Pregenerated sensors for FAM229A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078554Ensembl transcript IDs: ENSMUST00000106043.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGTGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTaGCCCGCGGCTGGCCTCGTCCGTCCCGGCTCCTGCAGAGCTGCC | + |
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Preference number: 1 (lower is better) Translates to: MCIIVSCSARATSAW*PAAGLVRPGSCRAA Trigger: GGCAGCTCTGCAGGAGCCGGGACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACAT 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| 3UTR CCA 90 bp | AAAATGTGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTaGTGGCCCGCGGCTGGCCTCGTCCGTCCCGGCTCCTGCAGAGCT | + |
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Preference number: 1 (lower is better) Translates to: KMCIIVSCSARATSA*WPAAGLVRPGSCRA Trigger: AGCTCTGCAGGAGCCGGGACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACATTTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| 3UTR-3UTR GCA 90 bp | TGTGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCGCGGGTCCGTCCCGGCTCCTaGAGAGCTGCCGTGCGCAGG | + |
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Preference number: 2 (lower is better) Translates to: CASLSRARRVRPQRGGPRVRPGS*RAAVRR Trigger: CCTGCGCACGGCAGCTCTGCAGGAGCCGGGACGGAC...CCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACA 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| 3UTR CCA 72 bp | ATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTaGCCCGCGGCTGGCCTCGTCCGTCCCGGCTCCTGC | + |
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Preference number: 3 (lower is better) Translates to: IVSCSARATSAW*PAAGLVRPGSC Trigger: GCAGGAGCCGGGACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAAT 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| 3UTR CCA 72 bp | ATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTaGTGGCCCGCGGCTGGCCTCGTCCGTCCCGGCTCC | + |
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Preference number: 3 (lower is better) Translates to: IIVSCSARATSA*WPAAGLVRPGS Trigger: GGAGCCGGGACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGAT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | CGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCGCGGCTGGCCTCGTCCGTCGGCTCCGGGCTATCCTaGGACTCGGGGGCGGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: RARRVRPQRGGPRLASSVGSGLS*DSGAEA Trigger: TGCCTCCGCCCCCGAGTCCCAGGATAGCCCGGAGCC...GACGGACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | CCGCGGCTGGCCTCGTCCGTCCCGGCTCCTGCAGAGCTGCCGTGCGCAGGCGCAAGGCCGGTCCCAGGCTaGAAGCAACTGCCCGAGCCC | + |
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Preference number: 4 (lower is better) Translates to: PRLASSVPAPAELPCAGARPVPG*KQLPEP Trigger: GGGCTCGGGCAGTTGCTTCCAGCCTGGGACCGGCCT...TGCGCCTGCGCACGGCAGCTCTGCAGGAGCCGGGACGGACGAGGCCAGCCGCGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | CCGCGGCTGGCCTCGTCCGTCCCGGCTCCTGCAGAGCTGCCGTGCGCAGGCGCAGGGGGCTCCCGCCCATaGCCAGGTAGACGTCGATGG | + |
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Preference number: 4 (lower is better) Translates to: PRLASSVPAPAELPCAGAGGSRP*PGRRRW Trigger: CCATCGACGTCTACCTGGCCATGGGCGGGAGCCCCC...TGCGCCTGCGCACGGCAGCTCTGCAGGAGCCGGGACGGACGAGGCCAGCCGCGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | TGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCGCGGCTGGCCTCGTGGTCCAGGCGGAGCCTaGCAGGTGTCTGCTGCGCGC | + |
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Preference number: 4 (lower is better) Translates to: CLVLGACDLSVVARGWPRGPGGA*QVSAAR Trigger: GCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACC...ACGAGGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACA 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | TGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCGCGGCTCCCTGTGGGGTCTCCTaGGCACTCATGTCCAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: CIIVSCSARATSAWWPAAPCGVS*ALMSRP Trigger: GGGCCTGGACATGAGTGCCCAGGAGACCCCACAGGG...AGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | TCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCGCGGCTGGCCAGTCTCCGGCCTCAATaGGGAATCTTCGACCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLSRARRVRPQRGGPRLASLRPQ*GIFDPV Trigger: CACAGGGTCGAAGATTCCCCATTGAGGCCGGAGACT...GGCCAGCCGCGGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGA 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR CCA 90 bp | AAAATGTGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGTGGCCCCCAGGTAGACGTCGATaGGCACGTGCAGCAGCGTCA | + |
