Pregenerated sensors for FAM227B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027209Ensembl transcript IDs: ENSMUST00000110446.9, ENSMUST00000110448.3, ENSMUST00000178118.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATACACGCCTGCTGCCATaGATGGTGGTTGTGCAGAGG | + |
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Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNTRLLP*MVVVQR Trigger: CCTCTGCACAACCACCATTCATGGCAGCAGGCGTGT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCAGGTACACGCCTGCTaGCATGAATGGTGGTTGTGC | + |
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Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNQVHAC*HEWWLC Trigger: GCACAACCACCATTCATGGCAGCAGGCGTGTACCTG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCCCGGAGTATCTTGGTaGACTTGGTTCCCTTCGGAT | + |
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Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNPGVSW*TWFPSD Trigger: ATCCGAAGGGAACCAAGTTCACCAAGATACTCCGGG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGTATGTTGGAGCAGGTaGTGGCTCCCGGAGTATCTT | + |
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Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNVCWSR*WLPEYL Trigger: AAGATACTCCGGGAGCCATCACCTGCTCCAACATAC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGCCTGCTGCCATGAATaGTGGTTGTGCAGAGGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNACCHE*WLCRGL Trigger: AAGACCTCTGCACAACCACCATTCATGGCAGCAGGC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGTTGTGCAGAGGTCTTaGAGTTTCCAGTGGGTCCAA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNVVQRS*SFQWVQ Trigger: TTGGACCCACTGGAAACTGCAAGACCTCTGCACAAC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTGCTGCCATGAATGGTaGTTGTGCAGAGGTCTTGCA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNCCHEW*LCRGLA Trigger: TGCAAGACCTCTGCACAACCACCATTCATGGCAGCA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCTGGAGGCATGGTGTTaGAAAAGATGTGAGCTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNLEAWC*KRCELS Trigger: GGAAAGCTCACATCTTTTGCAACACCATGCCTCCAG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATAGAATCAGTGGGCTCTaGCCTCCAAAGTCAAAGAGA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNRISGL*PPKSKR Trigger: TCTCTTTGACTTTGGAGGCCAGAGCCCACTGATTCT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATATAGTACAGAATCAGTaGGCTCTGGCCTCCAAAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNIVQNQ*ALASKV Trigger: GACTTTGGAGGCCAGAGCCCACTGATTCTGTACTAT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATAGCAATGGAGCAATCTaGGAGAACATGGGTTTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSNGAI*ENMGFP Trigger: TGGAAAACCCATGTTCTCTCAGATTGCTCCATTGCT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGCAGGATTCTGGAAATaGTTCCTGGAAGGTTGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNAGFWK*FLEGCV Trigger: TACACAACCTTCCAGGAATCATTTCCAGAATCCTGC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTCAAAGAGAACTTTGTaGAACTCTGGACCCAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSKRTL*NSGPKL Trigger: GAGCTTGGGTCCAGAGTTTCACAAAGTTCTCTTTGA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCTCCATATTCCTCCTTaGGTTTTGCCTCAACACGTT | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNLHIPP*VLPQHV Trigger: AACGTGTTGAGGCAAAACTCAAGGAGGAATATGGAG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCACCAAAAGGAGTCATaGAAAAGAGCAATGGAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNHQKES*KRAMEQ Trigger: TTGCTCCATTGCTCTTTTGCATGACTCCTTTTGGTG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTATAGTGGGAAGGCTTaGTTGCTGCTTTTGATGCTA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNYSGKA*LLLLML Trigger: TAGCATCAAAAGCAGCAACCAAGCCTTCCCACTATA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCTTCTTGGAGATTTTTaGAAGCCTTTGCTTGGATCC | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNLLGDF*KPLLGS Trigger: GGATCCAAGCAAAGGCTTCCAAAAATCTCCAAGAAG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR TCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCTCTTTTGTCAGGCTTaGATTTATGTAGAAACCACC | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNLFCQA*IYVETT Trigger: GGTGGTTTCTACATAAATTCAAGCCTGACAAAAGAG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTTCCTCCTTGAGTTTTaGCTCAACACGTTGTTTATG | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNFLLEF*LNTLFM Trigger: CATAAACAACGTGTTGAGGCAAAACTCAAGGAGGAA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATAATAATCTGGAGGCATaGTGTTGCAAAAGATGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNNNLEA*CCKRCE Trigger: CTCACATCTTTTGCAACACCATGCCTCCAGATTATT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR GCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTCAATTAGTTCCTGTTaGTCTCTCAGGAACTTGATA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSISSC*SLRNLI Trigger: TATCAAGTTCCTGAGAGAGCAACAGGAACTAATTGA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCACTTTCAAATAATCTaGAGGCATGGTGTTGCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNHFQII*RHGVAK Trigger: TTTTGCAACACCATGCCTCCAGATTATTTGAAAGTG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CCA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCAATCTGAGAGAACATaGGTTTTCCAGACTTTAAAT | + |
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Preference number: 4 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNQSERT*VFQTLN Trigger: ATTTAAAGTCTGGAAAACCCATGTTCTCTCAGATTG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS CCA 90 bp | CGCTCCTTCTCAACTTCACAGGTACACGCCTGCTGCCATGAATGGTaGTTGTGCAGAGGTCTTGCAGTTTCCAGTGGGTCCAAAAGCCAG | + |
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Preference number: 5 (lower is better) Translates to: RSFSTSQVHACCHEW*LCRGLAVSSGSKSQ Trigger: CTGGCTTTTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATGGCAGCAGGCGTGTACCTGTGAAGTTGAGAAGGAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS TCA 90 bp | GGAATGACGCTCCTTCTCAACTTCACAGGTACACGCCTGCTGCCATaGATGGTGGTTGTGCAGAGGTCTTGCAGTTTCCAGTGGGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: GMTLLLNFTGTRLLP*MVVVQRSCSFQWVQ Trigger: TTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATGGCAGCAGGCGTGTACCTGTGAAGTTGAGAAGGAGCGTCATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS GCA 90 bp | TTCTCAACTTCACAGGTACACGCCTGCTGCCATGAATGGTGGTTGTaGAGAGGTCTTGCAGTTTCCAGTGGGTCCAAAAGCCAGTTTCAG | + |
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Preference number: 5 (lower is better) Translates to: FSTSQVHACCHEWWL*RGLAVSSGSKSQFQ Trigger: CTGAAACTGGCTTTTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATGGCAGCAGGCGTGTACCTGTGAAGTTGAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS TCA 90 bp | TTTTCTTTTGGCATCCCTGATGATGTCGCAGTATGTTGGAGCAGGTaGTGGCTCCCGGAGTATCTTGGTGAACTTGGTTCCCTTCGGATT | + |
