Pregenerated sensors for FAM219B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032305Ensembl transcript IDs: ENSMUST00000093833.6, ENSMUST00000114200.10
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGAGGGGCAGTGTAAACAAACGTGGGGGAGGCACAGGCACTCCTaGGGAGGCTCAGACGCCCTCCTTCCCAGGGACAGCCTCCCGCAG | + |
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Preference number: 1 (lower is better) Translates to: TEGQCKQTWGRHRHS*GGSDALLPRDSLPQ Trigger: CTGCGGGAGGCTGTCCCTGGGAAGGAGGGCGTCTGAGCCTCCTCAGGAGTGCCTGTGCCTCCCCCACGTTTGTTTACACTGCCCCTCAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 90 bp | CACTGTGAAGGGCCATTGGGGCCATCGGCCCATCCTGGAGGGCTATaGCTACTGGAGGGTACAGGAAGAATCCCCAAGGCAGCACCAGCA | + |
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Preference number: 1 (lower is better) Translates to: HCEGPLGPSAHPGGL*LLEGTGRIPKAAPA Trigger: TGCTGGTGCTGCCTTGGGGATTCTTCCTGTACCCTCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR CCA 90 bp | AAGGGCCATTGGGGCCATCGGCCCATCCTGGAGGGCTATGGCTACTaGAGGGTACAGGAAGAATCCCCAAGGCAGCACCAGCAGCAAGAA | + |
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Preference number: 1 (lower is better) Translates to: KGHWGHRPILEGYGY*RVQEESPRQHQQQE Trigger: TTCTTGCTGCTGGTGCTGCCTTGGGGATTCTTCCTGTACCCTCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR CCA 90 bp | CTGGCGGTGATACCCAGTGCACTGAGTATCACTGTGAAGGGCCATTaGGGCCATCGGCCCATCCTGGAGGGCTATGGCTACTGGAGGGTA | + |
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Preference number: 1 (lower is better) Translates to: LAVIPSALSITVKGH*GHRPILEGYGYWRV Trigger: TACCCTCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTGATACTCAGTGCACTGGGTATCACCGCCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR CCA 90 bp | CCTTCCAGGGACAGTTCTAGCCAAGTACAACTACCCCAGAGAGTGTaGTTTCTTGGGCACTGCCCACCCCCAGGAGCTGCCAAATGTCCA | + |
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Preference number: 1 (lower is better) Translates to: PSRDSSSQVQLPQRV*FLGHCPPPGAAKCP Trigger: TGGACATTTGGCAGCTCCTGGGGGTGGGCAGTGCCCAAGAAACCACACTCTCTGGGGTAGTTGTACTTGGCTAGAACTGTCCCTGGAAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 90 bp | AAGTGCTGCTCTCTGCCTCTCACCATACCCCCAGCACAGCCTGAGTaGAGGAGTTCGTTCTTTCTTCTCCCTCCTCAGGAGGAGTCAGAA | + |
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Preference number: 1 (lower is better) Translates to: KCCSLPLTIPPAQPE*RSSFFLLPPQEESE Trigger: TTCTGACTCCTCCTGAGGAGGGAGAAGAAAGAACGAACTCCTTCACTCAGGCTGTGCTGGGGGTATGGTGAGAGGCAGAGAGCAGCACTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 90 bp | CATAAAGTGCTGCTCTCTGCCTCTCACCATACCCCCAGCACAGCCTaGGTGAAGGAGTTCGTTCTTTCTTCTCCCTCCTCAGGAGGAGTC | + |
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Preference number: 1 (lower is better) Translates to: HKVLLSASHHTPSTA*VKEFVLSSPSSGGV Trigger: GACTCCTCCTGAGGAGGGAGAAGAAAGAACGAACTCCTTCACTCAGGCTGTGCTGGGGGTATGGTGAGAGGCAGAGAGCAGCACTTTATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 90 bp | CAAGTGCTCTACCAGCCTGTGAGCCCTGTGCTGGGGAGAGAAATGTaGCTTGTTAGAGGGAAGGCCTCCTTGCACTGCAGATTCATCAAC | + |
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Preference number: 1 (lower is better) Translates to: QVLYQPVSPVLGREM*LVRGKASLHCRFIN Trigger: GTTGATGAATCTGCAGTGCAAGGAGGCCTTCCCTCTAACAAGGCACATTTCTCTCCCCAGCACAGGGCTCACAGGCTGGTAGAGCACTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 90 bp | CCTCCCGCAGAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTaGGCACCTCTGTGCCTTTATTGGTGTTATTTTTGTCTGTCCCCT | + |