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Preference number: 4 (lower is better) Translates to: KMCIIVSCSARATSAWWPPGRRR*ARAAAS Trigger: TGACGCTGCTGCACGTGCCCATCGACGTCTACCTGG...GGGCCACCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACATTTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS-3UTR GCA 90 bp | TATTTTAAAATGTGCATCATTGTCTCGTGCTCGGCGCGTGCGACCTCAGCGTGGACGTCGATGGGCACGTaGAGCAGCGTCAGACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: YFKMCIIVSCSARATSAWTSMGT*SSVRQW Trigger: CCACTGTCTGACGCTGCTGCACGTGCCCATCGACGT...CCACGCTGAGGTCGCACGCGCCGAGCACGAGACAATGATGCACATTTTAAAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS CCA 90 bp | GCCCGAGCCCTGGCCACGGGAGGACGCTCCGGTCCAGGCGGAGCCTaGCAGGTGTCTGCTGCGCGCCCGGGCCCCAGCGTCGAAGGGGAG | + |
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Preference number: 5 (lower is better) Translates to: ARALATGGRSGPGGA*QVSAARPGPSVEGE Trigger: CTCCCCTTCGACGCTGGGGCCCGGGCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACCGGAGCGTCCTCCCGTGGCCAGGGCTCGGGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS TCA 90 bp | AGACAGTGGCAGCCCGGGCAGCGTCGGAGCGGCCTGACAGGGTTTTaGTCCGTAGCTACAGGCTCCGGGCTATCCTGGGACTCGGGGGCG | + |
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Preference number: 5 (lower is better) Translates to: RQWQPGQRRSGLTGF*SVATGSGLSWDSGA Trigger: CGCCCCCGAGTCCCAGGATAGCCCGGAGCCTGTAGCTACGGATCAAAACCCTGTCAGGCCGCTCCGACGCTGCCCGGGCTGCCACTGTCT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS GCA 72 bp | ACGCTCCGGTCCAGGCGGAGCCTGGCAGGTGTCTGCTaGGCGCCCGGGCCCCAGCGTCGAAGGGGAGGACTG | + |
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Preference number: 6 (lower is better) Translates to: TLRSRRSLAGVC*APGPQRRRGGL Trigger: CAGTCCTCCCCTTCGACGCTGGGGCCCGGGCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACCGGAGCGT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS GCA 72 bp | AGGACGCTCCGGTCCAGGCGGAGCCTGGCAGGTGTCTaGTGCGCGCCCGGGCCCCAGCGTCGAAGGGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: RTLRSRRSLAGV*CAPGPQRRRGG Trigger: TCCTCCCCTTCGACGCTGGGGCCCGGGCGCGCAGCAGACACCTGCCAGGCTCCGCCTGGACCGGAGCGTCCT 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS CCA 72 bp | CCCGGGGGCTCCCGCCCATGGCCAGGTAGACGTCGATaGGCACGTGCAGCAGCGTCAGACAGTGGCAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: PGGSRPWPGRRR*ARAAASDSGSP Trigger: CGGGCTGCCACTGTCTGACGCTGCTGCACGTGCCCATCGACGTCTACCTGGCCATGGGCGGGAGCCCCCGGG 72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS GCA 72 bp | TCTCCTGGGCACTCATGTCCAGGCCCCGGGGCACTCTaGCAGAGGCCGAGGCCGGTCCCAGGCTGGAAGCAA | + |
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Preference number: 6 (lower is better) Translates to: SPGHSCPGPGAL*QRPRPVPGWKQ Trigger: TTGCTTCCAGCCTGGGACCGGCCTCGGCCTCTGGCAGAGTGCCCCGGGGCCTGGACATGAGTGCCCAGGAGA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS CAA 90 bp | CAGACAGTGGCAGCCCGGGCAGCGTCGGAGCGGCCTGACAGGGTTTaGATCCGTAGCTACAGGCTCCGGGCTATCCTGGGACTCGGGGGC | + |
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Preference number: 6 (lower is better) Translates to: QTVAARAASERPDRV*IRSYRLRAILGLGG Trigger: GCCCCCGAGTCCCAGGATAGCCCGGAGCCTGTAGCTACGGATCAAAACCCTGTCAGGCCGCTCCGACGCTGCCCGGGCTGCCACTGTCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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| CDS CCA 72 bp | GGGCGGAGGCAAGGCCAGGGGAGTCTCCGGCCTCAATaGGGAATCTTCGACCCTGTGGGGTCTCCTGGGCAC | + |
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Preference number: 6 (lower is better) Translates to: GRRQGQGSLRPQ*GIFDPVGSPGH Trigger: GTGCCCAGGAGACCCCACAGGGTCGAAGATTCCCCATTGAGGCCGGAGACTCCCCTGGCCTTGCCTCCGCCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000106043.3 |
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