RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM217B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000070476

Ensembl transcript IDs: ENSMUST00000094251.11

Found 143 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCAGCTCACACTGTCTTCCACACTTCAGAGACAGGGACAGACACTaGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGCTTGAATCCC +
Preference number: 1 (lower is better)
Translates to: SSSHCLPHFRDRDRH*SWAVLAAWHCCLNP
Trigger: GGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCTGTCTCTGAAGTGTGGAAGACAGTGTGAGCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 90 bp AACATAAGCCCAACAGCTCACAGGTTCAGGGGCCTTCCTTTTGCGTaGAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGG +
Preference number: 1 (lower is better)
Translates to: NISPTAHRFRGLPFA*RPWRLSSPPKGCDR
Trigger: CCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTCACGCAAAAGGAAGGCCCCTGAACCTGTGAGCTGTTGGGCTTATGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 90 bp TTCAGAGACAGGGACAGACACTGGAGCTGGGCTGTGCTGGCTGCCTaGCACTGTTGCTTGAATCCCTTGTATCACGGACACATGGGTAAA +
Preference number: 1 (lower is better)
Translates to: FRDRDRHWSWAVLAA*HCCLNPLYHGHMGK
Trigger: TTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCTGTCTCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 90 bp AGGGACAGACACTGGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTaGTTGAATCCCTTGTATCACGGACACATGGGTAAATTTTTACCT +
Preference number: 1 (lower is better)
Translates to: RDRHWSWAVLAAWHC*LNPLYHGHMGKFLP
Trigger: AGGTAAAAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 90 bp CTAAAGGACCCACACAGGTGTGTAACAGAAAAGAAACCCTGTCAGTaGTGCTCTAGTGAGCATGCTACTCTAGTGAGCACTAGAGCTGGT +
Preference number: 1 (lower is better)
Translates to: LKDPHRCVTEKKPCQ*CSSEHATLVSTRAG
Trigger: ACCAGCTCTAGTGCTCACTAGAGTAGCATGCTCACTAGAGCAGCACTGACAGGGTTTCTTTTCTGTTACACACCTGTGTGGGTCCTTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 90 bp AAGGACCCACACAGGTGTGTAACAGAAAAGAAACCCTGTCAGTGCTaGTCTAGTGAGCATGCTACTCTAGTGAGCACTAGAGCTGGTATT +
Preference number: 1 (lower is better)
Translates to: KDPHRCVTEKKPCQC*SSEHATLVSTRAGI
Trigger: AATACCAGCTCTAGTGCTCACTAGAGTAGCATGCTCACTAGAGCAGCACTGACAGGGTTTCTTTTCTGTTACACACCTGTGTGGGTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 90 bp CCATCAGACAGCAGCAACAAAGGTTGGGCCGGTCATCTTTCTGTCTaGAAAAATCCACAAATGATGTTGACTTCAGTTAAGAGAACTCAG +
Preference number: 1 (lower is better)
Translates to: PSDSSNKGWAGHLSV*KNPQMMLTSVKRTQ
Trigger: CTGAGTTCTCTTAACTGAAGTCAACATCATTTGTGGATTTTTCCAGACAGAAAGATGACCGGCCCAACCTTTGTTGCTGCTGTCTGATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 90 bp ATGTGGACATTGCATCTGTGGACTGCCTTCAACATAAACGGATTTTaGTCACATGAAAAGGCACAAGACCTGCATTTAATAAATAACAGG +
Preference number: 1 (lower is better)
Translates to: MWTLHLWTAFNINGF*SHEKAQDLHLINNR
Trigger: CCTGTTATTTATTAAATGCAGGTCTTGTGCCTTTTCATGTGACCAAAATCCGTTTATGTTGAAGGCAGTCCACAGATGCAATGTCCACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 90 bp CCTAGTCAGCAACTCAACGACTTATATTTGAGTAATCCTACAAATTaGTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTT +
Preference number: 1 (lower is better)
Translates to: PSQQLNDLYLSNPTN*SWISQSLMCQGILF
Trigger: AAAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGATTACTCAAATATAAGTCGTTGAGTTGCTGACTAGG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCGGCACCCTCTGTCACTaGGGCTGGATACTCTGGTTT +
Preference number: 2 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILGTLCH*GWILWF
Trigger: AAACCAGAGTATCCAGCCTCAGTGACAGAGGGTGCC...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp TGGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGCTTGAATCCCTaGTATCACGGACACATGGGTAAATTTTTACCTATAGGGCCCTCG +
Preference number: 2 (lower is better)
Translates to: WSWAVLAAWHCCLNP*YHGHMGKFLPIGPS
Trigger: CGAGGGCCCTATAGGTAAAAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCACTTTTGAGGCAAGCTaGAGTAACCGAGAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILTFEAS*SNREPA
Trigger: AGCTGGCTCTCGGTTACTCCAGCTTGCCTCAAAAGT...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTCTGGGCTGTGCTGGCTaGCTGGCACTGTTGCTTGAA +
Preference number: 2 (lower is better)
Translates to: STRTINLGKEVNKVVLWALGCAG*LALLLE
Trigger: TTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAG...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTGGAAGGTCTGCACACTaGAGAAAACACCCCAGGCAG +
Preference number: 2 (lower is better)
Translates to: STRTINLGKEVNKVVLWAGRSAH*RKHPRQ
Trigger: CTGCCTGGGGTGTTTTCTTCAGTGTGCAGACCTTCC...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp GACAGACACTGGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGCTaGAATCCCTTGTATCACGGACACATGGGTAAATTTTTACCTATA +
Preference number: 2 (lower is better)
Translates to: DRHWSWAVLAAWHCC*NPLYHGHMGKFLPI
Trigger: TATAGGTAAAAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCGCTGTGCTGGCTGCCTaGCACTGTTGCTTGAATCCC +
Preference number: 2 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVAVLAA*HCCLNP
Trigger: GGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGC...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp GCAGCAACCAAGGAAGGTCTGCACACTGAAGAAAACACCCCAGGCAGAGAGGTCACAAGAGGATATGTATaGTCCCTAGTCAGCAACTCA +
Preference number: 2 (lower is better)