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Preference number: 1 (lower is better) Translates to: PPAEHPALGIKAVRV*APLCLYWCYFCLSP Trigger: AGGGGACAGACAAAAATAACACCAATAAAGGCACAGAGGTGCTCACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 90 bp | ACCAAGTCTTTCTCTACTCTGTACTATCTCTGTTCCCTCTGCACATaGGGACTCCACCTCTGCAGAGCCCTAGAAGCCTGGATATGGTCT | + |
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Preference number: 1 (lower is better) Translates to: TKSFSTLYYLCSLCT*GLHLCRALEAWIWS Trigger: AGACCATATCCAGGCTTCTAGGGCTCTGCAGAGGTGGAGTCCTCATGTGCAGAGGGAACAGAGATAGTACAGAGTAGAGAAAGACTTGGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR GCA 90 bp | CGTGGGGGAGGCACAGGCACTCCTGAGGAGGCTCAGACGCCCTCCTTCCCAGGGCTGCAAGCCATAAAGTaGTGCTCTCTGCCTCTCACC | + |
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Preference number: 2 (lower is better) Translates to: RGGGTGTPEEAQTPSFPGLQAIK*CSLPLT Trigger: GGTGAGAGGCAGAGAGCAGCACTTTATGGCTTGCAG...CCCTGGGAAGGAGGGCGTCTGAGCCTCCTCAGGAGTGCCTGTGCCTCCCCCACG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 90 bp | GCTGGCGGTGATACCCAGTGCACTGAGTATCACTGTGAAGGGCCATaGGGGCCATCGGCCCATCCTGGAGGGCTATGGCTACTGGAGGGT | + |
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Preference number: 2 (lower is better) Translates to: AGGDTQCTEYHCEGP*GPSAHPGGLWLLEG Trigger: ACCCTCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTGATACTCAGTGCACTGGGTATCACCGCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR-3UTR GCA 90 bp | AGGGGCAGTGTAAACAAACGTGGGGGAGGCACAGGCACTCCTGAGGAGGCTCAGCCCACCCCCAGGAGCTaGCAAATGTCCAGGCTACTC | + |
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Preference number: 2 (lower is better) Translates to: RGSVNKRGGGTGTPEEAQPTPRS*QMSRLL Trigger: GAGTAGCCTGGACATTTGGCAGCTCCTGGGGGTGGG...CTGAGCCTCCTCAGGAGTGCCTGTGCCTCCCCCACGTTTGTTTACACTGCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR CCA 90 bp | AGGGGCAGTGTAAACAAACGTGGGGGAGGCACAGGCACTCCTGAGGAGGCTCAGGCCATCGGCCCATCCTaGAGGGCTATGGCTACTGGA | + |
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Preference number: 2 (lower is better) Translates to: RGSVNKRGGGTGTPEEAQAIGPS*RAMATG Trigger: TCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGC...CTGAGCCTCCTCAGGAGTGCCTGTGCCTCCCCCACGTTTGTTTACACTGCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR CAA 90 bp | GACGCCCTCCTTCCCAGGGACAGCCTCCCGCAGAACACCCAGCCCTaGGAATTAAGGCAGTTAGGGTGTGAGCACCTCTGTGCCTTTATT | + |
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Preference number: 2 (lower is better) Translates to: DALLPRDSLPQNTQP*ELRQLGCEHLCAFI Trigger: AATAAAGGCACAGAGGTGCTCACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGGCTGTCCCTGGGAAGGAGGGCGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GCTTACACAGCTAAACATAGGAAGGCACTAACTTCCCAGCAGCTCCCTCTGCTGCGGGGGCCTCTGACATaGGAAGCACCAGGTGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: AYTAKHRKALTSQQLPLLRGPLT*EAPGEG Trigger: GCCCTCACCTGGTGCTTCTCATGTCAGAGGCCCCCG...CAGCAGAGGGAGCTGCTGGGAAGTTAGTGCCTTCCTATGTTTAGCTGTGTAAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 90 bp | GGGACAGTTCTAGCCAAGTACAACTACCCCAGAGAGTGTGGTTTCTaGGGCACTGCCCACCCCCAGGAGCTGCCAAATGTCCAGGCTACT | + |
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Preference number: 2 (lower is better) Translates to: GTVLAKYNYPRECGF*GTAHPQELPNVQAT Trigger: AGTAGCCTGGACATTTGGCAGCTCCTGGGGGTGGGCAGTGCCCAAGAAACCACACTCTCTGGGGTAGTTGTACTTGGCTAGAACTGTCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GACAGCCTCCCGCAGAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTGAGCAAGTTCAGAGGTTCTaGAAGCCACAGGCCCACTCC | + |