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Preference number: 5 (lower is better) Translates to: FSFGIPDDVAVCWSR*WLPEYLGELGSLRI Trigger: AATCCGAAGGGAACCAAGTTCACCAAGATACTCCGGGAGCCATCACCTGCTCCAACATACTGCGACATCATCAGGGATGCCAAAAGAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000110446.9 ENSMUST00000178118.8 |
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| CDS CCA 90 bp | AGAATATCCTCGATTTTCAAGTCTCTAATGCCTGGTATGTGCTCCTaGCTGGGAATGACGCTCCTTCTCAACTTCACAGGTACACGCCTG | + |
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Preference number: 5 (lower is better) Translates to: RISSIFKSLMPGMCS*LGMTLLLNFTGTRL Trigger: CAGGCGTGTACCTGTGAAGTTGAGAAGGAGCGTCATTCCCAGCCAGGAGCACATACCAGGCATTAGAGACTTGAAAATCGAGGATATTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGGTTGTGCAGAGGTCTaGCAGTTTCCAGTGGGTCCA | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNGCAEV*QFPVGP Trigger: TGGACCCACTGGAAACTGCAAGACCTCTGCACAACC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS GCA 90 bp | AAGTCTTCTGATATAGTAGGAAATGACGATGATGATTGTGGTGACTaGATCGACTGTGGCGACTCTGATGCTGATGTTGATCCTCCATAT | + |
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Preference number: 5 (lower is better) Translates to: KSSDIVGNDDDDCGD*IDCGDSDADVDPPY Trigger: ATATGGAGGATCAACATCAGCATCAGAGTCGCCACAGTCGATGCAGTCACCACAATCATCATCGTCATTTCCTACTATATCAGAAGACTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATAGTGGGAAGGCTTGGTaGCTGCTTTTGATGCTACGG | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSGKAW*LLLMLR Trigger: CCGTAGCATCAAAAGCAGCAACCAAGCCTTCCCACT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTGCCATGAATGGTGGTaGTGCAGAGGTCTTGCAGTT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNCHEWW*CRGLAV Trigger: AACTGCAAGACCTCTGCACAACCACCATTCATGGCA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTTTGGAAGCCTTTGCTaGGATCCGGTCAAGCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNFGSLC*DPVKLL Trigger: AAGGAGCTTGACCGGATCCAAGCAAAGGCTTCCAAA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGATTTTTGGAAGCCTTaGCTTGGATCCGGTCAAGCT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNDFWKP*LGSGQA Trigger: AGCTTGACCGGATCCAAGCAAAGGCTTCCAAAAATC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCCTCCATATTCCTCCTaGAGTTTTGCCTCAACACGT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNPPYSS*SFASTR Trigger: ACGTGTTGAGGCAAAACTCAAGGAGGAATATGGAGG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS TCA 90 bp | ACTGTGGCGACTCTGATGCTGATGTTGATCCTCCATATTCCTCCTTaGGTTTTGCCTCAACACGTTGTTTATGTAGAAAATTCTCAAATT | + |
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Preference number: 5 (lower is better) Translates to: TVATLMLMLILHIPP*VLPQHVVYVENSQI Trigger: AATTTGAGAATTTTCTACATAAACAACGTGTTGAGGCAAAACTCAAGGAGGAATATGGAGGATCAACATCAGCATCAGAGTCGCCACAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATATGATTCCTGGAAGGTaGTGTAGACAGCTTGAGTCA | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNMIPGR*CRQLES Trigger: TGACTCAAGCTGTCTACACAACCTTCCAGGAATCAT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTCTGCAAATTTTCTTTaGGCATCCCTGATGATGTCG | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSANFL*ASLMMS Trigger: CGACATCATCAGGGATGCCAAAAGAAAATTTGCAGA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATACTTCTTGGAGATTTTaGGAAGCCTTTGCTTGGATC | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNTSWRF*EAFAWI Trigger: GATCCAAGCAAAGGCTTCCAAAAATCTCCAAGAAGT...