Translates to: AATKEGLHTEENTPGREVTRGYV*SLVSNS
Trigger: TGAGTTGCTGACTAGGGACCATACATATCCTCTTGT...GACCTCTCTGCCTGGGGTGTTTTCTTCAGTGTGCAGACCTTCCTTGGTTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCCCAGGCAGAGAGGTCTaGGATGCAGCTGAGGAATCC +
Preference number: 2 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVPGREV*DAAEES
Trigger: GGATTCCTCAGCTGCATCCCAGACCTCTCTGCCTGG...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp CTTCCCAGAAGGGCACCCTCTGTCACTGAGGCTGGATACTCTGGTTaGGCCTTGAACTTATTGAGTTTACAGTTCAGTGCCCAATGTTGT +
Preference number: 2 (lower is better)
Translates to: LPRRAPSVTEAGYSG*ALNLLSLQFSAQCC
Trigger: ACAACATTGGGCACTGAACTGTAAACTCAATAAGTTCAAGGCCAAACCAGAGTATCCAGCCTCAGTGACAGAGGGTGCCCTTCTGGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTGGAGCTGGGCTGTGCTaGCTGCCTGGCACTGTTGCT +
Preference number: 2 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFGAGLC*LPGTVA
Trigger: AGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCC...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTAACCGAGAGCCAGCTTaGGTTAGTTCAAGCTCATCA +
Preference number: 2 (lower is better)
Translates to: STRTINLGKEVNKVVLWANREPA*VSSSSS
Trigger: TGATGAGCTTGAACTAACTCAAGCTGGCTCTCGGTT...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTAACAACCACTGTCTGTaGAGCAGCAACCAAGGAAGG +
Preference number: 2 (lower is better)
Translates to: GALWKPLLFPTATCNLCSNNHCL*SSNQGR
Trigger: CCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTT...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCTTGAGATTTGGAAAATaGCCAAAGCCATCAGTGAAT +
Preference number: 2 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILLRFGK*PKPSVN
Trigger: ATTCACTGATGGCTTTGGTCATTTTCCAAATCTCAA...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTAACTGGAGCTGGGCTGTaGTGGCTGCCTGGCACTGTT +
Preference number: 2 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVTGAGL*WLPGTV
Trigger: AACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGT...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTGACAGGGACAGACACTaGAGCTGGGCTGTGCTGGCT +
Preference number: 2 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGDRDRH*SWAVLA
Trigger: AGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCTGTC...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCGGCTGCCTTTGCCTCTaGCAAGGAACTGCTTCAGAT +
Preference number: 2 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVGCLCL*QGTASD
Trigger: ATCTGAAGCAGTTCCTTGCCAGAGGCAAAGGCAGCC...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp GCAGCAACCAAGGAAGGTCTGCACACTGAAGAAAACACCCCAGGCAGAGAGGTCCCTACAAATTGCTCATaGATATCCCAAAGTCTAATG +
Preference number: 2 (lower is better)
Translates to: AATKEGLHTEENTPGREVPTNCS*ISQSLM
Trigger: CATTAGACTTTGGGATATCCATGAGCAATTTGTAGG...GACCTCTCTGCCTGGGGTGTTTTCTTCAGTGTGCAGACCTTCCTTGGTTGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp GGTTGGGCCGGTCATCTTTCTGTCTGGAAAAATCCACAAATGATGTaGACTTCAGTTAAGAGAACTCAGAACTGGGCTAGAGCACTACCC +
Preference number: 2 (lower is better)
Translates to: GWAGHLSVWKNPQMM*TSVKRTQNWARALP
Trigger: GGGTAGTGCTCTAGCCCAGTTCTGAGTTCTCTTAACTGAAGTCAACATCATTTGTGGATTTTTCCAGACAGAAAGATGACCGGCCCAACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp AGAAGGGCACCCTCTGTCACTGAGGCTGGATACTCTGGTTTGGCCTaGAACTTATTGAGTTTACAGTTCAGTGCCCAATGTTGTCTACTT +
Preference number: 2 (lower is better)
Translates to: RRAPSVTEAGYSGLA*NLLSLQFSAQCCLL
Trigger: AAGTAGACAACATTGGGCACTGAACTGTAAACTCAATAAGTTCAAGGCCAAACCAGAGTATCCAGCCTCAGTGACAGAGGGTGCCCTTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTCGATCCGGCTGCCTTTaGCTCTGGCAAGGAACTGCT +
Preference number: 2 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFRSGCL*LWQGTA
Trigger: AGCAGTTCCTTGCCAGAGGCAAAGGCAGCCGGATCG...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCAGTAATCCTACAAATTaGTCATGGATATCCCAAAGT +
Preference number: 2 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILSNPTN*SWISQS
Trigger: ACTTTGGGATATCCATGAGCAATTTGTAGGATTACT...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTAAGGAATTTCACCCTTaGCTGTCAGGGTCTAAAGGA +
Preference number: 2 (lower is better)
Translates to: STRTINLGKEVNKVVLWAKEFHP*LSGSKG
Trigger: TCCTTTAGACCCTGACAGGCAAGGGTGAAATTCCTT...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCAGCTCATCACCACACTaGAGACAGCCCCCATTGTTA +
Preference number: 2 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVSSSPH*RQPPLL
Trigger: TAACAATGGGGGCTGTCTCCAGTGTGGTGATGAGCT...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 90 bp TATCGTTCTCCCAACACAAGGTGCATACTCCGGCAAATGTGGACATaGCATCTGTGGACTGCCTTCAACATAAACGGATTTTGGTCACAT +
Preference number: 2 (lower is better)
Translates to: YRSPNTRCILRQMWT*HLWTAFNINGFWSH
Trigger: ATGTGACCAAAATCCGTTTATGTTGAAGGCAGTCCACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGGAGAACGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTGTGTATATGATGTCATaGTTACATTTACTGGCCCTG +
Preference number: 2 (lower is better)
Translates to: STRTINLGKEVNKVVLWAVYMMS*LHLLAL
Trigger: CAGGGCCAGTAAATGTAAGCATGACATCATATACAC...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTAAATGGGGTGACAGATaGGAGAAGGACAGCAGACAG +
Preference number: 2 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGKWGDR*EKDSRQ
