RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM219A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028439

Ensembl transcript IDs: ENSMUST00000108049.9, ENSMUST00000108050.2, ENSMUST00000108052.10

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTGGCCGCACTaGCTCAGTGAGAGGAGGCTCGTGGGTCCGAGGCCCAGCAGCCTG +
Preference number: 1 (lower is better)
Translates to: MLACGAPEGETLWPH*LSERRLVGPRPSSL
Trigger: CAGGCTGCTGGGCCTCGGACCCACGAGCCTCCTCTCACTGAGCCAGTGCGGCCAGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp AGGGTGGAAATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTaGCCGCACTGGCTCAGTGAGAGGAGGCTCGTGGGTCCGAGGCCC +
Preference number: 1 (lower is better)
Translates to: RVEMLACGAPEGETL*PHWLSERRLVGPRP
Trigger: GGGCCTCGGACCCACGAGCCTCCTCTCACTGAGCCAGTGCGGCCAGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCATTTCCACCCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 90 bp ACTGGCTCAGTGAGAGGAGGCTCGTGGGTCCGAGGCCCAGCAGCCTaGGGCTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCA +
Preference number: 1 (lower is better)
Translates to: TGSVRGGSWVRGPAA*GSLCLHLSSAMGEP
Trigger: TGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAGCCTCAGGCTGCTGGGCCTCGGACCCACGAGCCTCCTCTCACTGAGCCAGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 90 bp GAGGCTCGTGGGTCCGAGGCCCAGCAGCCTGAGGCTCTCTCTGCTTaGACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTA +
Preference number: 1 (lower is better)
Translates to: EARGSEAQQPEALSA*TCLQPWESHHLTEL
Trigger: TAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAGCCTCAGGCTGCTGGGCCTCGGACCCACGAGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 90 bp ATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGATGGCCAGGCTGTaGTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCTCACTG +
Preference number: 1 (lower is better)
Translates to: MPRLGPEPRFQMARL*FQSTAFSFPSGLSL
Trigger: CAGTGAGAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAGCCTCGGCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 90 bp GAAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAGAATaGCGAGGCTGGGACCAGAACCCAGGTTCCAGATGGCCAGGCTGT +
Preference number: 1 (lower is better)
Translates to: EALEKPGNCLGAQGE*RGWDQNPGSRWPGC
Trigger: ACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp GCTCAGGGAGAATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGATaGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCG +
Preference number: 1 (lower is better)
Translates to: AQGECRGWDQNPGSR*PGCAFSPLHSHSQA
Trigger: CGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp GCCCAGCAGCCTGAGGCTCTCTCTGCTTGCACTTGTCTTCAGCCATaGGAGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCC +
Preference number: 1 (lower is better)
Translates to: AQQPEALSACTCLQP*ESHHLTELQPQLSS
Trigger: GGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAGCCTCAGGCTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp GAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTaGGACCAGAACCCAGGTTCCAGATGGCCAGGCTGTGCTTTCAGT +
Preference number: 1 (lower is better)
Translates to: EKPGNCLGAQGECRG*DQNPGSRWPGCAFS
Trigger: ACTGAAAGCACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp CTAATGCCCTTGCCTGCTTCGGAACTAGTGCGCTCACAAGGGCACTaGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAG +
Preference number: 1 (lower is better)
Translates to: LMPLPASELVRSQGH*PLALNPTGSQRQRQ
Trigger: CTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGCCCTTGTGAGCGCACTAGTTCCGAAGCAGGCAAGGGCATTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 90 bp CTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTaGGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCA +
Preference number: 1 (lower is better)
Translates to: LCLHLSSAMGEPPSH*ATASAFLPQTRPAA
Trigger: TGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 90 bp GACAGTATCCCTTTGGACAGCGCTGCCAGGCTTCCCATCTGGAGATaGGGGGAAAACACAAATAGGTATATGGGCTGGCACAGGGTTTGG +
Preference number: 1 (lower is better)
Translates to: DSIPLDSAARLPIWR*GENTNRYMGWHRVW
Trigger: CCAAACCCTGTGCCAGCCCATATACCTATTTGTGTTTTCCCCTCATCTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGGATACTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 90 bp GGGAGACAGTGGAAGGAGTTATCTAATGGAGAGACAGTATCCCTTTaGACAGCGCTGCCAGGCTTCCCATCTGGAGATGAGGGGAAAACA +
Preference number: 1 (lower is better)
Translates to: GRQWKELSNGETVSL*TALPGFPSGDEGKT
Trigger: TGTTTTCCCCTCATCTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGGATACTGTCTCTCCATTAGATAACTCCTTCCACTGTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 90 bp TCTGTCGGTGATGTCAGCTACTCTTTATTTTCCAGTTGTGAGAACTaGAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAGA +
Preference number: 1 (lower is better)
Translates to: SVGDVSYSLFSSCEN*SPREAWELLRSSGR
Trigger: TCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAACTGGAAAATAAAGAGTAGCTGACATCACCGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 90 bp AGACCACAGACACACAGATGTCATAGTCTTTTGCAGAAACTCCTGTaGAGAAATTCCTTCTGGTATGAAAAGACTCTGTCGGTGATGTCA +
Preference number: 1 (lower is better)
Translates to: RPQTHRCHSLLQKLL*RNSFWYEKTLSVMS
Trigger: TGACATCACCGACAGAGTCTTTTCATACCAGAAGGAATTTCTTCACAGGAGTTTCTGCAAAAGACTATGACATCTGTGTGTCTGTGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGCCGCACTGGCTCAGTaGGAGGAGGCTCGTGGGTCC +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAAALAQ*EEARGS
Trigger: GGACCCACGAGCCTCCTCTCACTGAGCCAGTGCGGC...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGGTAGGGGTCTCTCCTaGTGCATCCCACCGGGCCCA +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAGRGLS*CIPPGP
Trigger: TGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACC...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CAA 90 bp CCCCTTCAACTTCCAGGCAGGGAAGGAGGGAACTGTGTGCTCTCCTaGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGC +
Preference number: 2 (lower is better)
Translates to: PLQLPGREGGNCVLS*DLEAAGCQLPTPTR
Trigger: GCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGTTCCCTCCTTCCCTGCCTGGAAGTTGAAGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGGGTAGGGGTCTCTCCTaGTGCATCCCACCGGGCCCA +
Preference number: 2 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQGRGLS*CIPPGP
Trigger: TGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACC...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCACCTGGCCTTCAGTGCTaGCCCCCTGACTGCAGCTAT +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAPGLQC*PPDCSY
Trigger: ATAGCTGCAGTCAGGGGGGCAGCACTGAAGGCCAGG...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAGGAGCTCAGGGAGAATaGCGAGGCTGGGACCAGAAC +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLGAQGE*RGWDQN
Trigger: GTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCC...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACAGATGGGGCCACCATaGGCCTGTGGCCCCTGCAGA +
Preference number: 2 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLQMGPP*ACGPCR
Trigger: TCTGCAGGGGCCACAGGCCCATGGTGGCCCCATCTG...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCGGATGCGAACTGGGGTaGGAGAGGGGGCTCAGATGG +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVGCELG*ERGLRW
Trigger: CCATCTGAGCCCCCTCTCCCACCCCAGTTCGCATCC...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTACGCTCACAAGGGCACTaGCCCTTGGCTCTCAATCCC +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLRSQGH*PLALNP
Trigger: GGGATTGAGAGCCAAGGGCCAGTGCCCTTGTGAGCG...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATTGGGGAGAGGGGCTCTaGGGTGTGAGAACTGCCCCC +
Preference number: 2 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNWGEGL*GVRTAP
Trigger: GGGGGCAGTTCTCACACCTCAGAGCCCCTCTCCCCA...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp TTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGAGGGCGGTGTGGGGATaGGGCAGAGAGACAGATGCA +
