRA Trigger: AGCTCTTTGAATTAGCACCCCTCTCCGGGTTTCCAAGATCCACAAAGTATAATCTGGTTCTGGATTCTCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
3UTR CAA 72 bp	TCTGGAGTTGTATGGAACCAGATTTCATTAAGGTCATaGCCTCAAGCAAGCTCAGAGAAAACATTTAGATTT	+
Preference number: 4 (lower is better) Translates to: SGVVWNQISLRS*PQASSEKTFRF Trigger: AAATCTAAATGTTTTCTCTGAGCTTGCTTGAGGCAATGACCTTAATGAAATCTGGTTCCATACAACTCCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
CDS-3UTR CAA 90 bp	TGCACACTGTGGGGTTTGCATGGAAATCCTTTCTCAGATGGGAGAACAAGTAGGTTTTCCCAGAAGCTTTaGAGCTCATCGCAGGTCTCG	+
Preference number: 5 (lower is better) Translates to: CTLWGLHGNPFSDGRTSRFSQKL*SSSQVS Trigger: CGAGACCTGCGATGAGCTCAAAAGCTTCTGGGAAAA...CCTACTTGTTCTCCCATCTGAGAAAGGATTTCCATGCAAACCCCACAGTGTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180282.2
CDS-3UTR CAA 90 bp	TGCACACTGTGGGGTTTGCATGGAAATCCTTTCTCAGATGGGAGAACAAGTAGGTTAGCCTGCTTTTCCTaGTCATCAGGATTATCCAGC	+
Preference number: 5 (lower is better) Translates to: CTLWGLHGNPFSDGRTSRLACFS*SSGLSS Trigger: GCTGGATAATCCTGATGACAAGGAAAAGCAGGCTAA...CCTACTTGTTCTCCCATCTGAGAAAGGATTTCCATGCAAACCCCACAGTGTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000180282.2

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