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATGTCACTTCATTTTGGTaGAATAAAAAGGTGCAACCC | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNVTSFW*NKKVQP Trigger: GGGTTGCACCTTTTTATTCAACCAAAATGAAGTGAC...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATCCCTCTTCCACATTGTaGAAGTCTTCTGATATAGTA | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNPSSTL*KSSDIV Trigger: TACTATATCAGAAGACTTCAACAATGTGGAAGAGGG...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTCTTTGAATTTATCATaGAAGAGGCTGCAGGATTCT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNSLNLS*KRLQDS Trigger: AGAATCCTGCAGCCTCTTCAATGATAAATTCAAAGA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS-3UTR CAA 90 bp | TTGAACACTGCTCCAATTAAACTGATACAACTGAACTGTGTGTTGCTCTTGAATTGCTCTCTCAGGAACTaGATATCATCTTTGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: LNTAPIKLIQLNCVLLLNCSLRN*ISSLIL Trigger: AAGAATCAAAGATGATATCAAGTTCCTGAGAGAGCA...ATTCAAGAGCAACACACAGTTCAGTTGTATCAGTTTAATTGGAGCAGTGTTCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110446.9 |
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| CDS TCA 72 bp | GGCATCCCTGATGATGTCGCAGTATGTTGGAGCAGGTaGTGGCTCCCGGAGTATCTTGGTGAACTTGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GIPDDVAVCWSR*WLPEYLGELGS Trigger: GGAACCAAGTTCACCAAGATACTCCGGGAGCCATCACCTGCTCCAACATACTGCGACATCATCAGGGATGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000110446.9 ENSMUST00000178118.8 |
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| CDS CAA 72 bp | ACGCCTGCTGCCATGAATGGTGGTTGTGCAGAGGTCTaGCAGTTTCCAGTGGGTCCAAAAGCCAGTTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: TPAAMNGGCAEV*QFPVGPKASFR Trigger: CCTGAAACTGGCTTTTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATGGCAGCAGGCGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 90 bp | TCCTTCTCAACTTCACAGGTACACGCCTGCTGCCATGAATGGTGGTaGTGCAGAGGTCTTGCAGTTTCCAGTGGGTCCAAAAGCCAGTTT | + |
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Preference number: 6 (lower is better) Translates to: SFSTSQVHACCHEWW*CRGLAVSSGSKSQF Trigger: AAACTGGCTTTTGGACCCACTGGAAACTGCAAGACCTCTGCACAACCACCATTCATGGCAGCAGGCGTGTACCTGTGAAGTTGAGAAGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CCA 72 bp | TCGATTTTCAAGTCTCTAATGCCTGGTATGTGCTCCTaGCTGGGAATGACGCTCCTTCTCAACTTCACAGGT | + |
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Preference number: 6 (lower is better) Translates to: SIFKSLMPGMCS*LGMTLLLNFTG Trigger: ACCTGTGAAGTTGAGAAGGAGCGTCATTCCCAGCCAGGAGCACATACCAGGCATTAGAGACTTGAAAATCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 90 bp | ATCTGGAGGCATGGTGTTGCAAAAGATGTGAGCTTTCCTTTAATTTaGACTCCAAGCTGTCGACGATATCATACAGCCGAGGCACGTTGG | + |
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Preference number: 6 (lower is better) Translates to: IWRHGVAKDVSFPLI*TPSCRRYHTAEARW Trigger: CCAACGTGCCTCGGCTGTATGATATCGTCGACAGCTTGGAGTCAAAATTAAAGGAAAGCTCACATCTTTTGCAACACCATGCCTCCAGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS TCA 72 bp | CAAGCTCCTATAGTGGGAAGGCTTGGTTGCTGCTTTTaGTGCTACGGACTCTTTCATGAGTTTAGGCATTGC | + |
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Preference number: 6 (lower is better) Translates to: QAPIVGRLGCCF*CYGLFHEFRHC Trigger: GCAATGCCTAAACTCATGAAAGAGTCCGTAGCATCAAAAGCAGCAACCAAGCCTTCCCACTATAGGAGCTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS GCA 72 bp | GATATAGTAGGAAATGACGATGATGATTGTGGTGACTaGATCGACTGTGGCGACTCTGATGCTGATGTTGAT | + |