Preference number: 2 (lower is better)
Translates to: LLRSSGRMPRLGPEPRFQRAVWG*GRETDA
Trigger: TGCATCTGTCTCTCTGCCTCATCCCCACACCGCCCT...CTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTACAGAAGACTGGGGGTaGCAGGGCGGTGTGGGGATG +
Preference number: 2 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPTEDWG*QGGVGM
Trigger: CATCCCCACACCGCCCTGCCACCCCCAGTCTTCTGT...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAGAAGGAGAGACACTCTaGCCGCACTGGCTCAGTGAG +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLEGETL*PHWLSE
Trigger: CTCACTGAGCCAGTGCGGCCAGAGTGTCTCTCCTTC...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGGCAGCTCCTGGTTGTaGTGTACAGAGAGGCGCTTC +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAGSSWL*CTERRF
Trigger: GAAGCGCCTCTCTGTACACCACAACCAGGAGCTGCC...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTGGAGGTGTGGGGAGTaGGCAGCTCCTGGTTGTGGT +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVWRCGE*AAPGCG
Trigger: ACCACAACCAGGAGCTGCCCACTCCCCACACCTCCA...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAGAGAGGGGGCTCAGATaGGGCCACCATGGGCCTGTG +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCIERGLR*GHHGPV
Trigger: CACAGGCCCATGGTGGCCCCATCTGAGCCCCCTCTC...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CAA 90 bp CCCTTGCCTGCTTCGGAACTAGTGCGCTCACAAGGGCACTGGCCCTaGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCT +
Preference number: 2 (lower is better)
Translates to: PLPASELVRSQGHWP*ALNPTGSQRQRQQS
Trigger: AGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGCCCTTGTGAGCGCACTAGTTCCGAAGCAGGCAAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGGGCGGTGTGGGGATaGGGCAGAGAGACAGATGCA +
Preference number: 2 (lower is better)
Translates to: RATISLSYSLSFPPSDQTRAVWG*GRETDA
Trigger: TGCATCTGTCTCTCTGCCTCATCCCCACACCGCCCT...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCTGGCCTTCAGTGCTaGCCCCCTGACTGCAGCTAT +
Preference number: 2 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPPGLQC*PPDCSY
Trigger: ATAGCTGCAGTCAGGGGGGCAGCACTGAAGGCCAGG...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCCTTTGGACAGCGCTaGCAGGCTTCCCATCTGGAG +
Preference number: 2 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPPFGQR*QASHLE
Trigger: CTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGG...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCTTTGGACAGCGCTaGCAGGCTTCCCATCTGGAG +
Preference number: 2 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLPFGQR*QASHLE
Trigger: CTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGG...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTGTGGCCCCTGCAGATaGTTTCTCTGGCTTGCCTCC +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVCGPCR*FLWLAS
Trigger: GGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACA...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTACTTGGACTTGGAAGCTaGAGGCTGCCAGCTTCCTAC +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLLGLGS*RLPASY
Trigger: GTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAACAGAAGACTGGGGGTaGCAGGGCGGTGTGGGGATG +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCITEDWG*QGGVGM
Trigger: CATCCCCACACCGCCCTGCCACCCCCAGTCTTCTGT...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACTAGGCCCCGGCACCTaGAGAGTGACATGTGAGGAG +
Preference number: 2 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLLGPGT*RVTCEE
Trigger: CTCCTCACATGTCACTCTCCAGGTGCCGGGGCCTAG...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCGGCAGCTCCTGGTTGTaGTGTACAGAGAGGCGCTTC +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVGSSWL*CTERRF
Trigger: GAAGCGCCTCTCTGTACACCACAACCAGGAGCTGCC...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAAAGGGCACTGGCCCTTaGCTCTCAATCCCACAGGAA +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLKGTGP*LSIPQE
Trigger: TTCCTGTGGGATTGAGAGCCAAGGGCCAGTGCCCTT...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGGGGCTCTGAGGTGTaGGAACTGCCCCCATTGCTT +
Preference number: 2 (lower is better)
Translates to: RATISLSYSLSFPPSDQTRGSEV*ELPPLL
Trigger: AAGCAATGGGGGCAGTTCTCACACCTCAGAGCCCCT...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCTGGTTTGGGGAGAGGGGCTCTaGGGTGTGAGAACTGCCCCC +
Preference number: 2 (lower is better)
Translates to: LTDFPGHSHFLISDTNLVWGEGL*GVRTAP
Trigger: GGGGGCAGTTCTCACACCTCAGAGCCCCTCTCCCCA...AACCAGATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATACAAGCGGCCTCTCACTaGTTTCCCAGGCCACAGCCA +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCIQAASH*FPRPQP
Trigger: TGGCTGTGGCCTGGGAAATCAGTGAGAGGCCGCTTG...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAACGAGGCCCAGCAGCCTaGGGCTCTCTCTGCTTGCAC +
Preference number: 2 (lower is better)
Translates to: SYPYPLCIYHLMPLPASERGPAA*GSLCLH
Trigger: GTGCAAGCAGAGAGAGCCTCAGGCTGCTGGGCCTCG...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GTTGTGAGAACTGAAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAGGTAGGGGTCTCTCCTaGTGCATCCCACCGGGCCCA +
Preference number: 2 (lower is better)
Translates to: VVRTEALEKPGNCLGAQGGRGLS*CIPPGP
Trigger: TGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACC...TCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCCCTTTGGACAGCGCTaGCAGGCTTCCCATCTGGAG +
Preference number: 2 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNPFGQR*QASHLE
Trigger: CTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGG...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACAGCGGAGCTCAGGGAGAATaGCGAGGCTGGGACCAGAAC +
Preference number: 2 (lower is better)
Translates to: LLALVFSHGRATISLSYSGAQGE*RGWDQN
Trigger: GTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCC...GCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCGGAGCTCAGGGAGAATaGCGAGGCTGGGACCAGAAC +
Preference number: 2 (lower is better)
Translates to: LSLLALVFSHGRATISLSGAQGE*RGWDQN
Trigger: GTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCC...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTAAGGGTGAAATGGCAATaGGGCACAGGAGGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLRVKWQ*GTGGQP
Trigger: AGGCTGGCCTCCTGTGCCCCATTGCCATTTCACCCT...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCCATAGGAGGAAGCAATaGCTGTTACGAGGTTGGCGG +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVHRRKQ*LLRGWR
Trigger: CCGCCAACCTCGTAACAGTCATTGCTTCCTCCTATG...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAAGGGGCTCTGAGGTGTaGGAACTGCCCCCATTGCTT +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCIRGSEV*ELPPLL
Trigger: AAGCAATGGGGGCAGTTCTCACACCTCAGAGCCCCT...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGAGGGCGGTGTGGGGATaGGGCAGAGAGACAGATGCA +
Preference number: 2 (lower is better)
Translates to: PLALNPTGSQRQRQQSKERAVWG*GRETDA
Trigger: TGCATCTGTCTCTCTGCCTCATCCCCACACCGCCCT...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAGCCAGCCTTATCTCTTaGTTCCAGCCTGGAACCAAT +
Preference number: 2 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLASLIS*FQPGTN
Trigger: ATTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGC...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGAGAAGCCTGGGAATTaGTTAGGAGCTCAGGGAGAA +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAEKPGN*LGAQGE
Trigger: TTCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTC...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCTCCAGAGGGTGGAAATaGTGGCATGTGGGGCGCCTG +
Preference number: 2 (lower is better)
Translates to: LWPLQMLSLACLPWHFLISRGWK*WHVGRL
Trigger: CAGGCGCCCCACATGCCAGCATTTCCACCCTCTGGA...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAAAGGAGGGAACTGTGTaGTCTCCTTGGACTTGGAAG +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAKEGTV*SPWTWK