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Preference number: 2 (lower is better) Translates to: DSLPQNTQPLELRQLGCEQVQRF*KPQAHS Trigger: GGAGTGGGCCTGTGGCTTTCAGAACCTCTGAACTTG...CTCACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGGCTGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | CCCTTATGCTGGGAACCGTATCTACCCCAAGCCTCACCACACACCTGGGTAAGAACCCCCAGCACAGCCTaGGTGAAGGAGTTCGTTCTT | + |
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Preference number: 2 (lower is better) Translates to: PLCWEPYLPQASPHTWVRTPSTA*VKEFVL Trigger: AAGAACGAACTCCTTCACTCAGGCTGTGCTGGGGGT...TCTTACCCAGGTGTGTGGTGAGGCTTGGGGTAGATACGGTTCCCAGCATAAGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | TGCAAGGCAAGAAAGAGGACTGAGGGGCAGTGTAAACAAACGTGGGGGAGGCACCCCAGGCAGCATCTATaGCCCAACCCAAGAACCAAG | + |
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Preference number: 2 (lower is better) Translates to: CKARKRTEGQCKQTWGRHPRQHL*PNPRTK Trigger: CTTGGTTCTTGGGTTGGGTCATAGATGCTGCCTGGG...GTGCCTCCCCCACGTTTGTTTACACTGCCCCTCAGTCCTCTTTCTTGCCTTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR GCA 90 bp | GCACAGGCTAGGCAAGTGCTCTACCAGCCTGTGAGCCCTGTGCTGGGGAGAGAACAAGCCATAAAGTGCTaGTCTCTGCCTCTCACCATA | + |
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Preference number: 2 (lower is better) Translates to: AQARQVLYQPVSPVLGREQAIKC*SLPLTI Trigger: TATGGTGAGAGGCAGAGAGCAGCACTTTATGGCTTG...TTCTCTCCCCAGCACAGGGCTCACAGGCTGGTAGAGCACTTGCCTAGCCTGTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR GCA 90 bp | AGGGACAGCCTCCCGCAGAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTCTGGGGAGAGAAATGTaGCTTGTTAGAGGGAAGGCC | + |
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Preference number: 2 (lower is better) Translates to: RDSLPQNTQPLELRQLGCLGREM*LVRGKA Trigger: GGCCTTCCCTCTAACAAGGCACATTTCTCTCCCCAG...ACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGGCTGTCCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GATATGGTCTGTGTTCCTTCCCTGCAGGCCATACATAAAGTGCTCAGAATGAGACGGGGGCCTCTGACATaGGAAGCACCAGGTGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: DMVCVPSLQAIHKVLRMRRGPLT*EAPGEG Trigger: GCCCTCACCTGGTGCTTCTCATGTCAGAGGCCCCCG...TCTCATTCTGAGCACTTTATGTATGGCCTGCAGGGAAGGAACACAGACCATATC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR CCA 90 bp | TGCAAGGCAAGAAAGAGGACTGAGGGGCAGTGTAAACAAACGTGGGGGAGGCACGAGGGCTATGGCTACTaGAGGGTACAGGAAGAATCC | + |
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Preference number: 2 (lower is better) Translates to: CKARKRTEGQCKQTWGRHEGYGY*RVQEES Trigger: GGATTCTTCCTGTACCCTCCAGTAGCCATAGCCCTC...GTGCCTCCCCCACGTTTGTTTACACTGCCCCTCAGTCCTCTTTCTTGCCTTGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR-3UTR TCA 90 bp | CCACCAAGTCTTTCTCTACTCTGTACTATCTCTGTTCCCTCTGCACATGAGGACTCCACCTATCACCTATaGCCCAGACGGGGGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PPSLSLLCTISVPSAHEDSTYHL*PRRGPL Trigger: CAGAGGCCCCCGTCTGGGTCATAGGTGATAGGTGGA...GTCCTCATGTGCAGAGGGAACAGAGATAGTACAGAGTAGAGAAAGACTTGGTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GACACTACTGAGCTTTTTCCACAAGTAATGCTTTTCCACACGAGGCCACCTAGCTCCACCTATCACCTATaGCCCAGACGGGGGCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: DTTELFPQVMLFHTRPPSSTYHL*PRRGPL Trigger: CAGAGGCCCCCGTCTGGGTCATAGGTGATAGGTGGA...GCTAGGTGGCCTCGTGTGGAAAAGCATTACTTGTGGAAAAAGCTCAGTAGTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GCAGCATCTATGACCCAACCCAAGAACCAAGTAGATGTGCCTCTGGCTTCTGTCCAAGTTCAGAGGTTCTaGAAGCCACAGGCCCACTCC | + |
