Pregenerated sensors for FAM228B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050545Ensembl transcript IDs: ENSMUST00000053458.7, ENSMUST00000218199.2, ENSMUST00000218575.2, ENSMUST00000219898.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CAGCACCAGGATGGCCAATACTCTCTTCTAGACTCTGCAGGAACCTaGACCCATGCTCACAGATCCACGTGCAGGCTCACCCATATACAC | + |
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Preference number: 1 (lower is better) Translates to: QHQDGQYSLLDSAGT*THAHRSTCRLTHIH Trigger: GTGTATATGGGTGAGCCTGCACGTGGATCTGTGAGCATGGGTGCAGGTTCCTGCAGAGTCTAGAAGAGAGTATTGGCCATCCTGGTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR TCA 90 bp | ACTCATGGGCACTTTAAGCCATCCATTTGGAGTCATACTTTGCCTTaGATTAGAAATACTCGGGAATCTGGAATGCAACTGGGCCTTCTC | + |
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Preference number: 1 (lower is better) Translates to: THGHFKPSIWSHTLP*IRNTRESGMQLGLL Trigger: GAGAAGGCCCAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAGGCAAAGTATGACTCCAAATGGATGGCTTAAAGTGCCCATGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR-3UTR TCA 90 bp | GTACATGAGGAGTTCCAGACCAGCCCTGGAAACAGTGGGAACCTGTCTCAAAAACCCAATGCTGCTGTGTaGCAAAAGAGGCAGGTCAGT | + |
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Preference number: 2 (lower is better) Translates to: VHEEFQTSPGNSGNLSQKPNAAV*QKRQVS Trigger: ACTGACCTGCCTCTTTTGTCACACAGCAGCATTGGG...TTTTTGAGACAGGTTCCCACTGTTTCCAGGGCTGGTCTGGAACTCCTCATGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTGGGACCCAGGTTCAATaGCCAGCACCCACATGGTAC | + |
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Preference number: 2 (lower is better) Translates to: GSIPDTYIGSSQLPKTSAGTQVQ*PAPTWY Trigger: GTACCATGTGGGTGCTGGGCATTGAACCTGGGTCCC...AGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCTTTCAGAGGACCCAGGTTCAATTCCCGACACCTACATAGGCAGTTCACAAGCTCACAGATCCACGTaGAGGCTCACCCATATACAC | + |
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Preference number: 2 (lower is better) Translates to: SLSEDPGSIPDTYIGSSQAHRST*RLTHIH Trigger: GTGTATATGGGTGAGCCTGCACGTGGATCTGTGAGC...TTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTCTCGGGAATCTGGAATaGAACTGGGCCTTCTCGATC | + |
|
Preference number: 2 (lower is better) Translates to: GSIPDTYIGSSQLPKTSALGNLE*NWAFSI Trigger: GATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAG...AGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | ATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTCCAGAGCAAGTCTCCCAATGCTaGTGTGTGACAAAAGAGGCA | + |
|
Preference number: 2 (lower is better) Translates to: IPDTYIGSSQLPKTSAPEQVSQC*CVTKEA Trigger: TGCCTCTTTTGTCACACAGCAGCATTGGGAGACTTG...CTCTGGAGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR CCA 90 bp | TCTCTTTCAGAGGACCCAGGTTCAATTCCCGACACCTACATAGGCAGTTCACAAAGCCATAAAAAGTGCTaGCTTCTCTTTCAGAGGACC | + |
|
Preference number: 2 (lower is better) Translates to: SLSEDPGSIPDTYIGSSQSHKKC*LLFQRT Trigger: GGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCT...TTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | AACAGCCACTCTGACAGCTCACTGTTACCTTGTAACACCAGCACCAGGATGGCCATGTATAAACAGACATaGAGGCAAAACACCCATATA | + |
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Preference number: 2 (lower is better) Translates to: NSHSDSSLLPCNTSTRMAMYKQT*RQNTHI Trigger: TATATGGGTGTTTTGCCTGCATGTCTGTTTATACAT...GGCCATCCTGGTGCTGGTGTTACAAGGTAACAGTGAGCTGTCAGAGTGGCTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | CCCAGGTTCAATGCCCAGCACCCACATGGTACCTCACATTTAACTCCAGGCTCATGTATAGATTTTGCCTaGAAGAAAATTAGTGACCAG | + |
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Preference number: 2 (lower is better) Translates to: PRFNAQHPHGTSHLTPGSCIDFA*KKISDQ Trigger: CTGGTCACTAATTTTCTTGCAGGCAAAATCTATACA...TGAGCCTGGAGTTAAATGTGAGGTACCATGTGGGTGCTGGGCATTGAACCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218199.2 |