Trigger: CTTCCAAGTCCAAGGAGAGCACACAGTTCCCTCCTT...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCATGCAGATGCTTTCTCTaGCTTGCCTCCCTTGGCATT +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKACRCFL*LASLGI
Trigger: AATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCA...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCATAGGAGGAAGCAATaGCTGTTACGAGGTTGGCGG +
Preference number: 2 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLHRRKQ*LLRGWR
Trigger: CCGCCAACCTCGTAACAGTCATTGCTTCCTCCTATG...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCAGGGGCTCTGAGGTGTaGGAACTGCCCCCATTGCTT +
Preference number: 2 (lower is better)
Translates to: LWPLQMLSLACLPWHFLIRGSEV*ELPPLL
Trigger: AAGCAATGGGGGCAGTTCTCACACCTCAGAGCCCCT...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCCTGGCTCCTGGACTTTaGGCTAGGGTGAAATGGCAA +
Preference number: 2 (lower is better)
Translates to: RATISLSYSLSFPPSDQTLAPGL*ARVKWQ
Trigger: TTGCCATTTCACCCTAGCTCAAAGTCCAGGAGCCAG...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGAGAACTGCCCCCATTaGTTGGATCCTTTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAENCPH*LDPFLL
Trigger: GAGAAGAAAAGGATCCAAGCAATGGGGGCAGTTCTC...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAACAGGCACACACACATaGACACACATGTGCATACCA +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKATGTHT*THMCIP
Trigger: TGGTATGCACATGTGTGTGCATGTGTGTGTGCCTGT...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGCTTGAAGAGCCTTTCTaGAAGCCTGGCTCCTGGACT +
Preference number: 2 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQLEEPF*KPGSWT
Trigger: AGTCCAGGAGCCAGGCTTCCAGAAAGGCTCTTCAAG...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCGAAGGAGAGACACTCTaGCCGCACTGGCTCAGTGAG +
Preference number: 2 (lower is better)
Translates to: LWPLQMLSLACLPWHFLIEGETL*PHWLSE
Trigger: CTCACTGAGCCAGTGCGGCCAGAGTGTCTCTCCTTC...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATGTTTCTCCGGCTCCTTaGACACACAGAGGTACACGT +
Preference number: 2 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNVSPAP*THRGTR
Trigger: ACGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAAC...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACAGCCTGGCTCCTGGACTTTaGGCTAGGGTGAAATGGCAA +
Preference number: 2 (lower is better)
Translates to: LLALVFSHGRATISLSYSLAPGL*ARVKWQ
Trigger: TTGCCATTTCACCCTAGCTCAAAGTCCAGGAGCCAG...GCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATATCCAGTTGTGAGAACTaGAGCCCTAGAGAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCISSCEN*SPREAW
Trigger: CCAGGCTTCTCTAGGGCTTCAGTTCTCACAACTGGA...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp GCACTGGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCAAGCAACAGCATACATaGCACCCAGTACAGCTACAC +
Preference number: 2 (lower is better)
Translates to: ALALGSQSHRKSEAKAAVKQQHT*HPVQLH
Trigger: GTGTAGCTGTACTGGGTGTCATGTATGCTGTTGCTT...GACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCCTGGAGAGTGACATGTaGGGAGAATCCAGAGGGTGG +
Preference number: 2 (lower is better)
Translates to: LWPLQMLSLACLPWHFLILESDM*GESRGW
Trigger: CCACCCTCTGGATTCTCCTCACATGTCACTCTCCAG...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAACCGGCACCTGGAGAGTaGCATGTGAGGAGAATCCAG +
Preference number: 2 (lower is better)
Translates to: SYPYPLCIYHLMPLPASEPAPGE*HVRRIQ
Trigger: CTGGATTCTCCTCACATGTCACTCTCCAGGTGCCGG...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGGAGAAGCCTGGGAATTaGTTAGGAGCTCAGGGAGAA +
Preference number: 2 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQEKPGN*LGAQGE
Trigger: TTCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTC...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAATGCTTTCTCTGGCTTaGCTCCCTTGGCATTTTCTT +
Preference number: 2 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAMLSLA*LPWHFL
Trigger: AAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCAT...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp TGGCAATGGGGCACAGGAGGCCAGCCTTATCTCTTGCTTCCAGCCTGGAACCAAAATAGGTATATGGGCTaGCACAGGGTTTGGGGAGAG +
Preference number: 2 (lower is better)
Translates to: WQWGTGGQPYLLLPAWNQNRYMG*HRVWGE
Trigger: CTCTCCCCAAACCCTGTGCCAGCCCATATACCTATT...TTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGCCTCCTGTGCCCCATTGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCAATAGGTATATGGGCTaGCACAGGGTTTGGGGAGAG +
Preference number: 2 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLNRYMG*HRVWGE
Trigger: CTCTCCCCAAACCCTGTGCCAGCCCATATACCTATT...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACAGCCTTGAAGAGCCTTTCTaGAAGCCTGGCTCCTGGACT +
Preference number: 2 (lower is better)
Translates to: LLALVFSHGRATISLSYSLEEPF*KPGSWT
Trigger: AGTCCAGGAGCCAGGCTTCCAGAAAGGCTCTTCAAG...GCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGCATAGGAGGAAGCAATaGCTGTTACGAGGTTGGCGG +
Preference number: 2 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEHRRKQ*LLRGWR
Trigger: CCGCCAACCTCGTAACAGTCATTGCTTCCTCCTATG...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCGTTTCTCCGGCTCCTTaGACACACAGAGGTACACGT +
Preference number: 2 (lower is better)
Translates to: LWPLQMLSLACLPWHFLIVSPAP*THRGTR
Trigger: ACGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAAC...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCTTCCCATCTGGAGATaGGGGGAAAACACAAATAGG +
Preference number: 2 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLLPIWR*GENTNR
Trigger: CCTATTTGTGTTTTCCCCTCATCTCCAGATGGGAAG...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAAATAGGTATATGGGCTaGCACAGGGTTTGGGGAGAG +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCINRYMG*HRVWGE
Trigger: CTCTCCCCAAACCCTGTGCCAGCCCATATACCTATT...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTAACACAAATAGGTATATaGGCTGGCACAGGGTTTGGG +
Preference number: 2 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLTQIGI*AGTGFG
Trigger: CCCAAACCCTGTGCCAGCCCATATACCTATTTGTGT...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACCATCCCCAAACCTaGCTTCTCTCTAAGGCCCAT +
Preference number: 2 (lower is better)
Translates to: LSLLALVFSHGRATISLSYHPQT*LLSKAH
Trigger: ATGGGCCTTAGAGAGAAGCCAGGTTTGGGGATGGTA...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACAGCCTTCCCATCTGGAGATaGGGGGAAAACACAAATAGG +
Preference number: 2 (lower is better)
Translates to: LLALVFSHGRATISLSYSLPIWR*GENTNR
Trigger: CCTATTTGTGTTTTCCCCTCATCTCCAGATGGGAAG...GCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATACTTCCCATCTGGAGATaGGGGGAAAACACAAATAGG +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCILPIWR*GENTNR
Trigger: CCTATTTGTGTTTTCCCCTCATCTCCAGATGGGAAG...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAATCCAGTTGTGAGAACTaGAGCCCTAGAGAAGCCTGG +
Preference number: 2 (lower is better)
Translates to: SYPYPLCIYHLMPLPASESSCEN*SPREAW
Trigger: CCAGGCTTCTCTAGGGCTTCAGTTCTCACAACTGGA...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAAAGCAACAGCATACATaGCACCCAGTACAGCTACAC +
Preference number: 2 (lower is better)
Translates to: LGLGSCRLPASYPYPLCIKQQHT*HPVQLH
Trigger: GTGTAGCTGTACTGGGTGTCATGTATGCTGTTGCTT...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGAGGGTGAAATGGCAATaGGGCACAGGAGGCCAGCCT +
Preference number: 2 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKRVKWQ*GTGGQP
Trigger: AGGCTGGCCTCCTGTGCCCCATTGCCATTTCACCCT...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GTTGTGAGAACTGAAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAGAGAACTGCCCCCATTaGTTGGATCCTTTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: VVRTEALEKPGNCLGAQGENCPH*LDPFLL
Trigger: GAGAAGAAAAGGATCCAAGCAATGGGGGCAGTTCTC...TCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp GTTGTGAGAACTGAAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAACAGGCACACACACATaGACACACATGTGCATACCA +
Preference number: 2 (lower is better)