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Preference number: 2 (lower is better) Translates to: AASMTQPKNQVDVPLASVQVQRF*KPQAHS Trigger: GGAGTGGGCCTGTGGCTTTCAGAACCTCTGAACTTG...GACAGAAGCCAGAGGCACATCTACTTGGTTCTTGGGTTGGGTCATAGATGCTGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR CCA 90 bp | AGGGACAGCCTCCCGCAGAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTCCTCCCTTATTAAAGTaGCTTCCTGAAACTGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: RDSLPQNTQPLELRQLGCPPLLK*LPETAP Trigger: TGGGGCAGTTTCAGGAAGCCACTTTAATAAGGGAGG...ACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGGCTGTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | ACAGTTCTAGCCAAGTACAACTACCCCAGAGAGTGTGGTTTCTTGGGCACTGCCGGAATCTCATCCAGGTaGTATCCATCCTGCAGCAGC | + |
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Preference number: 2 (lower is better) Translates to: TVLAKYNYPRECGFLGTAGISSR*YPSCSS Trigger: GCTGCTGCAGGATGGATATCACCTGGATGAGATTCC...GGCAGTGCCCAAGAAACCACACTCTCTGGGGTAGTTGTACTTGGCTAGAACTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR-3UTR TCA 90 bp | AGGGACAGCCTCCCGCAGAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTCACTGGCAACAATCATaGGAACAGATTTGTGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: RDSLPQNTQPLELRQLGCHWQQS*EQICGQ Trigger: TTGGCCACAAATCTGTTCTCATGATTGTTGCCAGTG...ACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTCTGCGGGAGGCTGTCCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGTTAGGGTGTGAGCACCTCTGTGCCTTTATTGGTGTTATTTTTGTCTGTGAGGCCAGGCAGTGGTaGCGCACGCCTTTAATCCCA | + |
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Preference number: 2 (lower is better) Translates to: RQLGCEHLCAFIGVIFVCEARQW*RTPLIP Trigger: TGGGATTAAAGGCGTGCGCCACCACTGCCTGGCCTC...ACAGACAAAAATAACACCAATAAAGGCACAGAGGTGCTCACACCCTAACTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 90 bp | TGTAACCTAAGGAACAACCCACTTGGCGCTTCCCAGCTGTATTCTTaGAGATTCCTCCTGCAAGCCATAAAGTGCTGCTCTCTGCCTCTC | + |
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Preference number: 2 (lower is better) Translates to: CNLRNNPLGASQLYS*RFLLQAIKCCSLPL Trigger: GAGAGGCAGAGAGCAGCACTTTATGGCTTGCAGGAGGAATCTCAAAGAATACAGCTGGGAAGCGCCAAGTGGGTTGTTCCTTAGGTTACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GATATGGTCTGTGTTCCTTCCCTGCAGGCCATACATAAAGTGCTCAGAATGAGACCCAGGCAGCATCTATaGCCCAACCCAAGAACCAAG | + |
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Preference number: 2 (lower is better) Translates to: DMVCVPSLQAIHKVLRMRPRQHL*PNPRTK Trigger: CTTGGTTCTTGGGTTGGGTCATAGATGCTGCCTGGG...TCTCATTCTGAGCACTTTATGTATGGCCTGCAGGGAAGGAACACAGACCATATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | AGGCAGTTAGGGTGTGAGCACCTCTGTGCCTTTATTGGTGTTATTTTTGTCTGTCCCTTGTGGCCTCACTaGGCCCTACCACCAAGTCTT | + |
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Preference number: 2 (lower is better) Translates to: RQLGCEHLCAFIGVIFVCPLWPH*ALPPSL Trigger: AAGACTTGGTGGTAGGGCTCAGTGAGGCCACAAGGG...ACAGACAAAAATAACACCAATAAAGGCACAGAGGTGCTCACACCCTAACTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR TCA 90 bp | GACACTACTGAGCTTTTTCCACAAGTAATGCTTTTCCACACGAGGCCACCTAGCCACTGGCAACAATCATaGGAACAGATTTGTGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: DTTELFPQVMLFHTRPPSHWQQS*EQICGQ Trigger: TTGGCCACAAATCTGTTCTCATGATTGTTGCCAGTG...GCTAGGTGGCCTCGTGTGGAAAAGCATTACTTGTGGAAAAAGCTCAGTAGTGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR GCA 90 bp | CCTCTGCTGGTAATAACAAAAACTGCAGATTCCTGCCAATCCAATTTTTACCTCCTGCAAGCCATAAAGTaGTGCTCTCTGCCTCTCACC | + |