Trigger: CTGTCTGCTGTCCTTCTCTCATCTGTCACCCCATTT...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTGCTGCCTGGCACTGTTaGTTGAATCCCTTGTATCAC +
Preference number: 2 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFAAWHC*LNPLYH
Trigger: GTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGC...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTACAACCAAGGAAGGTCTaGACACTGAAGAAAACACCC +
Preference number: 2 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVQPRKV*TLKKTP
Trigger: GGGTGTTTTCTTCAGTGTGCAGACCTTCCTTGGTTG...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTAGCAGACAGAAACTCTaGTTGAGGGGTTTATGCAAA +
Preference number: 2 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGSRQKL*LRGLCK
Trigger: TTTGCATAAACCCCTCAAGCAGAGTTTCTGTCTGCT...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR GCA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTAACACTAGAATCACCATaGCTAGAACAAAGGATGAAG +
Preference number: 2 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVTLESP*LEQRMK
Trigger: CTTCATCCTTTGTTCTAGGCATGGTGATTCTAGTGT...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR TCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTTCTAAACACAGAACATaGATTCTAGTCCCTAGATCA +
Preference number: 2 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGSKHRT*ILVPRS
Trigger: TGATCTAGGGACTAGAATTCATGTTCTGTGTTTAGA...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTGGTCATCTTTCTGTCTaGAAAAATCCACAAATGATG +
Preference number: 2 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFGHLSV*KNPQMM
Trigger: CATCATTTGTGGATTTTTCCAGACAGAAAGATGACC...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp CACTGTCTTCCACACTTCAGAGACAGGGACAGACACTaGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGC +
Preference number: 3 (lower is better)
Translates to: HCLPHFRDRDRH*SWAVLAAWHCC
Trigger: GCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCTGTCTCTGAAGTGTGGAAGACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp CCAACAGCTCACAGGTTCAGGGGCCTTCCTTTTGCGTaGAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGC +
Preference number: 3 (lower is better)
Translates to: PTAHRFRGLPFA*RPWRLSSPPKG
Trigger: GCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTCACGCAAAAGGAAGGCCCCTGAACCTGTGAGCTGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp CTTCCACACTTCAGAGACAGGGACAGACACTGGAGCTaGGCTGTGCTGGCTGCCTGGCACTGTTGCTTGAAT +
Preference number: 3 (lower is better)
Translates to: LPHFRDRDRHWS*AVLAAWHCCLN
Trigger: ATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCAGTGTCTGTCCCTGTCTCTGAAGTGTGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 72 bp GAGGGAGCAGGGTGGTATCGTTCTCCCAACACAAGGTaGATACTCCGGCAAATGTGGACATTGCATCTGTGG +
Preference number: 3 (lower is better)
Translates to: EGAGWYRSPNTR*ILRQMWTLHLW
Trigger: CCACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGGAGAACGATACCACCCTGCTCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 72 bp AAGCCCAACAGCTCACAGGTTCAGGGGCCTTCCTTTTaGGTGAAGACCATGGCGTCTGTCTTCTCCTCCAAA +
Preference number: 3 (lower is better)
Translates to: KPNSSQVQGPSF*VKTMASVFSSK
Trigger: TTTGGAGGAGAAGACAGACGCCATGGTCTTCACGCAAAAGGAAGGCCCCTGAACCTGTGAGCTGTTGGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp CCCCACCATGGGAGGAGAGGAAGCCACAGCCAGATAAGAACACTCAGGATAGTATGGAGACAGCCCCCATaGTTACACATCTGCAGGTCT +
Preference number: 3 (lower is better)
Translates to: PHHGRRGSHSQIRTLRIVWRQPP*LHICRS
Trigger: AGACCTGCAGATGTGTAACAATGGGGGCTGTCTCCA...TACTATCCTGAGTGTTCTTATCTGGCTGTGGCTTCCTCTCCTCCCATGGTGGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTGCGATCCGGCTGCCTTaGCCTCTGGCAAGGAACTGC +
Preference number: 3 (lower is better)
Translates to: GALWKPLLFPTATCNLCSAIRLP*PLARNC
Trigger: GCAGTTCCTTGCCAGAGGCAAAGGCAGCCGGATCGC...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp GGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGCTTaGATCCCTTGTATCACGGACACATGGGTAAATTTT +
Preference number: 3 (lower is better)
Translates to: GAGLCWLPGTVA*IPCITDTWVNF
Trigger: AAAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 72 bp AATAAGGGAAGTTCCAGTCATGCTGCAAATAGTCTGTaGTCCAAGGAGAAGGGAAGTGGACCCAGGGCCTCC +
Preference number: 3 (lower is better)
Translates to: NKGSSSHAANSL*SKEKGSGPRAS
Trigger: GGAGGCCCTGGGTCCACTTCCCTTCTCCTTGGAGCACAGACTATTTGCAGCATGACTGGAACTTCCCTTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCTGTTGCTTGAATCCCTaGTATCACGGACACATGGGT +
Preference number: 3 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILCCLNP*YHGHMG
Trigger: ACCCATGTGTCCGTGATACAAGGGATTCAAGCAACA...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp TGGTTTAAACGGGAGGGCCTTTTAACCATCCCTGAGTaGGAAGAACTTCCCAGAAGGGCACCCTCTGTCACT +
Preference number: 3 (lower is better)
Translates to: WFKREGLLTIPE*EELPRRAPSVT
Trigger: AGTGACAGAGGGTGCCCTTCTGGGAAGTTCTTCTCACTCAGGGATGGTTAAAAGGCCCTCCCGTTTAAACCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp ACTTTTGAGGCAAGCTGGAGTAACCGAGAGCCAGCTTaGGTTAGTTCAAGCTCATCACCACACTGGAGACAG +
Preference number: 3 (lower is better)
Translates to: TFEASWSNREPA*VSSSSSPHWRQ
Trigger: CTGTCTCCAGTGTGGTGATGAGCTTGAACTAACTCAAGCTGGCTCTCGGTTACTCCAGCTTGCCTCAAAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp GTGAGAAGAACTTCCCAGAAGGGCACCCTCTGTCACTaGGGCTGGATACTCTGGTTTGGCCTTGAACTTATT +