Translates to: VVRTEALEKPGNCLGAQGTGTHT*THMCIP
Trigger: TGGTATGCACATGTGTGTGCATGTGTGTGTGCCTGT...TCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR TCA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGCTGGCTCCTGGACTTTaGGCTAGGGTGAAATGGCAA +
Preference number: 2 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKLAPGL*ARVKWQ
Trigger: TTGCCATTTCACCCTAGCTCAAAGTCCAGGAGCCAG...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGACATGCACACACATGTaGATACCATACCATACCATA +
Preference number: 2 (lower is better)
Translates to: PLALNPTGSQRQRQQSKETCTHM*IPYHTI
Trigger: TATGGTATGGTATGGTATGCACATGTGTGTGCATGT...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CCA 90 bp GTTGTGAGAACTGAAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGCTCAGGGAACTGCCCCCATTGCTTaGATCCTTTTCTTCTCAAAA +
Preference number: 2 (lower is better)
Translates to: VVRTEALEKPGNCLGAQGTAPIA*ILFFSK
Trigger: TTTTGAGAAGAAAAGGATCCAAGCAATGGGGGCAGT...TCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR GCA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGGAGAACTGCCCCCATTaGTTGGATCCTTTTCTTCTC +
Preference number: 2 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKENCPH*LDPFLL
Trigger: GAGAAGAAAAGGATCCAAGCAATGGGGGCAGTTCTC...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp GGACCAGTGGACCAGCAGGGTAGGGGTCTCTCCTGCTaGATCCCACCGGGCCCAGGTCAGCGCCCCGTGCAC +
Preference number: 3 (lower is better)
Translates to: GPVDQQGRGLSC*IPPGPGQRPVH
Trigger: GTGCACGGGGCGCTGACCTGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACCCTGCTGGTCCACTGGTCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp ATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTaGCCGCACTGGCTCAGTGAGAGGAGGCTCGTGGGT +
Preference number: 3 (lower is better)
Translates to: MLACGAPEGETL*PHWLSERRLVG
Trigger: ACCCACGAGCCTCCTCTCACTGAGCCAGTGCGGCCAGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp CTAGGGGGAGGTAAGCTGGGCTGGAGGTGTGGGGAGTaGGCAGCTCCTGGTTGTGGTGTACAGAGAGGCGCT +
Preference number: 3 (lower is better)
Translates to: LGGGKLGWRCGE*AAPGCGVQRGA
Trigger: AGCGCCTCTCTGTACACCACAACCAGGAGCTGCCCACTCCCCACACCTCCAGCCCAGCTTACCTCCCCCTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp CCTCCTTCTCACACGCCCACTCTAGGCCCCGGCACCTaGAGAGTGACATGTGAGGAGAATCCAGAGGGTGGA +
Preference number: 3 (lower is better)
Translates to: PPSHTPTLGPGT*RVTCEENPEGG
Trigger: TCCACCCTCTGGATTCTCCTCACATGTCACTCTCCAGGTGCCGGGGCCTAGAGTGGGCGTGTGAGAAGGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp CCCTTCAACTTCCAGGCAGGGAAGGAGGGAACTGTGTaGTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGC +
Preference number: 3 (lower is better)
Translates to: PFNFQAGKEGTV*SPWTWKLQAAS
Trigger: GCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGTTCCCTCCTTCCCTGCCTGGAAGTTGAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp GGGAATTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTaGGACCAGAACCCAGGTTCCAGATGGCCAGGCTGT +
Preference number: 3 (lower is better)
Translates to: GNCLGAQGECRG*DQNPGSRWPGC
Trigger: ACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAATTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp TTCCAGGCAGGGAAGGAGGGAACTGTGTGCTCTCCTTaGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCC +
Preference number: 3 (lower is better)
Translates to: FQAGKEGTVCSP*TWKLQAASFLP
Trigger: GGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGTTCCCTCCTTCCCTGCCTGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGGTGGGCAGCTCCTGGTaGTGGTGTACAGAGAGGCGC +
Preference number: 3 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEVGSSW*WCTERR
Trigger: GCGCCTCTCTGTACACCACAACCAGGAGCTGCCCAC...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp CTGGGACCAGAACCCAGGTTCCAGATGGCCAGGCTGTaGTTTCAGTCCACTGCATTCTCATTCCCAAGCGGC +
Preference number: 3 (lower is better)
Translates to: LGPEPRFQMARL*FQSTAFSFPSG
Trigger: GCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGGAACCTGGGTTCTGGTCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp GGGCGGTGTGGGGATGAGGCAGAGAGACAGATGCACTaGTTAGAGACCGGTGAGAACAGGTCATACCATCCC +
Preference number: 3 (lower is better)
Translates to: GRCGDEAERQMH*LETGENRSYHP
Trigger: GGGATGGTATGACCTGTTCTCACCGGTCTCTAACCAGTGCATCTGTCTCTCTGCCTCATCCCCACACCGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp TTGCCTGCTTCGGAACTAGTGCGCTCACAAGGGCACTaGCCCTTGGCTCTCAATCCCACAGGAAGTCAGAGG +
Preference number: 3 (lower is better)
Translates to: LPASELVRSQGH*PLALNPTGSQR
Trigger: CCTCTGACTTCCTGTGGGATTGAGAGCCAAGGGCCAGTGCCCTTGTGAGCGCACTAGTTCCGAAGCAGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp TGGCAATGGGGCACAGGAGGCCAGCCTTATCTCTTGCTTCCAGCCTGGAACCAAGGTTTCTCCGGCTCCTaGAACACACAGAGGTACACG +
Preference number: 3 (lower is better)
Translates to: WQWGTGGQPYLLLPAWNQGFSGS*NTQRYT
Trigger: CGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAACC...TTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGCCTCCTGTGCCCCATTGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTGGCCAGCCTTATCTCTaGCTTCCAGCCTGGAACCAA +
Preference number: 3 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPGQPYL*LPAWNQ
Trigger: TTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGCC...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCGGCCAGCCTTATCTCTaGCTTCCAGCCTGGAACCAA +
Preference number: 3 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLGQPYL*LPAWNQ
Trigger: TTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGCC...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCGGTTTCTCCGGCTCCTaGAACACACAGAGGTACACG +
Preference number: 3 (lower is better)
Translates to: LSLLALVFSHGRATISLSGFSGS*NTQRYT
Trigger: CGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAACC...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGAGAGAAGCCTGGGAATaGCTTAGGAGCTCAGGGAGA +
Preference number: 3 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQREAWE*LRSSGR
Trigger: TCTCCCTGAGCTCCTAAGCAATTCCCAGGCTTCTCT...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp TTTCTGGAAGCCTGGCTCCTGGACTTTGAGCTAGGGTaGAATGGCAATGGGGCACAGGAGGCCAGCCTTATC +
Preference number: 3 (lower is better)
Translates to: FLEAWLLDFELG*NGNGAQEASLI
Trigger: GATAAGGCTGGCCTCCTGTGCCCCATTGCCATTTCACCCTAGCTCAAAGTCCAGGAGCCAGGCTTCCAGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp CACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTaGGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGA +
Preference number: 3 (lower is better)
Translates to: HLSSAMGEPPSH*ATASAFLPQTR
Trigger: TCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp CTACCCGCTATGTATATACCACCTAATGCCCTTGCCTaGTTCGGAACTAGTGCGCTCACAAGGGCACTGGCC +
Preference number: 3 (lower is better)
Translates to: LPAMYIPPNALA*FGTSALTRALA
Trigger: GGCCAGTGCCCTTGTGAGCGCACTAGTTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp CTGGAGACAGACCCGGTTTTGGTTTCTCCGGCTCCTTaGACACACAGAGGTACACGTCCTACCATAGGAGGA +
Preference number: 3 (lower is better)
Translates to: LETDPVLVSPAP*THRGTRPTIGG
Trigger: TCCTCCTATGGTAGGACGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAACCAAAACCGGGTCTGTCTCCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp AATGGCAATGGGGCACAGGAGGCCAGCCTTATCTCTTaGTTCCAGCCTGGAACCAATAGACAGAAGACTGGG +
Preference number: 3 (lower is better)
Translates to: NGNGAQEASLIS*FQPGTNRQKTG
Trigger: CCCAGTCTTCTGTCTATTGGTTCCAGGCTGGAAGCAAGAGATAAGGCTGGCCTCCTGTGCCCCATTGCCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp CAGGTTCCAGATGGCCAGGCTGTGCTTTCAGTCCACTaGATTCTCATTCCCAAGCGGCCTCTCACTGATTTC +
Preference number: 3 (lower is better)
Translates to: QVPDGQAVLSVH*ILIPKRPLTDF
Trigger: GAAATCAGTGAGAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGGAACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR GCA 72 bp AACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTaGCAGCTTCCTACCCCTACCCGCTATGTATATACC +