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| 3UTR-3UTR CCA 90 bp | AGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCAGGTTCAATTCCCGACAACACAAACAAAACATTaGGAAGGAGAGATGGCTAAG | + |
|
Preference number: 2 (lower is better) Translates to: SHKKCWLLFQRTQVQFPTTQTKH*EGEMAK Trigger: CTTAGCCATCTCTCCTTCCCAATGTTTTGTTTGTGT...TGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCTTTCAGAGGACCCAGGTTCAATTCCCGACACCTACATAGGCAGTTCACAAAAGAATTTCAATGTCTaGGAAGACCACACCTTCTAT | + |
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Preference number: 2 (lower is better) Translates to: SLSEDPGSIPDTYIGSSQKNFNV*EDHTFY Trigger: ATAGAAGGTGTGGTCTTCTCAGACATTGAAATTCTT...TTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR TCA 90 bp | ATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTCCAGAGTCCCTAAGAAATATTTaGAGTGATAATGGTCTAGCC | + |
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Preference number: 2 (lower is better) Translates to: IPDTYIGSSQLPKTSAPESLRNI*SDNGLA Trigger: GGCTAGACCATTATCACTTCAAATATTTCTTAGGGA...CTCTGGAGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR TCA 90 bp | GTCTGGAGAGATAGATCAGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCAGTCATACTTTGCCTTaGATTAGAAATACTCGGGAA | + |
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Preference number: 2 (lower is better) Translates to: VWRDRSAIKSAGFSFRGPSHTLP*IRNTRE Trigger: TTCCCGAGTATTTCTAATTCAAGGCAAAGTATGACT...GGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCTGATCTATCTCTCCAGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | AGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCAGGTTCAATTCCCGACAATAGGTAAAATAAAATaGCTAGTGCAGATACAGAGC | + |
|
Preference number: 2 (lower is better) Translates to: SHKKCWLLFQRTQVQFPTIGKIK*LVQIQS Trigger: GCTCTGTATCTGCACTAGGCATTTTATTTTACCTAT...TGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | CATCTTTCTAAAACAAACTGTCCAGGGGTCTGGAGAGATAGATCAGCCATAAAAAACCAAGTCTCCCAATaGTGCTGTGTGACAAAAGAG | + |
|
Preference number: 2 (lower is better) Translates to: HLSKTNCPGVWRDRSAIKNQVSQ*CCVTKE Trigger: CTCTTTTGTCACACAGCAGCATTGGGAGACTTGGTT...TTTTATGGCTGATCTATCTCTCCAGACCCCTGGACAGTTTGTTTTAGAAAGATG 42% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR TCA 90 bp | AATAAACCAAGTCTCCCAATGCTGCTGTGTGACAAAAGAGGCAGGTCAGTTTCTTCCCTAAGAAATATTTaGAGTGATAATGGTCTAGCC | + |
|
Preference number: 2 (lower is better) Translates to: NKPSLPMLLCDKRGRSVSSLRNI*SDNGLA Trigger: GGCTAGACCATTATCACTTCAAATATTTCTTAGGGA...AGAAACTGACCTGCCTCTTTTGTCACACAGCAGCATTGGGAGACTTGGTTTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR GCA 90 bp | GGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTATGTATAAACAGACATaGAGGCAAAACACCCATATA | + |
|
Preference number: 2 (lower is better) Translates to: GSIPDTYIGSSQLPKTSAMYKQT*RQNTHI Trigger: TATATGGGTGTTTTGCCTGCATGTCTGTTTATACAT...AGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR TCA 90 bp | AGAAATACTCGGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCAAGAATTTCAATGTCTaGGAAGACCACACCTTCTAT | + |
|
Preference number: 2 (lower is better) Translates to: RNTRESGMQLGLLDLFKFKNFNV*EDHTFY Trigger: ATAGAAGGTGTGGTCTTCTCAGACATTGAAATTCTT...GAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAGTATTTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR-3UTR TCA 90 bp | CGGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCTTTCATTGTAAGAATTTCAATGTCTaGGAAGACCACACCTTCTAT | + |
|
Preference number: 2 (lower is better) Translates to: RESGMQLGLLDLFKFFHCKNFNV*EDHTFY Trigger: ATAGAAGGTGTGGTCTTCTCAGACATTGAAATTCTT...ACAATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR-3UTR GCA 90 bp | CATCTTTCTAAAACAAACTGTCCAGGGGTCTGGAGAGATAGATCAGCCATAAAAATAGGTAAAATAAAATaGCTAGTGCAGATACAGAGC | + |