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Preference number: 2 (lower is better) Translates to: PLLVITKTADSCQSNFYLLQAIK*CSLPLT Trigger: GGTGAGAGGCAGAGAGCAGCACTTTATGGCTTGCAG...GAGGTAAAAATTGGATTGGCAGGAATCTGCAGTTTTTGTTATTACCAGCAGAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR GCA 90 bp | TGCCTTTATTGGTGTTATTTTTGTCTGTCCCCTAACAGCTGCCCATTTCTATCCGGTAATAACAAAAACTaGAGATTCCTGCCAATCCAA | + |
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Preference number: 2 (lower is better) Translates to: CLYWCYFCLSPNSCPFLSGNNKN*RFLPIQ Trigger: TTGGATTGGCAGGAATCTGCAGTTTTTGTTATTACC...GGATAGAAATGGGCAGCTGTTAGGGGACAGACAAAAATAACACCAATAAAGGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 72 bp | CAGTGTAAACAAACGTGGGGGAGGCACAGGCACTCCTaGGGAGGCTCAGACGCCCTCCTTCCCAGGGACAGC | + |
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Preference number: 3 (lower is better) Translates to: QCKQTWGRHRHS*GGSDALLPRDS Trigger: GCTGTCCCTGGGAAGGAGGGCGTCTGAGCCTCCTCAGGAGTGCCTGTGCCTCCCCCACGTTTGTTTACACTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | GGGCCATTGGGGCCATCGGCCCATCCTGGAGGGCTATaGCTACTGGAGGGTACAGGAAGAATCCCCAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: GPLGPSAHPGGL*LLEGTGRIPKA Trigger: TGCCTTGGGGATTCTTCCTGTACCCTCCAGTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR TCA 72 bp | CTTCCACCTATCACCTATGACCCAGACGGGGGCCTCTaGCATGAGAAGCACCAGGTGAGGGCTCCTGTAGGC | + |
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Preference number: 3 (lower is better) Translates to: LPPITYDPDGGL*HEKHQVRAPVG Trigger: GCCTACAGGAGCCCTCACCTGGTGCTTCTCATGTCAGAGGCCCCCGTCTGGGTCATAGGTGATAGGTGGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 72 bp | GTACAACTACCCCAGAGAGTGTGGTTTCTTGGGCACTaGCCACCCCCAGGAGCTGCCAAATGTCCAGGCTAC | + |
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Preference number: 3 (lower is better) Translates to: VQLPQRVWFLGH*PPPGAAKCPGY Trigger: GTAGCCTGGACATTTGGCAGCTCCTGGGGGTGGGCAGTGCCCAAGAAACCACACTCTCTGGGGTAGTTGTAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | ATACCCAGTGCACTGAGTATCACTGTGAAGGGCCATTaGGGCCATCGGCCCATCCTGGAGGGCTATGGCTAC | + |
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Preference number: 3 (lower is better) Translates to: IPSALSITVKGH*GHRPILEGYGY Trigger: GTAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTGATACTCAGTGCACTGGGTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| 3UTR TCA 72 bp | GCCTTGCACAGGCTAGGCAAGTGCTCTACCAGCCTGTaGGCCCTGTGCTGGGGAGAGAAATGTGCCTTGTTA | + |
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Preference number: 3 (lower is better) Translates to: ALHRLGKCSTSL*ALCWGEKCALL Trigger: TAACAAGGCACATTTCTCTCCCCAGCACAGGGCTCACAGGCTGGTAGAGCACTTGCCTAGCCTGTGCAAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 72 bp | TTAAAGTGGCTTCCTGAAACTGCCCCAGTGGGAACCTaGCGACTTCCACCTATCACCTATGACCCAGACGGG | + |