Preference number: 3 (lower is better)
Translates to: VRRTSQKGTLCH*GWILWFGLELI
Trigger: AATAAGTTCAAGGCCAAACCAGAGTATCCAGCCTCAGTGACAGAGGGTGCCCTTCTGGGAAGTTCTTCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp AAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTaGCAGGCCACATACTCTATGACCTTCAAGTTGGTT +
Preference number: 3 (lower is better)
Translates to: KTMASVFSSKGL*QATYSMTFKLV
Trigger: AACCAACTTGAAGGTCATAGAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTGCCTGGCACTGTTGCTaGAATCCCTTGTATCACGGA +
Preference number: 3 (lower is better)
Translates to: GALWKPLLFPTATCNLCSAWHCC*NPLYHG
Trigger: TCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGC...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCTACTCTGGTTTGGCCTaGAACTTATTGAGTTTACAG +
Preference number: 3 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILYSGLA*NLLSLQ
Trigger: CTGTAAACTCAATAAGTTCAAGGCCAAACCAGAGTA...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp TCTCCTCCAAAGGGCTGTGACAGGCCACATACTCTATaGCCTTCAAGTTGGTTACAAACCTTCAGCCCCTTT +
Preference number: 3 (lower is better)
Translates to: SPPKGCDRPHTL*PSSWLQTFSPF
Trigger: AAAGGGGCTGAAGGTTTGTAACCAACTTGAAGGTCATAGAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp CGTTCTCCCAACACAAGGTGCATACTCCGGCAAATGTaGACATTGCATCTGTGGACTGCCTTCAACATAAAC +
Preference number: 3 (lower is better)
Translates to: RSPNTRCILRQM*TLHLWTAFNIN
Trigger: GTTTATGTTGAAGGCAGTCCACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGGAGAACG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp CTAAACTCATCTCAGTCACAGACACCAGGGGCCCTGTaGAAGCCATTGTTATTTCCAACTGCAACATGTAAC +
Preference number: 3 (lower is better)
Translates to: LNSSQSQTPGAL*KPLLFPTATCN
Trigger: GTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCCTGGTGTCTGTGACTGAGATGAGTTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTAGACAGAAACTCTGCTaGAGGGGTTTATGCAAAAGC +
Preference number: 3 (lower is better)
Translates to: GALWKPLLFPTATCNLCSRQKLC*RGLCKS
Trigger: GCTTTTGCATAAACCCCTCAAGCAGAGTTTCTGTCT...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTCATGAGTCACTGTCTTaGCATTCCTTAGTTGTGACA +
Preference number: 3 (lower is better)
Translates to: STRTINLGKEVNKVVLWAHESLS*HSLVVT
Trigger: TGTCACAACTAAGGAATGCAAAGACAGTGACTCATG...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp TGCTTTGGGCTTCTAGGGCTGTCTAAACACAGAACATaGATTCTAGTCCCTAGATCAGGAACCAAGTTCGGT +
Preference number: 3 (lower is better)
Translates to: CFGLLGLSKHRT*ILVPRSGTKFG
Trigger: ACCGAACTTGGTTCCTGATCTAGGGACTAGAATTCATGTTCTGTGTTTAGACAGCCCTAGAAGCCCAAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp AACCAAGTTCGGTTAAGTGTGCTGGGAACGAATGCATaGGTCACTGTCTTTGCATTCCTTAGTTGTGACAGT +
Preference number: 3 (lower is better)
Translates to: NQVRLSVLGTNA*VTVFAFLSCDS
Trigger: ACTGTCACAACTAAGGAATGCAAAGACAGTGACTCATGCATTCGTTCCCAGCACACTTAACCGAACTTGGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp AGCAGCAACAAAGGTTGGGCCGGTCATCTTTCTGTCTaGAAAAATCCACAAATGATGTTGACTTCAGTTAAG +
Preference number: 3 (lower is better)
Translates to: SSNKGWAGHLSV*KNPQMMLTSVK
Trigger: CTTAACTGAAGTCAACATCATTTGTGGATTTTTCCAGACAGAAAGATGACCGGCCCAACCTTTGTTGCTGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 72 bp TCAAATAACTACACTCAACGTGACTGTAACAAACTGTaGTGCTCAATAGCACCCAGATCCAATAACACTGCT +
Preference number: 3 (lower is better)
Translates to: SNNYTQRDCNKL*CSIAPRSNNTA
Trigger: AGCAGTGTTATTGGATCTGGGTGCTATTGAGCAGCACAGTTTGTTACAGTCACGTTGAGTGTAGTTATTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR-3UTR CAA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTAACCCTCAAAATAGAATaGCATGAGCTCCCTAACTGG +
Preference number: 3 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVTLKIE*HELPNW
Trigger: CCAGTTAGGGAGCTCATGCAATTCTATTTTGAGGGT...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR TCA 72 bp GTATGGTCCCTAGTCAGCAACTCAACGACTTATATTTaGGTAATCCTACAAATTGCTCATGGATATCCCAAA +
Preference number: 3 (lower is better)
Translates to: VWSLVSNSTTYI*VILQIAHGYPK
Trigger: TTTGGGATATCCATGAGCAATTTGTAGGATTACTCAAATATAAGTCGTTGAGTTGCTGACTAGGGACCATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR GCA 72 bp CAACTCAACGACTTATATTTGAGTAATCCTACAAATTaGTCATGGATATCCCAAAGTCTAATGTGCCAAGGC +
Preference number: 3 (lower is better)
Translates to: QLNDLYLSNPTN*SWISQSLMCQG
Trigger: GCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGATTACTCAAATATAAGTCGTTGAGTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CCA 72 bp AACGACTTATATTTGAGTAATCCTACAAATTGCTCATaGATATCCCAAAGTCTAATGTGCCAAGGCATTCTT +
Preference number: 3 (lower is better)
Translates to: NDLYLSNPTNCS*ISQSLMCQGIL
Trigger: AAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGATTACTCAAATATAAGTCGTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp GCAAAAGCAAAAGGCGGTGAGCCAGCAGGGCCTCTCTTCCTCCACACACTAGGGTCTGGGAACACAGCCTaGGTCGGCCAGGCCCATCCA +
Preference number: 4 (lower is better)
Translates to: AKAKGGEPAGPLFLHTLGSGNTA*VGQAHP
Trigger: TGGATGGGCCTGGCCGACCCAGGCTGTGTTCCCAGA...CCCTAGTGTGTGGAGGAAGAGAGGCCCTGCTGGCTCACCGCCTTTTGCTTTTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCGGTTTGTCTGGACTCTaGCTGGCTCAGCTCTGGGTG +
Preference number: 4 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILGLSGL*LAQLWV