Preference number: 3 (lower is better)
Translates to: NCVLSLDLEAAG*QLPTPTRYVYT
Trigger: GGTATATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp AGAACAGGTCATACCATCCCCAAACCTGGCTTCTCTCTAAGGCCCATCTTACCTGGTTTCTCCGGCTCCTaGAACACACAGAGGTACACG +
Preference number: 3 (lower is better)
Translates to: RTGHTIPKPGFSLRPILPGFSGS*NTQRYT
Trigger: CGTGTACCTCTGTGTGTTCAAGGAGCCGGAGAAACC...AGGTAAGATGGGCCTTAGAGAGAAGCCAGGTTTGGGGATGGTATGACCTGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATTCCTTAAGCTTGCTCTaGAAGAGCCTTTCTGGAAGC +
Preference number: 3 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNSLSLL*KSLSGS
Trigger: GCTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGA...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCATGTATTTCCTTAAGCTaGCTCTTGAAGAGCCTTTCT +
Preference number: 3 (lower is better)
Translates to: EETWLGSSRSQGWGSVKACISLS*LLKSLS
Trigger: AGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACA...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAATATCATACAGCCACTaGGCTCACTGTATTTCCTTA +
Preference number: 3 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLISYSH*AHCISL
Trigger: TAAGGAAATACAGTGAGCCAAGTGGCTGTATGATAT...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAATCTCTCTGCTTGCACTaGTCTTCAGCCATGGGAGAG +
Preference number: 3 (lower is better)
Translates to: SYPYPLCIYHLMPLPASESLCLH*SSAMGE
Trigger: CTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGA...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGGATGCTTTCTCTGGCTaGCCTCCCTTGGCATTTTCT +
Preference number: 3 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEDAFSG*PPLAFS
Trigger: AGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATC...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCTCCTTAAGCTTGCTCTaGAAGAGCCTTTCTGGAAGC +
Preference number: 3 (lower is better)
Translates to: LWPLQMLSLACLPWHFLISLSLL*KSLSGS
Trigger: GCTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGA...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp TCCCATGTCCGTGCACATACACCTCCAGGTACCTCGTaGGACCACAGACACACAGATGTCATAGTCTTTTGC +
Preference number: 3 (lower is better)
Translates to: SHVRAHTPPGTS*DHRHTDVIVFC
Trigger: GCAAAAGACTATGACATCTGTGTGTCTGTGGTCTCACGAGGTACCTGGAGGTGTATGTGCACGGACATGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp CTCAGACCAGACCAGCAGCAGAAGCAACAGCATACATaGCACCCAGTACAGCTACACACACACCACTTTTCC +
Preference number: 3 (lower is better)
Translates to: LRPDQQQKQQHT*HPVQLHTHHFS
Trigger: GGAAAAGTGGTGTGTGTGTAGCTGTACTGGGTGTCATGTATGCTGTTGCTTCTGCTGCTGGTCTGGTCTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CCA 72 bp TGGAAGGAGTTATCTAATGGAGAGACAGTATCCCTTTaGACAGCGCTGCCAGGCTTCCCATCTGGAGATGAG +
Preference number: 3 (lower is better)
Translates to: WKELSNGETVSL*TALPGFPSGDE
Trigger: CTCATCTCCAGATGGGAAGCCTGGCAGCGCTGTCCAAAGGGATACTGTCTCTCCATTAGATAACTCCTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCATATCATACAGCCACTaGGCTCACTGTATTTCCTTA +
Preference number: 3 (lower is better)
Translates to: RATISLSYSLSFPPSDQTISYSH*AHCISL
Trigger: TAAGGAAATACAGTGAGCCAAGTGGCTGTATGATAT...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR-3UTR CAA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCTGTATTTCCTTAAGCTaGCTCTTGAAGAGCCTTTCT +
Preference number: 3 (lower is better)
Translates to: LWPLQMLSLACLPWHFLICISLS*LLKSLS
Trigger: AGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACA...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp GATGTCAGCTACTCTTTATTTTCCAGTTGTGAGAACTaGAGCCCTAGAGAAGCCTGGGAATTGCTTAGGAGC +
Preference number: 3 (lower is better)
Translates to: DVSYSLFSSCEN*SPREAWELLRS
Trigger: GCTCCTAAGCAATTCCCAGGCTTCTCTAGGGCTTCAGTTCTCACAACTGGAAAATAAAGAGTAGCTGACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR TCA 72 bp TTTGCAGAAACTCCTGTGAAGAAATTCCTTCTGGTATaGAAAGACTCTGTCGGTGATGTCAGCTACTCTTTA +
Preference number: 3 (lower is better)
Translates to: FAETPVKKFLLV*KDSVGDVSYSL
Trigger: TAAAGAGTAGCTGACATCACCGACAGAGTCTTTTCATACCAGAAGGAATTTCTTCACAGGAGTTTCTGCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCGGGCCAGCTCCCGTTaGTTCTCCTCCCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLRASSR*FSSRAS
Trigger: TGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCG...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACGGGCCAGCTCCCGTTaGTTCTCCTCCCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLRASSR*FSSRAS
Trigger: TGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCG...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp GACCAGTGGACCAGCAGGGTAGGGGTCTCTCCTGCTGCATCCCACCGGGCCCAGGTCAAGAGCTACCAGTaGCTTCTCATCAGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: DQWTSRVGVSPAASHRAQVKSYQ*LLIRAL
Trigger: CAGAGCCCTGATGAGAAGCCACTGGTAGCTCTTGAC...CTGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACCCTGCTGGTCCACTGGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAGTGGAGGAAGTGGCCTaGCAACACATGCAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLVEEVA*QHMQVG
Trigger: CCCCACCTGCATGTGTTGTCAGGCCACTTCCTCCAC...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGGGCTGCATCTCCGAGTaGGCGGTGGGCACCTGGAAC +
Preference number: 4 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQGCISE*AVGTWN
Trigger: GTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCC...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp GAATCCAGAGGGTGGAAATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTGCTGGATCCAGCGGCTaGATCTCCGAGTGCGCGGTG +
Preference number: 4 (lower is better)
Translates to: ESRGWKCWHVGRLKERHSAGSSG*ISECAV
Trigger: CACCGCGCACTCGGAGATGCAGCCGCTGGATCCAGC...AGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCATTTCCACCCTCTGGATTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp TTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LLRSSGRMPRLGPEPRFQVTVSV*DRGCGW
Trigger: CCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGAC...CTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGCGGGCCAGCTCCCGTTaGTTCTCCTCCCGGGCGTCA +
Preference number: 4 (lower is better)
Translates to: PLALNPTGSQRQRQQSKERASSR*FSSRAS
Trigger: TGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCG...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCGCTGCGGCTGGATCCTaGAACCGGTCGATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLAAAGS*NRSISS
Trigger: GGAGGAGATCGACCGGTTCCAGGATCCAGCCGCAGC...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
CDS-3UTR CCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCGCTGCGGCTGGATCCTaGAACCGGTCGATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RATISLSYSLSFPPSDQTAAAGS*NRSISS
Trigger: GGAGGAGATCGACCGGTTCCAGGATCCAGCCGCAGC...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
3UTR CAA 72 bp CTTCCAGGCAGGGAAGGAGGGAACTGTGTGCTCTCCTaGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACC +
Preference number: 4 (lower is better)
Translates to: LPGREGGNCVLS*DLEAAGCQLPT
Trigger: GGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGTTCCCTCCTTCCCTGCCTGGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTAGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLVTVSV*DRGCGW
Trigger: CCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGAC...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCTCTTGGGTTGCTGGTTaGCAGGGCTGCCCATGCTGC +
Preference number: 4 (lower is better)
Translates to: RATISLSYSLSFPPSDQTSWVAG*QGCPCC
Trigger: GCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGA...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCTCTTGGGTTGCTGGTTaGCAGGGCTGCCCATGCTGC +
Preference number: 4 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLSWVAG*QGCPCC