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Preference number: 3 (lower is better) Translates to: LKWLPETAPVGT*RLPPITYDPDG Trigger: CCCGTCTGGGTCATAGGTGATAGGTGGAAGTCGGCAGGTTCCCACTGGGGCAGTTTCAGGAAGCCACTTTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | GTTACTAAGCCCATCCAGACAGCAGGGCCAGCAGAATaGTCCAAGTTCAGAGGTTCTGAAAGCCACAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: VTKPIQTAGPAE*SKFRGSESHRP Trigger: GGGCCTGTGGCTTTCAGAACCTCTGAACTTGGACCATTCTGCTGGCCCTGCTGTCTGGATGGGCTTAGTAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | GAAGGCCTCCTTGCACTGCAGATTCATCAACTCAAGTaGGGTCCAGGAGCTGGCTTAAGTCTCCCCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: EGLLALQIHQLK*GPGAGLSLPFP Trigger: TGGGAAGGGGAGACTTAAGCCAGCTCCTGGACCCCACTTGAGTTGATGAATCTGCAGTGCAAGGAGGCCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | GGACTCCACCTCTGCAGAGCCCTAGAAGCCTGGATATaGTCTGTGTTCCTTCCCTGCAGGCCATACATAAAG | + |
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Preference number: 3 (lower is better) Translates to: GLHLCRALEAWI*SVFLPCRPYIK Trigger: CTTTATGTATGGCCTGCAGGGAAGGAACACAGACCATATCCAGGCTTCTAGGGCTCTGCAGAGGTGGAGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 72 bp | TCAGGAAGTTTCTCCTCCCTTATTAAAGTGGCTTCCTaGAACTGCCCCAGTGGGAACCTGCCGACTTCCACC | + |
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Preference number: 3 (lower is better) Translates to: SGSFSSLIKVAS*NCPSGNLPTST Trigger: GGTGGAAGTCGGCAGGTTCCCACTGGGGCAGTTTCAGGAAGCCACTTTAATAAGGGAGGAGAAACTTCCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 72 bp | GGAGAGAAATGTGCCTTGTTAGAGGGAAGGCCTCCTTaGACTGCAGATTCATCAACTCAAGTGGGGTCCAGG | + |
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Preference number: 3 (lower is better) Translates to: GEKCALLEGRPP*TADSSTQVGSR Trigger: CCTGGACCCCACTTGAGTTGATGAATCTGCAGTGCAAGGAGGCCTTCCCTCTAACAAGGCACATTTCTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 72 bp | AGTGTGGTTTCTTGGGCACTGCCCACCCCCAGGAGCTaGCAAATGTCCAGGCTACTCTGTTTTAACCAAACA | + |
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Preference number: 3 (lower is better) Translates to: SVVSWALPTPRS*QMSRLLCFNQT Trigger: TGTTTGGTTAAAACAGAGTAGCCTGGACATTTGGCAGCTCCTGGGGGTGGGCAGTGCCCAAGAAACCACACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR-3UTR CAA 90 bp | CCACCAAGTCTTTCTCTACTCTGTACTATCTCTGTTCCCTCTGCACATGAGGACAGAGGGAAGGCCTCCTaGCACTGCAGATTCATCAAC | + |
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Preference number: 3 (lower is better) Translates to: PPSLSLLCTISVPSAHEDRGKAS*HCRFIN Trigger: GTTGATGAATCTGCAGTGCAAGGAGGCCTTCCCTCT...GTCCTCATGTGCAGAGGGAACAGAGATAGTACAGAGTAGAGAAAGACTTGGTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 72 bp | TCCACACTTAAGTTCCACAAGCCCTTGTGGCCTCACTaGGCCCTACCACCAAGTCTTTCTCTACTCTGTACT | + |
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Preference number: 3 (lower is better) Translates to: STLKFHKPLWPH*ALPPSLSLLCT Trigger: AGTACAGAGTAGAGAAAGACTTGGTGGTAGGGCTCAGTGAGGCCACAAGGGCTTGTGGAACTTAAGTGTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CCA 72 bp | ACTGCAGATTCATCAACTCAAGTGGGGTCCAGGAGCTaGCTTAAGTCTCCCCTTCCCATCCTGTCTAAACAT | + |
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Preference number: 3 (lower is better) Translates to: TADSSTQVGSRS*LKSPLPILSKH Trigger: ATGTTTAGACAGGATGGGAAGGGGAGACTTAAGCCAGCTCCTGGACCCCACTTGAGTTGATGAATCTGCAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR TCA 72 bp | GAACACCCAGCCCTTGGAATTAAGGCAGTTAGGGTGTaGGCACCTCTGTGCCTTTATTGGTGTTATTTTTGT | + |