Trigger: CACCCAGAGCTGAGCCAGGCAGAGTCCAGACAAACC...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCAGCTGGGAGGAGACGTaGGGTCCTTGTGATCCACTC +
Preference number: 4 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILSWEET*GPCDPL
Trigger: GAGTGGATCACAAGGACCCCACGTCTCCTCCCAGCT...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp GCAAAAGCAAAAGGCGGTGAGCCAGCAGGGCCTCTCTTCCTCCACACACTAGGGTCTGAGGTTGAGCTCTaGAGGCGTGAATGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: AKAKGGEPAGPLFLHTLGSEVEL*RREWRR
Trigger: CCTTCTCCATTCACGCCTCCAGAGCTCAACCTCAGA...CCCTAGTGTGTGGAGGAAGAGAGGCCCTGCTGGCTCACCGCCTTTTGCTTTTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp GCAGCAACCAAGGAAGGTCTGCACACTGAAGAAAACACCCCAGGCAGAGAGGTCTGGGAACGGTTTCCATaGGTTTCTCTGCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: AATKEGLHTEENTPGREVWERFP*VSLLLA
Trigger: AGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCA...GACCTCTCTGCCTGGGGTGTTTTCTTCAGTGTGCAGACCTTCCTTGGTTGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCCATGAGTTTCTCTGCTaGTGGCTGGGAGATCCCAAG +
Preference number: 4 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILHEFLC*WLGDPK
Trigger: CTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATG...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GAAGACCATGGCGTCTGTCTTCTCCTCCAAAGGGCTGTGACAGGCCACATACTCTTCCATGAGTTTCTCTaGTGCTGGCTGGGAGATCCC +
Preference number: 4 (lower is better)
Translates to: EDHGVCLLLQRAVTGHILFHEFL*CWLGDP
Trigger: GGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAA...GAGTATGTGGCCTGTCACAGCCCTTTGGAGGAGAAGACAGACGCCATGGTCTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTCCTGATACCTGGAGCTaGGCGCAGCCTGCTCCTGTA +
Preference number: 4 (lower is better)
Translates to: STRTINLGKEVNKVVLWAPDTWS*AQPAPV
Trigger: TACAGGAGCAGGCTGCGCTCAGCTCCAGGTATCAGG...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp GCAGCAACCAAGGAAGGTCTGCACACTGAAGAAAACACCCCAGGCAGAGAGGTCCTCACTCCTGCACTCTaGGTTCATGACAACAGCCAT +
Preference number: 4 (lower is better)
Translates to: AATKEGLHTEENTPGREVLTPAL*VHDNSH
Trigger: ATGGCTGTTGTCATGAACTCAGAGTGCAGGAGTGAG...GACCTCTCTGCCTGGGGTGTTTTCTTCAGTGTGCAGACCTTCCTTGGTTGCTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTCTTCCATTGCAGGGTTaGCCTCGGCGCAGGGTGGAG +
Preference number: 4 (lower is better)
Translates to: GALWKPLLFPTATCNLCSLPLQG*PRRRVE
Trigger: CTCCACCCTGCGCCGAGGGCAACCCTGCAATGGAAG...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp CCCCACCATGGGAGGAGAGGAAGCCACAGCCAGATAAGAACACTCAGGATAGTATGCCTGGCTCAGCTCTaGGTGAAGACTGAAGGAAAC +
Preference number: 4 (lower is better)
Translates to: PHHGRRGSHSQIRTLRIVCLAQL*VKTEGN
Trigger: GTTTCCTTCAGTCTTCACCCAGAGCTGAGCCAGGCA...TACTATCCTGAGTGTTCTTATCTGGCTGTGGCTTCCTCTCCTCCCATGGTGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp TGGAGCTGGGCTGTGCTGGCTGCCTGGCACTGTTGCTaGAATCCCTTGTATCACGGACACATGGGTAAATTT +
Preference number: 4 (lower is better)
Translates to: WSWAVLAAWHCC*NPLYHGHMGKF
Trigger: AAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGCCCAGCTCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp TCAACTCGGACAATCAACCTGGGCAAAGAGGTAAACAAAGTCGTGCTTTGGGCTTGGCTCAGCTCTGGGTaGAGACTGAAGGAAACCGGG +
Preference number: 4 (lower is better)
Translates to: STRTINLGKEVNKVVLWAWLSSG*RLKETG
Trigger: CCCGGTTTCCTTCAGTCTTCACCCAGAGCTGAGCCA...AGCCCAAAGCACGACTTTGTTTACCTCTTTGCCCAGGTTGATTGTCCGAGTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp CCCCACCATGGGAGGAGAGGAAGCCACAGCCAGATAAGAACACTCAGGATAGTATGCACTCTGAGTTCATaGCAACAGCCATATCCCGGA +
Preference number: 4 (lower is better)
Translates to: PHHGRRGSHSQIRTLRIVCTLSS*QQPYPG
Trigger: TCCGGGATATGGCTGTTGTCATGAACTCAGAGTGCA...TACTATCCTGAGTGTTCTTATCTGGCTGTGGCTTCCTCTCCTCCCATGGTGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GCAAAAGCAAAAGGCGGTGAGCCAGCAGGGCCTCTCTTCCTCCACACACTAGGGAGCCAGCATTTATACTaGTTTTCTGATGACAGTCCC +
Preference number: 4 (lower is better)
Translates to: AKAKGGEPAGPLFLHTLGSQHLY*FSDDSP
Trigger: GGGACTGTCATCAGAAAAGCAGTATAAATGCTGGCT...CCCTAGTGTGTGGAGGAAGAGAGGCCCTGCTGGCTCACCGCCTTTTGCTTTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp TCGTTCTCCCAACACAAGGTGCATACTCCGGCAAATGTGGACATTGCATCTGTGCCTTGTGATCCACTCTaGCTTTTCCCCGAAGTAGTC +
Preference number: 4 (lower is better)
Translates to: SFSQHKVHTPANVDIASVPCDPL*LFPEVV
Trigger: GACTACTTCGGGGAAAAGGCAGAGTGGATCACAAGG...CACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGGAGAACGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTCAGGGTAGGTTTGTCTaGACTCTGCCTGGCTCAGCT +
Preference number: 4 (lower is better)
Translates to: GALWKPLLFPTATCNLCSQGRFV*TLPGSA
Trigger: AGCTGAGCCAGGCAGAGTCCAGACAAACCTACCCTG...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTTCCCAAGGAATCCCGTaGCCCGAGGCAGGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGSQGIP*PEAGPH
Trigger: GTGAGGCCCTGCCTCGGGCCACGGGATTCCTTGGGA...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp GGGGCCCTGTGGAAGCCATTGTTATTTCCAACTGCAACATGTAACCTTTGTTCTGCTCTGGGTGAAGACTaGAGGAAACCGGGTCTATCT +
Preference number: 4 (lower is better)
Translates to: GALWKPLLFPTATCNLCSALGED*RKPGLS
Trigger: AGATAGACCCGGTTTCCTTCAGTCTTCACCCAGAGC...AGAACAAAGGTTACATGTTGCAGTTGGAAATAACAATGGCTTCCACAGGGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp GCAAAAGCAAAAGGCGGTGAGCCAGCAGGGCCTCTCTTCCTCCACACACTAGGGAACTTATATGTGCTTTaGTTGGCTCCATTTGTTTTG +