Trigger: GCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGA...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGCAGGGCTGCCCATGCTaGCGTTCTTCAGGGAACCCT +
Preference number: 4 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQQGCPC*RSSGNP
Trigger: AGGGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTG...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp GACCAGTGGACCAGCAGGGTAGGGGTCTCTCCTGCTGCATCCCACCGGGCCCAGTGGATGTTCAAATCTTaGTTGATCTCGGCAGAGGAG +
Preference number: 4 (lower is better)
Translates to: DQWTSRVGVSPAASHRAQWMFKS*LISAEE
Trigger: CTCCTCTGCCGAGATCAACCAAGATTTGAACATCCA...CTGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACCCTGCTGGTCCACTGGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108050.2
CDS-3UTR CCA 90 bp TTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGGAATGTGGCAGGCGGTaGAGGAAGTGGCCTGACAAC +
Preference number: 4 (lower is better)
Translates to: LLRSSGRMPRLGPEPRFQECGRR*RKWPDN
Trigger: GTTGTCAGGCCACTTCCTCCACCGCCTGCCACATTC...CTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGTCTCCGAGTGCGCGGTaGGCACCTGGAACCGGTCGA +
Preference number: 4 (lower is better)
Translates to: PLALNPTGSQRQRQQSKESPSAR*APGTGR
Trigger: TCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGA...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTACAGCGTGGAGGAAGTGGCCTaGCAACACATGCAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: LLALVFSHGRATISLSYSVEEVA*QHMQVG
Trigger: CCCCACCTGCATGTGTTGTCAGGCCACTTCCTCCAC...GCTGTAGCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCATTGTTCTTCTTGGGTTaGTGGTTGACAGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: EETWLGSSRSQGWGSVKALFFLG*WLTGLP
Trigger: GGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAA...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CCCGGGGCTGGAGACAGACCCGGTTTTGGTTTCTCCGGCTCCTTGAACACACAGTGGCCTGACAACACATaGAGGTGGGGTTCACAGACT +
Preference number: 4 (lower is better)
Translates to: PGAGDRPGFGFSGSLNTQWPDNT*RWGSQT
Trigger: AGTCTGTGAACCCCACCTGCATGTGTTGTCAGGCCA...CTGTGTGTTCAAGGAGCCGGAGAAACCAAAACCGGGTCTGTCTCCAGCCCCGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp AGAGCCACCATCTCACTGAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGGCGGTGGAGGAAGTaGCCTGACAACACATGCAGG +
Preference number: 4 (lower is better)
Translates to: RATISLSYSLSFPPSDQTRRWRK*PDNTCR
Trigger: CCTGCATGTGTTGTCAGGCCACTTCCTCCACCGCCT...GGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTCAGTGAGATGGTGGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp GAATCCAGAGGGTGGAAATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTAGGCGGTGGAGGAAGTaGCCTGACAACACATGCAGG +
Preference number: 4 (lower is better)
Translates to: ESRGWKCWHVGRLKERHSRRWRK*PDNTCR
Trigger: CCTGCATGTGTTGTCAGGCCACTTCCTCCACCGCCT...AGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCATTTCCACCCTCTGGATTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTAGAATGTGGCAGGCGGTaGAGGAAGTGGCCTGACAAC +
Preference number: 4 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLECGRR*RKWPDN
Trigger: GTTGTCAGGCCACTTCCTCCACCGCCTGCCACATTC...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTACCCGCTATGTATAGCCTCGTCCGGGCCATaGCGTTGTTCTTCTTGGGTT +
Preference number: 4 (lower is better)
Translates to: LGLGSCRLPASYPYPLCIASSGP*RCSSWV
Trigger: AACCCAAGAAGAACAACGTCATGGCCCGGACGAGGC...TATACATAGCGGGTAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp TTGCTTAGGAGCTCAGGGAGAATGCCGAGGCTGGGACCAGAACCCAGGTTCCAGTTCTTCTTGGGTTGCTaGTTGACAGGGCTGCCCATG +
Preference number: 4 (lower is better)
Translates to: LLRSSGRMPRLGPEPRFQFFLGC*LTGLPM
Trigger: CATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAA...CTGGAACCTGGGTTCTGGTCCCAGCCTCGGCATTCTCCCTGAGCTCCTAAGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCGAATGTGGCAGGCGGTaGAGGAAGTGGCCTGACAAC +
Preference number: 4 (lower is better)
Translates to: LSLLALVFSHGRATISLSECGRR*RKWPDN
Trigger: GTTGTCAGGCCACTTCCTCCACCGCCTGCCACATTC...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCTGGTTGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LTDFPGHSHFLISDTNLVVTVSV*DRGCGW
Trigger: CCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGAC...AACCAGATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGGCCTCGTCCGGGCCATaGCGTTGTTCTTCTTGGGTT +
Preference number: 4 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEASSGP*RCSSWV
Trigger: AACCCAAGAAGAACAACGTCATGGCCCGGACGAGGC...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCTTGTTCTTCTTGGGTTaGTGGTTGACAGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLLFFLG*WLTGLP
Trigger: GGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAA...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTTGGCCTGACAACACATaGAGGTGGGGTTCACAGACT +
Preference number: 4 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPWPDNT*RWGSQT
Trigger: AGTCTGTGAACCCCACCTGCATGTGTTGTCAGGCCA...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCTTCTTCTTGGGTTGCTaGTTGACAGGGCTGCCCATG +
Preference number: 4 (lower is better)
Translates to: QMARLCFQSTAFSFPSGLFFLGC*LTGLPM
Trigger: CATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAA...GAGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp GAATCCAGAGGGTGGAAATGCTGGCATGTGGGGCGCCTGAAGGAGAGACACTCTGTCAAGAGCTACCAGTaGCTTCTCATCAGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: ESRGWKCWHVGRLKERHSVKSYQ*LLIRAL
Trigger: CAGAGCCCTGATGAGAAGCCACTGGTAGCTCTTGAC...AGAGTGTCTCTCCTTCAGGCGCCCCACATGCCAGCATTTCCACCCTCTGGATTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCAGGCGGTGGAGGAAGTaGCCTGACAACACATGCAGG +
Preference number: 4 (lower is better)
Translates to: LWPLQMLSLACLPWHFLIRRWRK*PDNTCR
Trigger: CCTGCATGTGTTGTCAGGCCACTTCCTCCACCGCCT...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp AGAACAGGTCATACCATCCCCAAACCTGGCTTCTCTCTAAGGCCCATCTTACCTCAGGGCTGCCCATGCTaGCGTTCTTCAGGGAACCCT +
Preference number: 4 (lower is better)
Translates to: RTGHTIPKPGFSLRPILPQGCPC*RSSGNP
Trigger: AGGGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTG...AGGTAAGATGGGCCTTAGAGAGAAGCCAGGTTTGGGGATGGTATGACCTGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATTTGTTCTTCTTGGGTTaGTGGTTGACAGGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNLFFLG*WLTGLP
Trigger: GGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAA...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR GCA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCTGGCCTGACAACACATaGAGGTGGGGTTCACAGACT +
Preference number: 4 (lower is better)
Translates to: LSLLALVFSHGRATISLSWPDNT*RWGSQT
Trigger: AGTCTGTGAACCCCACCTGCATGTGTTGTCAGGCCA...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CGGCCTCTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATTTCTTCTTGGGTTGCTaGTTGACAGGGCTGCCCATG +
Preference number: 4 (lower is better)
Translates to: RPLTDFPGHSHFLISDTNFFLGC*LTGLPM
Trigger: CATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAA...ATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAGAGGCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CCCGGGGCTGGAGACAGACCCGGTTTTGGTTTCTCCGGCTCCTTGAACACACAGTGGATGTTCAAATCTTaGTTGATCTGCTCGGCAGAG +
Preference number: 4 (lower is better)
Translates to: PGAGDRPGFGFSGSLNTQWMFKS*LICSAE
Trigger: CTCTGCCGAGCAGATCAACCAAGATTTGAACATCCA...CTGTGTGTTCAAGGAGCCGGAGAAACCAAAACCGGGTCTGTCTCCAGCCCCGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGTGCGCGGTGGGCACCTaGAACCGGTCGATCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKCAVGT*NRSISS
Trigger: GGAGGAGATCGACCGGTTCCAGGTGCCCACCGCGCA...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGTGTTCAAATCTTGGTTaGTCTGCTCGGCAGAGGAGT +
Preference number: 4 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQCSNLG*SARQRS