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Preference number: 3 (lower is better) Translates to: EHPALGIKAVRV*APLCLYWCYFC Trigger: ACAAAAATAACACCAATAAAGGCACAGAGGTGCTCACACCCTAACTGCCTTAATTCCAAGGGCTGGGTGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR GCA 72 bp | TTCCCAGCAGCTCCCTCTGCTGGTAATAACAAAAACTaGAGATTCCTGCCAATCCAATTTTTACCTCAAAAA | + |
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Preference number: 3 (lower is better) Translates to: FPAAPSAGNNKN*RFLPIQFLPQK Trigger: TTTTTGAGGTAAAAATTGGATTGGCAGGAATCTGCAGTTTTTGTTATTACCAGCAGAGGGAGCTGCTGGGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 72 bp | GATACCCAGTGCACTGAGTATCACTGTGAAGGGCCATaGGGGCCATCGGCCCATCCTGGAGGGCTATGGCTA | + |
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Preference number: 4 (lower is better) Translates to: DTQCTEYHCEGP*GPSAHPGGLWL Trigger: TAGCCATAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTGATACTCAGTGCACTGGGTATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093833.6 |
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| CDS-3UTR CCA 90 bp | CTGTCTAAACATTTCCATGTAGGCCAGAGTCACACAGCTACACCAGGACACCTCAGAACGGCCTTGGCATaGTCCCGGTGCTTCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LSKHFHVGQSHTATPGHLRTALA*SRCFFS Trigger: GCTGAAGAAGCACCGGGACCATGCCAAGGCCGTTCT...GAGGTGTCCTGGTGTAGCTGTGTGACTCTGGCCTACATGGAAATGTTTAGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 72 bp | GGGAGAGAAATGTGCCTTGTTAGAGGGAAGGCCTCCTaGCACTGCAGATTCATCAACTCAAGTGGGGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: GREMCLVRGKAS*HCRFINSSGVQ Trigger: CTGGACCCCACTTGAGTTGATGAATCTGCAGTGCAAGGAGGCCTTCCCTCTAACAAGGCACATTTCTCTCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| 3UTR CAA 72 bp | AGGAACAACCCACTTGGCGCTTCCCAGCTGTATTCTTaGAGATTCCTCCTGCAAGCCATAAAGTGCTGCTCT | + |
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Preference number: 4 (lower is better) Translates to: RNNPLGASQLYS*RFLLQAIKCCS Trigger: AGAGCAGCACTTTATGGCTTGCAGGAGGAATCTCAAAGAATACAGCTGGGAAGCGCCAAGTGGGTTGTTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR CCA 90 bp | TGCCTTTATTGGTGTTATTTTTGTCTGTCCCCTAACAGCTGCCCATTTCTATCCAGAACGGCCTTGGCATaGTCCCGGTGCTTCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CLYWCYFCLSPNSCPFLSRTALA*SRCFFS Trigger: GCTGAAGAAGCACCGGGACCATGCCAAGGCCGTTCT...GGATAGAAATGGGCAGCTGTTAGGGGACAGACAAAAATAACACCAATAAAGGCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR CCA 90 bp | AAGTCTCCCCTTCCCATCCTGTCTAAACATTTCCATGTAGGCCAGAGTCACACACACCAGGTTTTCATCTaGACTCTGGCTAAGAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: KSPLPILSKHFHVGQSHTHQVFI*TLAKSS Trigger: ACTGCTCTTAGCCAGAGTCCAGATGAAAACCTGGTG...TGTGTGACTCTGGCCTACATGGAAATGTTTAGACAGGATGGGAAGGGGAGACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR CCA 90 bp | TTAGCAATCAGCATAAGAACCTCAGGAAGTTTCTCCTCCCTTATTAAAGTGGCTTGCCGGCTCACATCCTaGTTCACCTGCTCTGCAGAG | + |
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Preference number: 4 (lower is better) Translates to: LAISIRTSGSFSSLIKVACRLTS*FTCSAE Trigger: CTCTGCAGAGCAGGTGAACCAGGATGTGAGCCGGCA...AGCCACTTTAATAAGGGAGGAGAAACTTCCTGAGGTTCTTATGCTGATTGCTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114200.10 |
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| CDS-3UTR CCA 90 bp | AGGCAGTTAGGGTGTGAGCACCTCTGTGCCTTTATTGGTGTTATTTTTGTCTGTCACCAGGTTTTCATCTaGACTCTGGCTAAGAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: RQLGCEHLCAFIGVIFVCHQVFI*TLAKSS Trigger: ACTGCTCTTAGCCAGAGTCCAGATGAAAACCTGGTG...ACAGACAAAAATAACACCAATAAAGGCACAGAGGTGCTCACACCCTAACTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR TCA 90 bp | GCAACAATCATGAGAACAGATTTGTGGCCAAGTAATAGGGAAAGCCTTATCTTTGGAATCTCATCCAGGTaGTATCCATCCTGCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: ATIMRTDLWPSNRESLIFGISSR*YPSCSS Trigger: GCTGCTGCAGGATGGATATCACCTGGATGAGATTCC...AAAGATAAGGCTTTCCCTATTACTTGGCCACAAATCTGTTCTCATGATTGTTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114200.10 |