Preference number: 4 (lower is better)
Translates to: AKAKGGEPAGPLFLHTLGNLYVL*LAPFVL
Trigger: CAAAACAAATGGAGCCAAGCAAAGCACATATAAGTT...CCCTAGTGTGTGGAGGAAGAGAGGCCCTGCTGGCTCACCGCCTTTTGCTTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTAGGCTGCTCCTCAGCTaGGAGGAGACGTGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGRLLLS*EETWGP
Trigger: AGGACCCCACGTCTCCTCCCAGCTGAGGAGCAGCCT...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp CCCCACCATGGGAGGAGAGGAAGCCACAGCCAGATAAGAACACTCAGGATAGTATACTTGATTCCAAGATaGGCCAGCATTTATACTGCT +
Preference number: 4 (lower is better)
Translates to: PHHGRRGSHSQIRTLRIVYLIPR*ASIYTA
Trigger: AGCAGTATAAATGCTGGCTCATCTTGGAATCAAGTA...TACTATCCTGAGTGTTCTTATCTGGCTGTGGCTTCCTCTCCTCCCATGGTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp TCGTTCTCCCAACACAAGGTGCATACTCCGGCAAATGTGGACATTGCATCTGTGATGATCTCCATGGAGTaGAAGTCAAGGAACAGCTTG +
Preference number: 4 (lower is better)
Translates to: SFSQHKVHTPANVDIASVMISME*KSRNSL
Trigger: CAAGCTGTTCCTTGACTTCCACTCCATGGAGATCAT...CACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGGAGAACGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTGACGTGGGGTCCTTGTaGTCCACTCTGCCTTTTCCC +
Preference number: 4 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGDVGSL*STLPFP
Trigger: GGGAAAAGGCAGAGTGGATCACAAGGACCCCACGTC...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTAGATCCCAAGGAGGCTaGTCCTCAGCTGGGAGGAGA +
Preference number: 4 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFRSQGG*SSAGRR
Trigger: TCTCCTCCCAGCTGAGGAGCAGCCTCCTTGGGATCT...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTTTCTCTGCTGCTGGCTaGGAGATCCCAAGGAGGCTG +
Preference number: 4 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGFSAAG*EIPRRL
Trigger: CAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAA...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp GCTGTGCTGGCTGCCTGGCACTGTTGCTTGAATCCCTaGTATCACGGACACATGGGTAAATTTTTACCTATA +
Preference number: 4 (lower is better)
Translates to: AVLAAWHCCLNP*YHGHMGKFLPI
Trigger: TATAGGTAAAAATTTACCCATGTGTCCGTGATACAAGGGATTCAAGCAACAGTGCCAGGCAGCCAGCACAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp CCCAACACAAGGTGCATACTCCGGCAAATGTGGACATaGCATCTGTGGACTGCCTTCAACATAAACGGATTT +
Preference number: 4 (lower is better)
Translates to: PNTRCILRQMWT*HLWTAFNINGF
Trigger: AAATCCGTTTATGTTGAAGGCAGTCCACAGATGCAATGTCCACATTTGCCGGAGTATGCACCTTGTGTTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp CCCTCTGTCACTGAGGCTGGATACTCTGGTTTGGCCTaGAACTTATTGAGTTTACAGTTCAGTGCCCAATGT +
Preference number: 4 (lower is better)
Translates to: PSVTEAGYSGLA*NLLSLQFSAQC
Trigger: ACATTGGGCACTGAACTGTAAACTCAATAAGTTCAAGGCCAAACCAGAGTATCCAGCCTCAGTGACAGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp AGTTCAAGCTCATCACCACACTGGAGACAGCCCCCATaGTTACACATCTGCAGGTCTTTACAATTCTTTACC +
Preference number: 4 (lower is better)
Translates to: SSSSSPHWRQPP*LHICRSLQFFT
Trigger: GGTAAAGAATTGTAAAGACCTGCAGATGTGTAACAATGGGGGCTGTCTCCAGTGTGGTGATGAGCTTGAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp ACCAAACACACAGCAGTACAACAGCAAATGAACATGCTGAATGTGTTTATAGGTTGGGGATTCGGATGTTaGCGTTGGCTTCCATTGCAG +
Preference number: 4 (lower is better)
Translates to: TKHTAVQQQMNMLNVFIGWGFGC*RWLPLQ
Trigger: CTGCAATGGAAGCCAACGGCAACATCCGAATCCCCA...ACCTATAAACACATTCAGCATGTTCATTTGCTGTTGTACTGCTGTGTGTTTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCTTTGAATGCTGTACTTaGTTCCAAGATGAGCCAGCA +
Preference number: 4 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVFECCT*FQDEPA
Trigger: TGCTGGCTCATCTTGGAATCAAGTACAGCATTCAAA...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCCTTAGGGCCCTTACTTaGTTTCTTCTTCTTCTCCAT +
Preference number: 4 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVLRALT*FLLLLH
Trigger: ATGGAGAAGAAGAAGAAATCAAGTAAGGGCCCTAAG...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR GCA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTAAGTCAAGGAACAGCTTaGTTCCAGAGGCAGCCTGAT +
Preference number: 4 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVSQGTA*FQRQPD
Trigger: ATCAGGCTGCCTCTGGAAGCAAGCTGTTCCTTGACT...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTCCCCGAAGTAGTCTTTaGATGCTGTACTTGATTCCA +
Preference number: 4 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFPRSSL*MLYLIP
Trigger: TGGAATCAAGTACAGCATTCAAAGACTACTTCGGGG...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR TCA 90 bp AATGAACATGCTGAATGTGTTTATAGGTCACTTTACTACAGCCGTCTACACGTATGCAGCCATTCTAGTTaGAGAAGTCTGTCTATGTAC +
Preference number: 4 (lower is better)
Translates to: NEHAECVYRSLYYSRLHVCSHSS*RSLSMY
Trigger: GTACATAGACAGACTTCTTCAACTAGAATGGCTGCA...TACGTGTAGACGGCTGTAGTAAAGTGACCTATAAACACATTCAGCATGTTCATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
3UTR CAA 72 bp GGTCATCTTTCTGTCTGGAAAAATCCACAAATGATGTaGACTTCAGTTAAGAGAACTCAGAACTGGGCTAGA +
Preference number: 4 (lower is better)
Translates to: GHLSVWKNPQMM*TSVKRTQNWAR
Trigger: TCTAGCCCAGTTCTGAGTTCTCTTAACTGAAGTCAACATCATTTGTGGATTTTTCCAGACAGAAAGATGACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 90 bp CAGGTCCACGTGCGCCTGTGTCCTGGAGGCCCTATGGGAATCCACTaGGTCCAGAAGCACTGCAGACTGCCTGGGGATTCGGATGTTGCC +