Trigger: ACTCCTCTGCCGAGCAGATCAACCAAGATTTGAACA...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCTGGTTGTCAAGAGCTACCAGTaGCTTCTCATCAGGGCTCTG +
Preference number: 4 (lower is better)
Translates to: LTDFPGHSHFLISDTNLVVKSYQ*LLIRAL
Trigger: CAGAGCCCTGATGAGAAGCCACTGGTAGCTCTTGAC...AACCAGATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGGCCTCGTCCGGGCCATaGCGTTGTTCTTCTTGGGTT +
Preference number: 4 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKASSGP*RCSSWV
Trigger: AACCCAAGAAGAACAACGTCATGGCCCGGACGAGGC...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCCATCTTTCAGCAGCTaGATGTTCAAATCTTGGTTG +
Preference number: 4 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPPSFSS*MFKSWL
Trigger: CAACCAAGATTTGAACATCCAGCTGCTGAAAGATGG...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGCCATCTTTCAGCAGCTaGATGTTCAAATCTTGGTTG +
Preference number: 4 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQPSFSS*MFKSWL
Trigger: CAACCAAGATTTGAACATCCAGCTGCTGAAAGATGG...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CAA 72 bp CATGGGCCTGTGGCCCCTGCAGATGCTTTCTCTGGCTaGCCTCCCTTGGCATTTTCTTATCTAATTAGGATC +
Preference number: 4 (lower is better)
Translates to: HGPVAPADAFSG*PPLAFSYLIRI
Trigger: GATCCTAATTAGATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAGGCCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR TCA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAATGTTCAAATCTTGGTTaGTCTGCTCGGCAGAGGAGT +
Preference number: 4 (lower is better)
Translates to: SYPYPLCIYHLMPLPASECSNLG*SARQRS
Trigger: ACTCCTCTGCCGAGCAGATCAACCAAGATTTGAACA...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGTGGATGTTCAAATCTTaGTTGATCTGCTCGGCAGAG +
Preference number: 4 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEWMFKS*LICSAE
Trigger: CTCTGCCGAGCAGATCAACCAAGATTTGAACATCCA...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
3UTR CAA 72 bp AGCCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTaGAAGAGCCTTTCTGGAAGCCTGGCTCCTGGACTT +
Preference number: 4 (lower is better)
Translates to: SHLAHCISLSLL*KSLSGSLAPGL
Trigger: AAGTCCAGGAGCCAGGCTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CAA 72 bp TCATACAGCCACTTGGCTCACTGTATTTCCTTAAGCTaGCTCTTGAAGAGCCTTTCTGGAAGCCTGGCTCCT +
Preference number: 4 (lower is better)
Translates to: SYSHLAHCISLS*LLKSLSGSLAP
Trigger: AGGAGCCAGGCTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGGCTGTATGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CCA 90 bp CTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCTGGTTCCATCTTTCAGCAGCTaGATGTTCAAATCTTGGTTG +
Preference number: 4 (lower is better)
Translates to: LTDFPGHSHFLISDTNLVPSFSS*MFKSWL
Trigger: CAACCAAGATTTGAACATCCAGCTGCTGAAAGATGG...AACCAGATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
3UTR CAA 72 bp CATACCATACCATACCATACCATATCATACAGCCACTaGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAG +
Preference number: 4 (lower is better)
Translates to: HTIPYHTISYSH*AHCISLSLLLK
Trigger: CTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGGCTGTATGATATGGTATGGTATGGTATGGTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCACCGGGCCAGCTCCCGTaGCTTCTCCTCCCGGGCGTC +
Preference number: 5 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAPGQLP*LLLPGV
Trigger: GACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCGG...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS TCA 90 bp GGCCAGCTCCCGTTGCTTCTCCTCCCGGGCGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGGATCCAGCGGCTGCATCTCCGAGTG +
Preference number: 5 (lower is better)
Translates to: GQLPLLLLPGVTVSV*DRGCGWIQRLHLRV
Trigger: CACTCGGAGATGCAGCCGCTGGATCCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS TCA 90 bp GGCCAGCTCCCGTTGCTTCTCCTCCCGGGCGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGGATCCTGGAACCGGTCGATCTCCTC +
Preference number: 5 (lower is better)
Translates to: GQLPLLLLPGVTVSV*DRGCGWILEPVDLL
Trigger: GAGGAGATCGACCGGTTCCAGGATCCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGACGCCCGGGAGGAGAAGCAACGGGAGCTGGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
CDS GCA 90 bp TCACAGTCTCGGTCTGAGATAGAGGCTGCGGCTGGATCCAGCGGCTaGATCTCCGAGTGCGCGGTGGGCACCTGGAACCGGTCGATCTCC +
Preference number: 5 (lower is better)
Translates to: SQSRSEIEAAAGSSG*ISECAVGTWNRSIS
Trigger: GGAGATCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTGGATCCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp GAGCTACAGCCTCAGCTTTCCTCCCTCAGACCAGACCAGCAGCAGAAGCAACAGCCGGGCCAGCTCCCGTaGCTTCTCCTCCCGGGCGTC +
Preference number: 5 (lower is better)
Translates to: ELQPQLSSLRPDQQQKQQPGQLP*LLLPGV
Trigger: GACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCGG...CTGTTGCTTCTGCTGCTGGTCTGGTCTGAGGGAGGAAAGCTGAGGCTGTAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp GACCAGTGGACCAGCAGGGTAGGGGTCTCTCCTGCTGCATCCCACCGGGCCCAGGTTGTTCTTCTTGGGTaGCTGGTTGACAGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: DQWTSRVGVSPAASHRAQVVLLG*LVDRAA
Trigger: GGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAAC...CTGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACCCTGCTGGTCCACTGGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS GCA 90 bp GGGACGACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTTaGTGGTTGACAGGGCTGCCCATGCTGCCGTTCTTCAGGGAACCC +
Preference number: 5 (lower is better)
Translates to: GTTSLVRAMTLFFLG*WLTGLPMLPFFREP
Trigger: GGGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CCA 90 bp ACGACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTTGCTaGTTGACAGGGCTGCCCATGCTGCCGTTCTTCAGGGAACCCTTC +
Preference number: 5 (lower is better)
Translates to: TTSLVRAMTLFFLGC*LTGLPMLPFFREPF
Trigger: GAAGGGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp GAAGAAACCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCATTCTTGGGTTGCTGGTaGACAGGGCTGCCCATGCTG +
Preference number: 5 (lower is better)
Translates to: EETWLGSSRSQGWGSVKAFLGCW*TGLPML
Trigger: CAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAA...TGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGGTTTCTTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp GACCAGTGGACCAGCAGGGTAGGGGTCTCTCCTGCTGCATCCCACCGGGCCCAGCTGGATGTTCAAATCTaGGTTGATCTCGGCAGAGGA +
Preference number: 5 (lower is better)
Translates to: DQWTSRVGVSPAASHRAQLDVQI*VDLGRG
Trigger: TCCTCTGCCGAGATCAACCAAGATTTGAACATCCAG...CTGGGCCCGGTGGGATGCAGCAGGAGAGACCCCTACCCTGCTGGTCCACTGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108050.2
CDS-3UTR CAA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGCCGGGCCAGCTCCCGTaGCTTCTCCTCCCGGGCGTC +
Preference number: 5 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKPGQLP*LLLPGV
Trigger: GACGCCCGGGAGGAGAAGCAACGGGAGCTGGCCCGG...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp ACTGTGTGCTCTCCTTGGACTTGGAAGCTGCAGGCTGCCAGCTTCCTACCCCTATTCTTGGGTTGCTGGTaGACAGGGCTGCCCATGCTG +
Preference number: 5 (lower is better)
Translates to: TVCSPWTWKLQAASFLPLFLGCW*TGLPML
Trigger: CAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAA...TAGGGGTAGGAAGCTGGCAGCCTGCAGCTTCCAAGTCCAAGGAGAGCACACAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCGTCCGGGCCATGACGTaGTTCTTCTTGGGTTGCTGG +
Preference number: 5 (lower is better)
Translates to: LSLLALVFSHGRATISLSVRAMT*FFLGCW
Trigger: CCAGCAACCCAAGAAGAACAACGTCATGGCCCGGAC...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTAATGTTCAAATCTTGGTaGATCTGCTCGGCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLMFKSW*ICSAEE
Trigger: CTCCTCTGCCGAGCAGATCAACCAAGATTTGAACAT...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCTGGCTGGGTAGCAGCCGCAGCCAAGGGTGGGGGAGTGTTAAGGCAGTATCTACTGGATGTTCAAATCTaGGTTGATCTGCTCGGCAGA +
Preference number: 5 (lower is better)
Translates to: PGWVAAAAKGGGVLRQYLLDVQI*VDLLGR