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| CDS GCA 90 bp | GAGGCCCGCGCCGCCGCTCTGTCCGGAGGGCAGCCCCGCAGTTCCTaGCACGCTGTCGGGAGCCGCGCCAGGCTGAGACCCCTGGGTGGA | + |
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Preference number: 5 (lower is better) Translates to: EARAAALSGGQPRSS*HAVGSRARLRPLGG Trigger: TCCACCCAGGGGTCTCAGCCTGGCGCGGCTCCCGACAGCGTGGCAGGAACTGCGGGGCTGCCCTCCGGACAGAGCGGCGGCGCGGGCCTC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR CAA 90 bp | ACTGAGTATCACTGTGAAGGGCCATTGGGGCCATCGGCCCATCCTGGAGGGCTACTCCGCAGAACGGCCTaGGCATGGTCCCGGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: TEYHCEGPLGPSAHPGGLLRRTA*AWSRCF Trigger: GAAGCACCGGGACCATGCCAAGGCCGTTCTGCGGAG...TAGCCCTCCAGGATGGGCCGATGGCCCCAATGGCCCTTCACAGTGATACTCAGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS GCA 90 bp | ACCTTTTCCCTGAAGAATCGGGTCGGTTCGTCAAGGCACCCAGCATaGCCTTTCTCCGCAGAACGGCCTTGGCATGGTCCCGGTGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: TFSLKNRVGSSRHPA*PFSAERPWHGPGAS Trigger: AGAAGCACCGGGACCATGCCAAGGCCGTTCTGCGGAGAAAGGGCATGCTGGGTGCCTTGACGAACCGACCCGATTCTTCAGGGAAAAGGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS-3UTR CAA 90 bp | CATCAATACTTCTCAAAAGCTTACACAGCTAAACATAGGAAGGCACTAACTTCCCTCCGCAGAACGGCCTaGGCATGGTCCCGGTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: HQYFSKAYTAKHRKALTSLRRTA*AWSRCF Trigger: GAAGCACCGGGACCATGCCAAGGCCGTTCTGCGGAG...GGAAGTTAGTGCCTTCCTATGTTTAGCTGTGTAAGCTTTTGAGAAGTATTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS CCA 72 bp | CGCTGTCGGGAGCCGCGCCAGGCTGAGACCCCTGGGTaGACATCCGCACCGCATGCCCGCGGAACTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: RCREPRQAETPG*TSAPHARGTPR Trigger: CCGAGGAGTTCCGCGGGCATGCGGTGCGGATGTCCACCCAGGGGTCTCAGCCTGGCGCGGCTCCCGACAGCG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS TCA 72 bp | GCAGTTCCTGCCACGCTGTCGGGAGCCGCGCCAGGCTaGGACCCCTGGGTGGACATCCGCACCGCATGCCCG | + |
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Preference number: 6 (lower is better) Translates to: AVPATLSGAAPG*DPWVDIRTACP Trigger: CGGGCATGCGGTGCGGATGTCCACCCAGGGGTCTCAGCCTGGCGCGGCTCCCGACAGCGTGGCAGGAACTGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS GCA 72 bp | CTGAAGAATCGGGTCGGTTCGTCAAGGCACCCAGCATaGCCTTTCTCCGCAGAACGGCCTTGGCATGGTCCC | + |
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Preference number: 6 (lower is better) Translates to: LKNRVGSSRHPA*PFSAERPWHGP Trigger: GGGACCATGCCAAGGCCGTTCTGCGGAGAAAGGGCATGCTGGGTGCCTTGACGAACCGACCCGATTCTTCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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| CDS GCA 72 bp | GTCCCGGTGCTTCTTCAGCTTAGCCTGAATGGAAGGTaGGCGTGTCACCAAGTAGGGTCCCCGCTTCTCCAT | + |
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Preference number: 6 (lower is better) Translates to: VPVLLQLSLNGR*ACHQVGSPLLH Trigger: ATGGAGAAGCGGGGACCCTACTTGGTGACACGCGCACCTTCCATTCAGGCTAAGCTGAAGAAGCACCGGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000093833.6 ENSMUST00000114200.10 |
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