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Preference number: 2 (lower is better) Translates to: HLSKTNCPGVWRDRSAIKIGKIK*LVQIQS Trigger: GCTCTGTATCTGCACTAGGCATTTTATTTTACCTAT...TTTTATGGCTGATCTATCTCTCCAGACCCCTGGACAGTTTGTTTTAGAAAGATG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR GCA 72 bp | AGCACAGTGGCTATCCTCCAGGGGACCCAGGTTCAATaGCCAGCACCCACATGGTACCTCACATTTAACTCC | + |
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Preference number: 3 (lower is better) Translates to: STVAILQGTQVQ*PAPTWYLTFNS Trigger: GGAGTTAAATGTGAGGTACCATGTGGGTGCTGGGCATTGAACCTGGGTCCCCTGGAGGATAGCCACTGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR GCA 72 bp | GATGGCCAATACTCTCTTCTAGACTCTGCAGGAACCTaGACCCATGCTCACAGATCCACGTGCAGGCTCACC | + |
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Preference number: 3 (lower is better) Translates to: DGQYSLLDSAGT*THAHRSTCRLT Trigger: GGTGAGCCTGCACGTGGATCTGTGAGCATGGGTGCAGGTTCCTGCAGAGTCTAGAAGAGAGTATTGGCCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR GCA 72 bp | ATACTCTCTTCTAGACTCTGCAGGAACCTGCACCCATaGTCACAGATCCACGTGCAGGCTCACCCATATACA | + |
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Preference number: 3 (lower is better) Translates to: ILSSRLCRNLHP*SQIHVQAHPYT Trigger: TGTATATGGGTGAGCCTGCACGTGGATCTGTGAGCATGGGTGCAGGTTCCTGCAGAGTCTAGAAGAGAGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR CAA 90 bp | AGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCAGGTTCAATTCCCGACAAAGGGCTGGAGACTCTaGAGAGTGCCCAAGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: SHKKCWLLFQRTQVQFPTKGWRL*RVPKKN Trigger: ATTTTTCTTGGGCACTCTCAAGAGTCTCCAGCCCTT...TGTCGGGAATTGAACCTGGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR-3UTR CAA 90 bp | AGAAAAGGTAAAGTCAACCTATATCAAAGACTTACAGACCTGAGGGCATTATCCAAGGGCTGGAGACTCTaGAGAGTGCCCAAGAAAAAT | + |
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Preference number: 3 (lower is better) Translates to: RKGKVNLYQRLTDLRALSKGWRL*RVPKKN Trigger: ATTTTTCTTGGGCACTCTCAAGAGTCTCCAGCCCTT...GGATAATGCCCTCAGGTCTGTAAGTCTTTGATATAGGTTGACTTTACCTTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR TCA 72 bp | CACTTTAAGCCATCCATTTGGAGTCATACTTTGCCTTaGATTAGAAATACTCGGGAATCTGGAATGCAACTG | + |
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Preference number: 3 (lower is better) Translates to: HFKPSIWSHTLP*IRNTRESGMQL Trigger: CAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAGGCAAAGTATGACTCCAAATGGATGGCTTAAAGTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR GCA 72 bp | CTTTGCCTTGAATTAGAAATACTCGGGAATCTGGAATaGAACTGGGCCTTCTCGATCTCTTTAAATTCTTTC | + |
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Preference number: 3 (lower is better) Translates to: LCLELEILGNLE*NWAFSISLNSF Trigger: GAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAGGCAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR TCA 72 bp | AAGGTAAAGTCAACCTATATCAAAGACTTACAGACCTaGGGGCATTATCCACAGCCACAAATAGATAGACTT | + |
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Preference number: 3 (lower is better) Translates to: KVKSTYIKDLQT*GHYPQPQIDRL Trigger: AAGTCTATCTATTTGTGGCTGTGGATAATGCCCTCAGGTCTGTAAGTCTTTGATATAGGTTGACTTTACCTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| 3UTR CCA 72 bp | CTTGAATTAGAAATACTCGGGAATCTGGAATGCAACTaGGCCTTCTCGATCTCTTTAAATTCTTTCATTGTA | + |
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Preference number: 3 (lower is better) Translates to: LELEILGNLECN*AFSISLNSFIV Trigger: TACAATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| 3UTR CAA 72 bp | ATAGCTGGACTGCTAAGTCTTCTCCAGAGGACTGGCTaGTTTCCCAACAGCCACTCTGACAGCTCACTGTTA | + |
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Preference number: 4 (lower is better) Translates to: IAGLLSLLQRTG*FPNSHSDSSLL Trigger: TAACAGTGAGCTGTCAGAGTGGCTGTTGGGAAACAAGCCAGTCCTCTGGAGAAGACTTAGCAGTCCAGCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CCA 90 bp | CTATCTCAAGAAAGAATTTCAATGTCTGAGAAGACCACACCTTCTATCATGTCAGAAGGCAGAGGCAGGTaGACCTCTATGAGGCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: LSQERISMSEKTTPSIMSEGRGR*TSMRPA Trigger: GGCTGGCCTCATAGAGGTCCACCTGCCTCTGCCTTC...TGACATGATAGAAGGTGTGGTCTTCTCAGACATTGAAATTCTTTCTTGAGATAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218199.2 |