Preference number: 5 (lower is better)
Translates to: QVHVRLCPGGPMGIH*VQKHCRLPGDSDVA
Trigger: GGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCCAGGACACAGGCGCACGTGGACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 90 bp TTCTCTGCTGCTGGCTGGGAGATCCCAAGGAGGCTGCTCCTCAGCTaGGAGGAGACGTGGGGTCCTTGTGATCCACTCTGCCTTTTCCCC +
Preference number: 5 (lower is better)
Translates to: FSAAGWEIPRRLLLS*EETWGPCDPLCLFP
Trigger: GGGGAAAAGGCAGAGTGGATCACAAGGACCCCACGTCTCCTCCCAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 90 bp CTGGAGGCCCTATGGGAATCCACTGGGTCCAGAAGCACTGCAGACTaGCTGGGGATTCGGATGTTGCCGTTGGCTTCCATTGCAGGGTTG +
Preference number: 5 (lower is better)
Translates to: LEALWESTGSRSTAD*LGIRMLPLASIAGL
Trigger: CAACCCTGCAATGGAAGCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 90 bp CTGTGTCCTGGAGGCCCTATGGGAATCCACTGGGTCCAGAAGCACTaGAGACTGCCTGGGGATTCGGATGTTGCCGTTGGCTTCCATTGC +
Preference number: 5 (lower is better)
Translates to: LCPGGPMGIHWVQKH*RLPGDSDVAVGFHC
Trigger: GCAATGGAAGCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCCAGGACACAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 90 bp AGGCCCTATGGGAATCCACTGGGTCCAGAAGCACTGCAGACTGCCTaGGGATTCGGATGTTGCCGTTGGCTTCCATTGCAGGGTTGCCCT +
Preference number: 5 (lower is better)
Translates to: RPYGNPLGPEALQTA*GFGCCRWLPLQGCP
Trigger: AGGGCAACCCTGCAATGGAAGCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 90 bp CTGTATTCCTTCCGTGGGAACGGTTTCCATGAGTTTCTCTGCTGCTaGCTGGGAGATCCCAAGGAGGCTGCTCCTCAGCTGGGAGGAGAC +
Preference number: 5 (lower is better)
Translates to: LYSFRGNGFHEFLCC*LGDPKEAAPQLGGD
Trigger: GTCTCCTCCCAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAAGGAATACAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 90 bp TCCATGGAGTGGAAGTCAAGGAACAGCTTGCTTCCAGAGGCAGCCTaGTACCTGGAGCTGAGCGCAGCCTGCTCCTGTATTCCTTCCGTG +
Preference number: 5 (lower is better)
Translates to: SMEWKSRNSLLPEAA*YLELSAACSCIPSV
Trigger: CACGGAAGGAATACAGGAGCAGGCTGCGCTCAGCTCCAGGTATCAGGCTGCCTCTGGAAGCAAGCTGTTCCTTGACTTCCACTCCATGGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 90 bp CGGGCCTTCTCACACTGCACAGTCTGGACTTGCAGCCATTCTAGTTaGAGAAGTCTGTCTATGTACTTCCCAAGGAATCCCGTGGCCCGA +
Preference number: 5 (lower is better)
Translates to: RAFSHCTVWTCSHSS*RSLSMYFPRNPVAR
Trigger: TCGGGCCACGGGATTCCTTGGGAAGTACATAGACAGACTTCTTCAACTAGAATGGCTGCAAGTCCAGACTGTGCAGTGTGAGAAGGCCCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 90 bp CCTGGGTCGGCCAGGCCCATCCACAGAGTTAGGCAAAGTCTCAAATaGATAGTAGGATGGGTGGGCTTCTTCGTGGCGAAAACCTTTCTT +
Preference number: 5 (lower is better)
Translates to: PGSARPIHRVRQSLK*IVGWVGFFVAKTFL
Trigger: AAGAAAGGTTTTCGCCACGAAGAAGCCCACCCATCCTACTATGCATTTGAGACTTTGCCTAACTCTGTGGATGGGCCTGGCCGACCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CAA 90 bp ACTACAGTCCTTAATAAACAACCACTGTCTGTGAAGCAGCAACCAAGGAAGGTCGGGGATGGTAAGGGTTaGGACAGGGCACTGGTAAGG +
Preference number: 5 (lower is better)
Translates to: TTVLNKQPLSVKQQPRKVGDGKG*DRALVR
Trigger: CCTTACCAGTGCCCTGTCCAAACCCTTACCATCCCC...GACCTTCCTTGGTTGCTGCTTCACAGACAGTGGTTGTTTATTAAGGACTGTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS-3UTR CAA 90 bp TCCTACAAATTGCTCATGGATATCCCAAAGTCTAATGTGCCAAGGCATTCTTTTGAGAAGGGCCTGACTTaGAAATCCCTTCTGGGGATG +
Preference number: 5 (lower is better)
Translates to: SYKLLMDIPKSNVPRHSFEKGLT*KSLLGM
Trigger: CATCCCCAGAAGGGATTTCAAAGTCAGGCCCTTCTC...AAAAGAATGCCTTGGCACATTAGACTTTGGGATATCCATGAGCAATTTGTAGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp GGATTCGGATGTTGCCGTTGGCTTCCATTGCAGGGTTaGCCTCGGCGCAGGGTGGAGCACGGGGCTGAAGCT +
Preference number: 6 (lower is better)
Translates to: GFGCCRWLPLQG*PRRRVEHGAEA
Trigger: AGCTTCAGCCCCGTGCTCCACCCTGCGCCGAGGGCAACCCTGCAATGGAAGCCAACGGCAACATCCGAATCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp GCTGGCTGGGAGATCCCAAGGAGGCTGCTCCTCAGCTaGGAGGAGACGTGGGGTCCTTGTGATCCACTCTGC +
Preference number: 6 (lower is better)
Translates to: AGWEIPRRLLLS*EETWGPCDPLC
Trigger: GCAGAGTGGATCACAAGGACCCCACGTCTCCTCCCAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp GTTTCTCTGCTGCTGGCTGGGAGATCCCAAGGAGGCTaGTCCTCAGCTGGGAGGAGACGTGGGGTCCTTGTG +
Preference number: 6 (lower is better)
Translates to: VSLLLAGRSQGG*SSAGRRRGVLV
Trigger: CACAAGGACCCCACGTCTCCTCCCAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp CCAGAAGCACTGCAGACTGCCTGGGGATTCGGATGTTaGCGTTGGCTTCCATTGCAGGGTTGCCCTCGGCGC +
Preference number: 6 (lower is better)
Translates to: PEALQTAWGFGC*RWLPLQGCPRR
Trigger: GCGCCGAGGGCAACCCTGCAATGGAAGCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp GGAGGCCCTATGGGAATCCACTGGGTCCAGAAGCACTaGAGACTGCCTGGGGATTCGGATGTTGCCGTTGGC +
Preference number: 6 (lower is better)
Translates to: GGPMGIHWVQKH*RLPGDSDVAVG
Trigger: GCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp TTCAGGTCCACGTGCGCCTGTGTCCTGGAGGCCCTATaGGAATCCACTGGGTCCAGAAGCACTGCAGACTGC +
Preference number: 6 (lower is better)
Translates to: FRSTCACVLEAL*ESTGSRSTADC
Trigger: GCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAGGGCCTCCAGGACACAGGCGCACGTGGACCTGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 72 bp GCAGGGTTGCCCTCGGCGCAGGGTGGAGCACGGGGCTaGAGCTTAGGGCCCTTACTTGATTTCTTCTTCTTC +