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Preference number: 6 (lower is better) Translates to: DIVGNDDDDCGD*IDCGDSDADVD Trigger: ATCAACATCAGCATCAGAGTCGCCACAGTCGATGCAGTCACCACAATCATCATCGTCATTTCCTACTATATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS TCA 72 bp | GCAACCCTCTATATTCTTCTCTGTCTCCATTCGATCTaGAAGCGCGATTTTCTTTGGCCTATAGTGTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: ATLYILLCLHSI*KRDFLWPIVFF Trigger: AAAGAACACTATAGGCCAAAGAAAATCGCGCTTTCAGATCGAATGGAGACAGAGAAGAATATAGAGGGTTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CCA 72 bp | TTTTTGACTTCTTGGAGATTTTTGGAAGCCTTTGCTTaGATCCGGTCAAGCTCCTTGTCAATTAGTTCCTGT | + |
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Preference number: 6 (lower is better) Translates to: FLTSWRFLEAFA*IRSSSLSISSC Trigger: ACAGGAACTAATTGACAAGGAGCTTGACCGGATCCAAGCAAAGGCTTCCAAAAATCTCCAAGAAGTCAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 90 bp | GACTGTGGCGACTCTGATGCTGATGTTGATCCTCCATATTCCTCCTaGAGTTTTGCCTCAACACGTTGTTTATGTAGAAAATTCTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: DCGDSDADVDPPYSS*SFASTRCLCRKFSN Trigger: ATTTGAGAATTTTCTACATAAACAACGTGTTGAGGCAAAACTCAAGGAGGAATATGGAGGATCAACATCAGCATCAGAGTCGCCACAGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 90 bp | CTATATTCTTCTCTGTCTCCATTCGATCTGAAAGCGCGATTTTCTTaGGCCTATAGTGTTCTTTTACAAATGCTTTGTAGCGTTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: LYSSLSPFDLKARFS*AYSVLLQMLCSVPG Trigger: ACCTGGAACGCTACAAAGCATTTGTAAAAGAACACTATAGGCCAAAGAAAATCGCGCTTTCAGATCGAATGGAGACAGAGAAGAATATAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 72 bp | TCTCTGTCTCCATTCGATCTGAAAGCGCGATTTTCTTaGGCCTATAGTGTTCTTTTACAAATGCTTTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: SLSPFDLKARFS*AYSVLLQMLCS Trigger: GCTACAAAGCATTTGTAAAAGAACACTATAGGCCAAAGAAAATCGCGCTTTCAGATCGAATGGAGACAGAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 90 bp | AACCAAAGAAAAATCGTGTTTCCTAGGTCTTCTTTGAATTTATCATaGAAGAGGCTGCAGGATTCTGGAAATGATTCCTGGAAGGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: NQRKIVFPRSSLNLS*KRLQDSGNDSWKVV Trigger: CACAACCTTCCAGGAATCATTTCCAGAATCCTGCAGCCTCTTCAATGATAAATTCAAAGAAGACCTAGGAAACACGATTTTTCTTTGGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS TCA 72 bp | ACTCTGATGCTGATGTTGATCCTCCATATTCCTCCTTaGGTTTTGCCTCAACACGTTGTTTATGTAGAAAAT | + |
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Preference number: 6 (lower is better) Translates to: TLMLMLILHIPP*VLPQHVVYVEN Trigger: ATTTTCTACATAAACAACGTGTTGAGGCAAAACTCAAGGAGGAATATGGAGGATCAACATCAGCATCAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 72 bp | AAAATCGTGTTTCCTAGGTCTTCTTTGAATTTATCATaGAAGAGGCTGCAGGATTCTGGAAATGATTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: KIVFPRSSLNLS*KRLQDSGNDSW Trigger: CCAGGAATCATTTCCAGAATCCTGCAGCCTCTTCAATGATAAATTCAAAGAAGACCTAGGAAACACGATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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| CDS CAA 72 bp | TCTGCAATTCTATCAAACAAGAAATCTTCATCTCTTTaGTCAGGCTTGAATTTATGTAGAAACCACCACCAA | + |
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Preference number: 6 (lower is better) Translates to: SAILSNKKSSSL*SGLNLCRNHHQ Trigger: TTGGTGGTGGTTTCTACATAAATTCAAGCCTGACAAAAGAGATGAAGATTTCTTGTTTGATAGAATTGCAGA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000110446.9 ENSMUST00000110448.3 ENSMUST00000178118.8 |
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