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| CDS-3UTR CCA 90 bp | AGTTCCAGACCAGCCCTGGAAACAGTGGGAACCTGTCTCAAAAAGCAAACACACTCTATAATTTTCTTCTaGAGAGGATCTGCCACACGT | + |
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Preference number: 4 (lower is better) Translates to: SSRPALETVGTCLKKQTHSIIFF*RGSATR Trigger: ACGTGTGGCAGATCCTCTCCAGAAGAAAATTATAGA...GTGTGTTTGCTTTTTGAGACAGGTTCCCACTGTTTCCAGGGCTGGTCTGGAACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR GCA 90 bp | CTTTCAGAGGACCCAGGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGAATTGGGGTCCTCTTTaGTCATATAAAAAGGATCAT | + |
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Preference number: 4 (lower is better) Translates to: LSEDPGSIPDTYIGSSQLNWGPL*SYKKDH Trigger: ATGATCCTTTTTATATGAGCAAAGAGGACCCCAATT...CAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACCTGGGTCCTCTGAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR GCA 90 bp | CTATCTCAAGAAAGAATTTCAATGTCTGAGAAGACCACACCTTCTATCATGTCACTCGGGAATCTGGAATaGAACTGGGCCTTCTCGATC | + |
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Preference number: 4 (lower is better) Translates to: LSQERISMSEKTTPSIMSLGNLE*NWAFSI Trigger: GATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAG...TGACATGATAGAAGGTGTGGTCTTCTCAGACATTGAAATTCTTTCTTGAGATAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053458.7 |
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| 3UTR CAA 72 bp | ATTGAAGATCAGAACAGAATGGTTAAGTGTCTTCCTTaGTCCCTCTCAAAAGGATTCCTCCCAGCAGGTAAC | + |
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Preference number: 4 (lower is better) Translates to: IEDQNRMVKCLP*SLSKGFLPAGN Trigger: GTTACCTGCTGGGAGGAATCCTTTTGAGAGGGACAAAGGAAGACACTTAACCATTCTGTTCTGATCTTCAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219898.2 |
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| CDS-3UTR TCA 90 bp | GGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTAGTCATACTTTGCCTTaGATTAGAAATACTCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: GSIPDTYIGSSQLPKTSASHTLP*IRNTRE Trigger: TTCCCGAGTATTTCTAATTCAAGGCAAAGTATGACT...AGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053458.7 |
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| CDS-3UTR GCA 90 bp | ATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTCCAGAGAATTGGGGTCCTCTTTaGTCATATAAAAAGGATCAT | + |
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Preference number: 4 (lower is better) Translates to: IPDTYIGSSQLPKTSAPENWGPL*SYKKDH Trigger: ATGATCCTTTTTATATGAGCAAAGAGGACCCCAATT...CTCTGGAGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CCA 90 bp | GGTTCAATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTGTCACCATATCATCTTaGCTCCTATTTTTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: GSIPDTYIGSSQLPKTSAVTISS*LLFFIV Trigger: CACAATGAAAAATAGGAGCCAAGATGATATGGTGAC...AGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAATTGAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CCA 90 bp | GGAGTCATACTTTGCCTTGAATTAGAAATACTCGGGAATCTGGAATGCAACTGGGTCACCATATCATCTTaGCTCCTATTTTTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: GVILCLELEILGNLECNWVTISS*LLFFIV Trigger: CACAATGAAAAATAGGAGCCAAGATGATATGGTGAC...CCAGTTGCATTCCAGATTCCCGAGTATTTCTAATTCAAGGCAAAGTATGACTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS-3UTR CCA 90 bp | CTCGGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCTTTCATTGTCACCATATCATCTTaGCTCCTATTTTTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: LGNLECNWAFSISLNSFIVTISS*LLFFIV Trigger: CACAATGAAAAATAGGAGCCAAGATGATATGGTGAC...AATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS-3UTR CCA 90 bp | GATCAGAACAGAATGGTTAAGTGTCTTCCTTTGTCCCTCTCAAAAGGATTCCTCGTCACCATATCATCTTaGCTCCTATTTTTCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: DQNRMVKCLPLSLSKGFLVTISS*LLFFIV Trigger: CACAATGAAAAATAGGAGCCAAGATGATATGGTGAC...GAGGAATCCTTTTGAGAGGGACAAAGGAAGACACTTAACCATTCTGTTCTGATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219898.2 |