Preference number: 6 (lower is better)
Translates to: AGLPSAQGGARG*SLGPLLDFFFF
Trigger: GAAGAAGAAGAAATCAAGTAAGGGCCCTAAGCTTCAGCCCCGTGCTCCACCCTGCGCCGAGGGCAACCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp GTGGGAACGGTTTCCATGAGTTTCTCTGCTGCTGGCTaGGAGATCCCAAGGAGGCTGCTCCTCAGCTGGGAG +
Preference number: 6 (lower is better)
Translates to: VGTVSMSFSAAG*EIPRRLLLSWE
Trigger: CTCCCAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 72 bp ACAGCTTGCTTCCAGAGGCAGCCTGATACCTGGAGCTaGGCGCAGCCTGCTCCTGTATTCCTTCCGTGGGAA +
Preference number: 6 (lower is better)
Translates to: TACFQRQPDTWS*AQPAPVFLPWE
Trigger: TTCCCACGGAAGGAATACAGGAGCAGGCTGCGCTCAGCTCCAGGTATCAGGCTGCCTCTGGAAGCAAGCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp TCCTTCCGTGGGAACGGTTTCCATGAGTTTCTCTGCTaGTGGCTGGGAGATCCCAAGGAGGCTGCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: SFRGNGFHEFLC*WLGDPKEAAPQ
Trigger: CTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp TTCCGTGGGAACGGTTTCCATGAGTTTCTCTGCTGCTaGCTGGGAGATCCCAAGGAGGCTGCTCCTCAGCTG +
Preference number: 6 (lower is better)
Translates to: FRGNGFHEFLCC*LGDPKEAAPQL
Trigger: CAGCTGAGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp TTCTTCTTCTCCATTCTCAGTTCCGGGGCTTGCTTCTaGGAACACAGCCTGGGTCGGCCAGGCCCATCCACA +
Preference number: 6 (lower is better)
Translates to: FFFSILSSGACF*EHSLGRPGPST
Trigger: TGTGGATGGGCCTGGCCGACCCAGGCTGTGTTCCCAGAAGCAAGCCCCGGAACTGAGAATGGAGAAGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 72 bp CCTGCTCCTGTATTCCTTCCGTGGGAACGGTTTCCATaGGTTTCTCTGCTGCTGGCTGGGAGATCCCAAGGA +
Preference number: 6 (lower is better)
Translates to: PAPVFLPWERFP*VSLLLAGRSQG
Trigger: TCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAAGGAATACAGGAGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 72 bp TGGAAGTCAAGGAACAGCTTGCTTCCAGAGGCAGCCTaGTACCTGGAGCTGAGCGCAGCCTGCTCCTGTATT +
Preference number: 6 (lower is better)
Translates to: WKSRNSLLPEAA*YLELSAACSCI
Trigger: AATACAGGAGCAGGCTGCGCTCAGCTCCAGGTATCAGGCTGCCTCTGGAAGCAAGCTGTTCCTTGACTTCCA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp TATTCCTTCCGTGGGAACGGTTTCCATGAGTTTCTCTaGTGCTGGCTGGGAGATCCCAAGGAGGCTGCTCCT +
Preference number: 6 (lower is better)
Translates to: YSFRGNGFHEFL*CWLGDPKEAAP
Trigger: AGGAGCAGCCTCCTTGGGATCTCCCAGCCAGCAGCAGAGAAACTCATGGAAACCGTTCCCACGGAAGGAATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp CTATGGGAATCCACTGGGTCCAGAAGCACTGCAGACTaGCTGGGGATTCGGATGTTGCCGTTGGCTTCCATT +
Preference number: 6 (lower is better)
Translates to: LWESTGSRSTAD*LGIRMLPLASI
Trigger: AATGGAAGCCAACGGCAACATCCGAATCCCCAGGCAGTCTGCAGTGCTTCTGGACCCAGTGGATTCCCATAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp CAGGTATTTGCACTTCCCTTTTTCTTCAGGTCCACGTaGGCCTGTGTCCTGGAGGCCCTATGGGAATCCACT +
Preference number: 6 (lower is better)
Translates to: QVFALPFFFRST*ACVLEALWEST
Trigger: AGTGGATTCCCATAGGGCCTCCAGGACACAGGCGCACGTGGACCTGAAGAAAAAGGGAAGTGCAAATACCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp CTGTCCTCATCAGCACCCTTCATGATCTCCATGGAGTaGAAGTCAAGGAACAGCTTGCTTCCAGAGGCAGCC +
Preference number: 6 (lower is better)
Translates to: LSSSAPFMISME*KSRNSLLPEAA
Trigger: GGCTGCCTCTGGAAGCAAGCTGTTCCTTGACTTCCACTCCATGGAGATCATGAAGGGTGCTGATGAGGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CCA 72 bp AGGGTAGGTTTGTCTGGACTCTGCCTGGCTCAGCTCTaGGTGAAGACTGAAGGAAACCGGGTCTATCTCTTC +
Preference number: 6 (lower is better)
Translates to: RVGLSGLCLAQL*VKTEGNRVYLF
Trigger: GAAGAGATAGACCCGGTTTCCTTCAGTCTTCACCCAGAGCTGAGCCAGGCAGAGTCCAGACAAACCTACCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CAA 90 bp GAGGTCCCAGGAGTTAAAAGGAGGTGGAAGAAAGTCAGGGTAGGTTaGTCTGGACTCTGCCTGGCTCAGCTCTGGGTGAAGACTGAAGGA +
Preference number: 6 (lower is better)
Translates to: EVPGVKRRWKKVRVG*SGLCLAQLWVKTEG
Trigger: TCCTTCAGTCTTCACCCAGAGCTGAGCCAGGCAGAGTCCAGACAAACCTACCCTGACTTTCTTCCACCTCCTTTTAACTCCTGGGACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CAA 90 bp GGGCTTCTTCGTGGCGAAAACCTTTCTTTCGAGAAGGGCCTGACTTaGAAATCCCTTCTGGGGATGGTAAGGGTTTGGACAGGGCACTGG +
Preference number: 6 (lower is better)
Translates to: GLLRGENLSFEKGLT*KSLLGMVRVWTGHW
Trigger: CCAGTGCCCTGTCCAAACCCTTACCATCCCCAGAAGGGATTTCAAAGTCAGGCCCTTCTCGAAAGAAAGGTTTTCGCCACGAAGAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS GCA 72 bp GCCAGGCCCATCCACAGAGTTAGGCAAAGTCTCAAATaGATAGTAGGATGGGTGGGCTTCTTCGTGGCGAAA +
Preference number: 6 (lower is better)
Translates to: ARPIHRVRQSLK*IVGWVGFFVAK
Trigger: TTTCGCCACGAAGAAGCCCACCCATCCTACTATGCATTTGAGACTTTGCCTAACTCTGTGGATGGGCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS CAA 72 bp CGTGGCGAAAACCTTTCTTTCGAGAAGGGCCTGACTTaGAAATCCCTTCTGGGGATGGTAAGGGTTTGGACA +
Preference number: 6 (lower is better)
Translates to: RGENLSFEKGLT*KSLLGMVRVWT
Trigger: TGTCCAAACCCTTACCATCCCCAGAAGGGATTTCAAAGTCAGGCCCTTCTCGAAAGAAAGGTTTTCGCCACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11
CDS TCA 72 bp TCACACTGCACAGTCTGGACTTGCAGCCATTCTAGTTaGAGAAGTCTGTCTATGTACTTCCCAAGGAATCCC +
Preference number: 6 (lower is better)
Translates to: SHCTVWTCSHSS*RSLSMYFPRNP
Trigger: GGGATTCCTTGGGAAGTACATAGACAGACTTCTTCAACTAGAATGGCTGCAAGTCCAGACTGTGCAGTGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000094251.11