Pregenerated sensors for FAM240A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096393

Ensembl transcript IDs: ENSMUST00000177678.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GCTCACGGTTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAACACGGGGCGGGGCACTaGGGAAGGATGTGCAAGCAG	+
Preference number: 2 (lower is better) Translates to: AHGSEALGILAWLPCREEHGAGH*GRMCKQ Trigger: CTGCTTGCACATCCTTCCCCAGTGCCCCGCCCCGTG...TTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACCGTGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
3UTR GCA 72 bp	GGTTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTaGAGAGAGGAAGTAGCTGCCACGGGGCGGGGCACT	+
Preference number: 3 (lower is better) Translates to: GSEALGILAWLP*REEVAATGRGT Trigger: AGTGCCCCGCCCCGTGGCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR GCA 90 bp	GGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTGCCACGGGGCGGGGCATGGCAGCTGTTCCTaGAGAAGACCTCTCGACGGA	+
Preference number: 4 (lower is better) Translates to: GNLSLASLQRGSSCHGAGHGSCS*RRPLDG Trigger: TCCGTCGAGAGGTCTTCTGCAGGAACAGCTGCCATG...CCCCGCCCCGTGGCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR TCA 90 bp	TTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTGCCACGGGGCGGGGATGCGGGAAGCTCTaGGCTGACATTTGCTCGCTT	+
Preference number: 4 (lower is better) Translates to: LGILAWLPCREEVAATGRGCGKL*ADICSL Trigger: AAGCGAGCAAATGTCAGCTCAGAGCTTCCCGCATCC...CCGCCCCGTGGCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR TCA 90 bp	GCTCACGGTTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAATGGCTTCTAATGGAGTaGCCTCTGCGCCTCGGTCGG	+
Preference number: 4 (lower is better) Translates to: AHGSEALGILAWLPCREEWLLME*PLRLGR Trigger: CCGACCGAGGCGCAGAGGTCACTCCATTAGAAGCCA...TTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACCGTGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR CCA 90 bp	TCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTGCCCTTCTCAGCCTCGTCTaGGTTGTTCCGCAGCCTCAG	+
Preference number: 4 (lower is better) Translates to: SEALGILAWLPCREEVAALLSLV*VVPQPQ Trigger: CTGAGGCTGCGGAACAACCCAGACGAGGCTGAGAAG...GGCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR CCA 90 bp	CGGTTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCAACCGCTTGAGCTCATaGCAGCTGTTCCTGCAGAAG	+
Preference number: 4 (lower is better) Translates to: RFRGVGNLSLASLQRGSSNRLSS*QLFLQK Trigger: CTTCTGCAGGAACAGCTGCCATGAGCTCAAGCGGTT...GCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
3UTR CAA 72 bp	TCTGAGGCCTTGATACAAGCTCACGGTTCAGAGGCGTaGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAA	+
Preference number: 4 (lower is better) Translates to: SEALIQAHGSEA*GILAWLPCREE Trigger: TTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACCGTGAGCTTGTATCAAGGCCTCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR TCA 90 bp	TTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTGCGTTTCCATTCTTCTCTaGGTTTTCTCAGGGCGCTCC	+
Preference number: 4 (lower is better) Translates to: FRGVGNLSLASLQRGSSCVSILL*VFSGRS Trigger: GGAGCGCCCTGAGAAAACTCAGAGAAGAATGGAAAC...GCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR CAA 90 bp	AATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTGCCACGGGGCGGGGCACTCCGCAGCCTCAGCTTaGTCTCCAGCCTCTGTTTCC	+
Preference number: 5 (lower is better) Translates to: NLSLASLQRGSSCHGAGHSAASA*SPASVS Trigger: GGAAACAGAGGCTGGAGACAAAGCTGAGGCTGCGGA...GTGCCCCGCCCCGTGGCAGCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS TCA 90 bp	CTCTGTAGCACGCCTGCTTCCCGATCTCCCTCTCCCAGAACCGCTTaGGCTCATGGCAGCTGTTCCTGCAGAAGACCTCTCGACGGACAT	+
Preference number: 5 (lower is better) Translates to: LCSTPASRSPSPRTA*AHGSCSCRRPLDGH Trigger: ATGTCCGTCGAGAGGTCTTCTGCAGGAACAGCTGCCATGAGCTCAAGCGGTTCTGGGAGAGGGAGATCGGGAAGCAGGCGTGCTACAGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS-3UTR CAA 90 bp	CGGTTCAGAGGCGTTGGGAATCTTAGCCTGGCTTCCTTGCAGAGAGGAAGTAGCTCAGCCTCGTCTGGGTaGTTCCGCAGCCTCAGCTTT	+
Preference number: 5 (lower is better) Translates to: RFRGVGNLSLASLQRGSSSASSG*FRSLSF Trigger: AAAGCTGAGGCTGCGGAACAACCCAGACGAGGCTGA...GCTACTTCCTCTCTGCAAGGAAGCCAGGCTAAGATTCCCAACGCCTCTGAACCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS TCA 72 bp	CTCTGCGCCTCGGTCGGTTGCGGATGCGGGAAGCTCTaGGCTGACATTTGCTCGCTTCTCAGCCTCGTCTGG	+
Preference number: 6 (lower is better) Translates to: LCASVGCGCGKL*ADICSLLSLVW Trigger: CCAGACGAGGCTGAGAAGCGAGCAAATGTCAGCTCAGAGCTTCCCGCATCCGCAACCGACCGAGGCGCAGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS TCA 72 bp	CGCCTCGGTCGGTTGCGGATGCGGGAAGCTCTGAGCTaGCATTTGCTCGCTTCTCAGCCTCGTCTGGGTTGT	+
Preference number: 6 (lower is better) Translates to: RLGRLRMREALS*HLLASQPRLGC Trigger: ACAACCCAGACGAGGCTGAGAAGCGAGCAAATGTCAGCTCAGAGCTTCCCGCATCCGCAACCGACCGAGGCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2
CDS CCA 72 bp	TTCCCGATCTCCCTCTCCCAGAACCGCTTGAGCTCATaGCAGCTGTTCCTGCAGAAGACCTCTCGACGGACA	+
Preference number: 6 (lower is better) Translates to: FPISLSQNRLSS*QLFLQKTSRRT Trigger: TGTCCGTCGAGAGGTCTTCTGCAGGAACAGCTGCCATGAGCTCAAGCGGTTCTGGGAGAGGGAGATCGGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177678.2