Trigger: TCTGCCGAGCAGATCAACCAAGATTTGAACATCCAG...TAGATACTGCCTTAACACTCCCCCACCCTTGGCTGCGGCTGCTACCCAGCCAGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGGTTGTTCTTCTTGGGTaGCTGGTTGACAGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEVVLLG*LVDRAA
Trigger: GGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAAC...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CTCACTGATTTCCCAGGCCACAGCCATTTCCTCATCTCGGACACCAATCTGGTTGTTGTTCTTCTTGGGTaGCTGGTTGACAGGGCTGCC +
Preference number: 5 (lower is better)
Translates to: LTDFPGHSHFLISDTNLVVVLLG*LVDRAA
Trigger: GGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAAC...AACCAGATTGGTGTCCGAGATGAGGAAATGGCTGTGGCCTGGGAAATCAGTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CTCTCTCTGCTTGCACTTGTCTTCAGCCATGGGAGAGCCACCATCTCACTGAGCATGACGTTGTTCTTCTaGGGTTGCTGGTTGACAGGG +
Preference number: 5 (lower is better)
Translates to: LSLLALVFSHGRATISLSMTLFF*GCWLTG
Trigger: CCCTGTCAACCAGCAACCCAAGAAGAACAACGTCAT...GCTCAGTGAGATGGTGGCTCTCCCATGGCTGAAGACAAGTGCAAGCAGAGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCAGATGGCCAGGCTGTGCTTTCAGTCCACTGCATTCTCATTCCCAAGCGGCCTCTGGATGTTCAAATCTaGGTTGATCTGCTCGGCAGA +
Preference number: 5 (lower is better)
Translates to: PDGQAVLSVHCILIPKRPLDVQI*VDLLGR
Trigger: TCTGCCGAGCAGATCAACCAAGATTTGAACATCCAG...AGGCCGCTTGGGAATGAGAATGCAGTGGACTGAAAGCACAGCCTGGCCATCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS CCA 90 bp GGACATGTCAAAGTCATCGTCGCTGTCTGTGTCAAGAGCTACCAGTaGCTTCTCATCAGGGCTCTGGTCCAGCGAGGAGTAGCCTTTATT +
Preference number: 5 (lower is better)
Translates to: GHVKVIVAVCVKSYQ*LLIRALVQRGVAFI
Trigger: AATAAAGGCTACTCCTCGCTGGACCAGAGCCCTGATGAGAAGCCACTGGTAGCTCTTGACACAGACAGCGACGATGACTTTGACATGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CTGTGGCCCCTGCAGATGCTTTCTCTGGCTTGCCTCCCTTGGCATTTTCTTATCATGACGTTGTTCTTCTaGGGTTGCTGGTTGACAGGG +
Preference number: 5 (lower is better)
Translates to: LWPLQMLSLACLPWHFLIMTLFF*GCWLTG
Trigger: CCCTGTCAACCAGCAACCCAAGAAGAACAACGTCAT...GATAAGAAAATGCCAAGGGAGGCAAGCCAGAGAAAGCATCTGCAGGGGCCACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp TCCTACCCCTACCCGCTATGTATATACCACCTAATGCCCTTGCCTGCTTCGGAAATGACGTTGTTCTTCTaGGGTTGCTGGTTGACAGGG +
Preference number: 5 (lower is better)
Translates to: SYPYPLCIYHLMPLPASEMTLFF*GCWLTG
Trigger: CCCTGTCAACCAGCAACCCAAGAAGAACAACGTCAT...TTCCGAAGCAGGCAAGGGCATTAGGTGGTATATACATAGCGGGTAGGGGTAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCACTTGGCTCACTGTATTTCCTTAAGCTTGCTCTTGAAGAGCCTTTCTGGAAGGTCCGGGCCATGACGTaGTTCTTCTTGGGTTGCTGG +
Preference number: 5 (lower is better)
Translates to: PLGSLYFLKLALEEPFWKVRAMT*FFLGCW
Trigger: CCAGCAACCCAAGAAGAACAACGTCATGGCCCGGAC...CTTCCAGAAAGGCTCTTCAAGAGCAAGCTTAAGGAAATACAGTGAGCCAAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS-3UTR CAA 90 bp CCCTTGGCTCTCAATCCCACAGGAAGTCAGAGGCAAAGGCAGCAGTCTAAAGAGATGTTCAAATCTTGGTaGATCTGCTCGGCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: PLALNPTGSQRQRQQSKEMFKSW*ICSAEE
Trigger: CTCCTCTGCCGAGCAGATCAACCAAGATTTGAACAT...CTCTTTAGACTGCTGCCTTTGCCTCTGACTTCCTGTGGGATTGAGAGCCAAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS GCA 72 bp GAGGCTGCGGCTGGATCCAGCGGCTGCATCTCCGAGTaGGCGGTGGGCACCTGGAACCGGTCGATCTCCTCC +
Preference number: 6 (lower is better)
Translates to: EAAAGSSGCISE*AVGTWNRSISS
Trigger: GGAGGAGATCGACCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTGGATCCAGCCGCAGCCTC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS GCA 72 bp CGGTCTGAGATAGAGGCTGCGGCTGGATCCAGCGGCTaGATCTCCGAGTGCGCGGTGGGCACCTGGAACCGG +
Preference number: 6 (lower is better)
Translates to: RSEIEAAAGSSG*ISECAVGTWNR
Trigger: CCGGTTCCAGGTGCCCACCGCGCACTCGGAGATGCAGCCGCTGGATCCAGCCGCAGCCTCTATCTCAGACCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS TCA 72 bp CCGTTGCTTCTCCTCCCGGGCGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGGATCCTGGAACCGGTC +
Preference number: 6 (lower is better)
Translates to: PLLLLPGVTVSV*DRGCGWILEPV
Trigger: GACCGGTTCCAGGATCCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGACGCCCGGGAGGAGAAGCAACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
CDS TCA 72 bp CCGTTGCTTCTCCTCCCGGGCGTCACAGTCTCGGTCTaGGATAGAGGCTGCGGCTGGATCCAGCGGCTGCAT +
Preference number: 6 (lower is better)
Translates to: PLLLLPGVTVSV*DRGCGWIQRLH
Trigger: ATGCAGCCGCTGGATCCAGCCGCAGCCTCTATCTCAGACCGAGACTGTGACGCCCGGGAGGAGAAGCAACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108052.10
CDS CAA 72 bp ACGACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTaGGGTTGCTGGTTGACAGGGCTGCCCATGCTGCCG +
Preference number: 6 (lower is better)
Translates to: TTSLVRAMTLFF*GCWLTGLPMLP
Trigger: CGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 90 bp ACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTTGCTGGTaGACAGGGCTGCCCATGCTGCCGTTCTTCAGGGAACCCTTCCGG +
Preference number: 6 (lower is better)
Translates to: TSLVRAMTLFFLGCW*TGLPMLPFFREPFR
Trigger: CCGGAAGGGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 90 bp AGGGACGACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTaGCTGGTTGACAGGGCTGCCCATGCTGCCGTTCTTCAGGGAACC +
Preference number: 6 (lower is better)
Translates to: RDDQPRPGHDVVLLG*LVDRAAHAAVLQGT
Trigger: GGTTCCCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGTCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS GCA 72 bp AGCCTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTTaGTGGTTGACAGGGCTGCCCATGCTGCCGTTCTTC +
Preference number: 6 (lower is better)
Translates to: SLVRAMTLFFLG*WLTGLPMLPFF
Trigger: GAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CCA 72 bp CTCGTCCGGGCCATGACGTTGTTCTTCTTGGGTTGCTaGTTGACAGGGCTGCCCATGCTGCCGTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: LVRAMTLFFLGC*LTGLPMLPFFR
Trigger: CCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 90 bp TTATTAGGGACGACCAGCCTCGTCCGGGCCATGACGTTGTTCTTCTaGGGTTGCTGGTTGACAGGGCTGCCCATGCTGCCGTTCTTCAGG +
Preference number: 6 (lower is better)
Translates to: LLGTTSLVRAMTLFF*GCWLTGLPMLPFFR
Trigger: CCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGTCCCTAATAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 72 bp GTCCGGGCCATGACGTTGTTCTTCTTGGGTTGCTGGTaGACAGGGCTGCCCATGCTGCCGTTCTTCAGGGAA +
Preference number: 6 (lower is better)
Translates to: VRAMTLFFLGCW*TGLPMLPFFRE
Trigger: TTCCCTGAAGAACGGCAGCATGGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 72 bp TTATTAGGGACGACCAGCCTCGTCCGGGCCATGACGTaGTTCTTCTTGGGTTGCTGGTTGACAGGGCTGCCC +
Preference number: 6 (lower is better)
Translates to: LLGTTSLVRAMT*FFLGCWLTGLP
Trigger: GGGCAGCCCTGTCAACCAGCAACCCAAGAAGAACAACGTCATGGCCCGGACGAGGCTGGTCGTCCCTAATAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CCA 72 bp AAAGTCATCGTCGCTGTCTGTGTCAAGAGCTACCAGTaGCTTCTCATCAGGGCTCTGGTCCAGCGAGGAGTA +
Preference number: 6 (lower is better)
Translates to: KVIVAVCVKSYQ*LLIRALVQRGV
Trigger: TACTCCTCGCTGGACCAGAGCCCTGATGAGAAGCCACTGGTAGCTCTTGACACAGACAGCGACGATGACTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000108049.9
ENSMUST00000108050.2
ENSMUST00000108052.10
CDS CAA 72 bp CCGGTAGCCATCTTTCAGCAGCTGGATGTTCAAATCTaGGTTGATCTGCTCGGCAGAGGAGTAGCCAGAGGA +
Preference number: 6 (lower is better)
Translates to: PVAIFQQLDVQI*VDLLGRGVARG
Trigger: TCCTCTGGCTACTCCTCTGCCGAGCAGATCAACCAAGATTTGAACATCCAGCTGCTGAAAGATGGCTACCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000108049.9
ENSMUST00000108052.10
CDS CAA 72 bp CCGGTAGCCATCTTTCAGCAGCTGGATGTTCAAATCTaGGTTGATCTCGGCAGAGGAGTAGCCAGAGGAAGA +
Preference number: 6 (lower is better)
Translates to: PVAIFQQLDVQI*VDLGRGVARGR
Trigger: TCTTCCTCTGGCTACTCCTCTGCCGAGATCAACCAAGATTTGAACATCCAGCTGCTGAAAGATGGCTACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108050.2