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| 3UTR CAA 72 bp | GAAATGCCAAATATCGTGATGTCACAGATGATGTATTaGATGGTTCATCAGCACACACAAGGACACTCAATG | + |
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Preference number: 4 (lower is better) Translates to: EMPNIVMSQMMY*MVHQHTQGHSM Trigger: CATTGAGTGTCCTTGTGTGTGCTGATGAACCATCAAATACATCATCTGTGACATCACGATATTTGGCATTTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR GCA 90 bp | CTCGGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCTTTCATTAATTGGGGTCCTCTTTaGTCATATAAAAAGGATCAT | + |
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Preference number: 4 (lower is better) Translates to: LGNLECNWAFSISLNSFINWGPL*SYKKDH Trigger: ATGATCCTTTTTATATGAGCAAAGAGGACCCCAATT...AATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS-3UTR CAA 90 bp | ATCAGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCAGGTTCAATTCCCGGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: ISHKKCWLLFQRTQVQFPGSNHS*ELLSLG Trigger: CCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACC...CGGGAATTGAACCTGGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CAA 90 bp | ATTCCCGACACCTACATAGGCAGTTCACAACTGCCTAAAACTTCAGCTCCAGAGGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: IPDTYIGSSQLPKTSAPEGSNHS*ELLSLG Trigger: CCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACC...CTCTGGAGCTGAAGTTTTAGGCAGTTGTGAACTGCCTATGTAGGTGTCGGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CAA 90 bp | ATGTCACAGATGATGTATTTGATGGTTCATCAGCACACACAAGGACACTCAATGTTGGAGCTCTTGAGCTaGGGGAGTGTGCCCGTCACC | + |
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Preference number: 5 (lower is better) Translates to: MSQMMYLMVHQHTQGHSMLELLS*GSVPVT Trigger: GGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAA...CATTGAGTGTCCTTGTGTGTGCTGATGAACCATCAAATACATCATCTGTGACAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CAA 90 bp | GGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCTTTCATTGTAGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: GNLECNWAFSISLNSFIVGSNHS*ELLSLG Trigger: CCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACC...TACAATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS-3UTR CAA 90 bp | AAGATCAGAACAGAATGGTTAAGTGTCTTCCTTTGTCCCTCTCAAAAGGATTCCGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGG | + |
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Preference number: 5 (lower is better) Translates to: KIRTEWLSVFLCPSQKDSGSNHS*ELLSLG Trigger: CCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACC...GGAATCCTTTTGAGAGGGACAAAGGAAGACACTTAACCATTCTGTTCTGATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000219898.2 |
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| CDS-3UTR CAA 90 bp | GTCTGGAGAGATAGATCAGCCATAAAAAGTGCTGGCTTCTCTTTCAGAGGACCCCGTCACCATATCATCTaGGCTCCTATTTTTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: VWRDRSAIKSAGFSFRGPRHHII*APIFHC Trigger: ACAATGAAAAATAGGAGCCAAGATGATATGGTGACG...GGGTCCTCTGAAAGAGAAGCCAGCACTTTTTATGGCTGATCTATCTCTCCAGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS-3UTR CAA 90 bp | TTAAGTGTCTTCCTTTGTCCCTCTCAAAAGGATTCCTCCCAGCAGGTAACTTCCCGTCACCATATCATCTaGGCTCCTATTTTTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: LSVFLCPSQKDSSQQVTSRHHII*APIFHC Trigger: ACAATGAAAAATAGGAGCCAAGATGATATGGTGACG...GGAAGTTACCTGCTGGGAGGAATCCTTTTGAGAGGGACAAAGGAAGACACTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000219898.2 |
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| CDS-3UTR CAA 90 bp | CTCGGGAATCTGGAATGCAACTGGGCCTTCTCGATCTCTTTAAATTCTTTCATTCGTCACCATATCATCTaGGCTCCTATTTTTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: LGNLECNWAFSISLNSFIRHHII*APIFHC Trigger: ACAATGAAAAATAGGAGCCAAGATGATATGGTGACG...AATGAAAGAATTTAAAGAGATCGAGAAGGCCCAGTTGCATTCCAGATTCCCGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS-3UTR CAA 90 bp | ATGTCACAGATGATGTATTTGATGGTTCATCAGCACACACAAGGACACTCAATGCGTCACCATATCATCTaGGCTCCTATTTTTCATTGT | + |
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Preference number: 5 (lower is better) Translates to: MSQMMYLMVHQHTQGHSMRHHII*APIFHC Trigger: ACAATGAAAAATAGGAGCCAAGATGATATGGTGACG...CATTGAGTGTCCTTGTGTGTGCTGATGAACCATCAAATACATCATCTGTGACAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 |
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| CDS CAA 72 bp | GACTGTGGTTCCAACCATTCTTTGGAGCTCTTGAGCTaGGGGAGTGTGCCCGTCACCATATCATCTTGGCTC | + |
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Preference number: 6 (lower is better) Translates to: DCGSNHSLELLS*GSVPVTISSWL Trigger: GAGCCAAGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS CAA 72 bp | GAAAGCGACTGTGGTTCCAACCATTCTTTGGAGCTCTaGAGCTTGGGGAGTGTGCCCGTCACCATATCATCT | + |
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Preference number: 6 (lower is better) Translates to: ESDCGSNHSLEL*SLGSVPVTISS Trigger: AGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS CAA 72 bp | TCCATAAAAGAAAGCGACTGTGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGGAGTGTGCCCGTCACC | + |
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Preference number: 6 (lower is better) Translates to: SIKESDCGSNHS*ELLSLGSVPVT Trigger: GGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTCTTTTATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS TCA 72 bp | AAAGCGACTGTGGTTCCAACCATTCTTTGGAGCTCTTaGGCTTGGGGAGTGTGCCCGTCACCATATCATCTT | + |
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Preference number: 6 (lower is better) Translates to: KATVVPTILWSS*AWGVCPSPYHL Trigger: AAGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS CAA 90 bp | TCCATAAAAGAAAGCGACTGTGGTTCCAACCATTCTTTGGAGCTCTaGAGCTTGGGGAGTGTGCCCGTCACCATATCATCTTGGCTCCTA | + |
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Preference number: 6 (lower is better) Translates to: SIKESDCGSNHSLEL*SLGSVPVTISSWLL Trigger: TAGGAGCCAAGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTCTTTTATGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS CAA 90 bp | GCTAAAGCCTCCATAAAAGAAAGCGACTGTGGTTCCAACCATTCTTaGGAGCTCTTGAGCTTGGGGAGTGTGCCCGTCACCATATCATCT | + |
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Preference number: 6 (lower is better) Translates to: AKASIKESDCGSNHS*ELLSLGSVPVTISS Trigger: AGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTCTTTTATGGAGGCTTTAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 |
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| CDS CAA 90 bp | AAAGAAAGCGACTGTGGTTCCAACCATTCTTTGGAGCTCTTGAGCTaGGGGAGTGTGCCCGTCACCATATCATCTTGGCTCCTATTTTTC | + |
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Preference number: 6 (lower is better) Translates to: KESDCGSNHSLELLS*GSVPVTISSWLLFF Trigger: GAAAAATAGGAGCCAAGATGATATGGTGACGGGCACACTCCCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTCTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000053458.7 ENSMUST00000218199.2 ENSMUST00000218575.2 ENSMUST00000219898.2 |
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| CDS CCA 72 bp | TGTGGCTGTCAAAACCTCCATAAAAGAAAGCGACTGTaGTTCCAACCATTCTTTGGAGCTCTTGAGCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: CGCQNLHKRKRL*FQPFFGALELG Trigger: CCCAAGCTCAAGAGCTCCAAAGAATGGTTGGAACCACAGTCGCTTTCTTTTATGGAGGTTTTGACAGCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000219898.2 |
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