RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM214B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036002

Ensembl transcript IDs: ENSMUST00000036462.12, ENSMUST00000107956.8, ENSMUST00000107957.8, ENSMUST00000107958.8, ENSMUST00000107959.8, ENSMUST00000135067.8

Found 172 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTCTCCACAGTTTACCCTGTCCAGGAT +
Preference number: 1 (lower is better)
Translates to: IVNLGVSGMRTLIQA*RGSRHFSTVYPVQD
Trigger: ATCCTGGACAGGGTAAACTGTGGAGAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR GCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCGAGCAGCTCTCCCCTTaGCCCGACATCAGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCEQLSP*PDISFF
Trigger: GAAGAAGCTGATGTCGGGGCAAGGGGAGAGCTGCTC...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGAGGGGACAGGCACATaGAGTACCCAGAGCAGACAG +
Preference number: 2 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLEGTGT*STQSRQ
Trigger: CTGTCTGCTCTGGGTACTTCATGTGCCTGTCCCCTC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGAGCAGCTCTCCCCTTaGCCCGACATCAGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLEQLSP*PDISFF
Trigger: GAAGAAGCTGATGTCGGGGCAAGGGGAGAGCTGCTC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTC +
Preference number: 2 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCTLIQA*RGSRHF
Trigger: GAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGT...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCGTGACTCAGTTCCTCTaGAATAAACCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCVTQFL*NKPSAL
Trigger: AAGGGCAGAGGGTTTATTCCAGAGGAACTGAGTCAC...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTC +
Preference number: 2 (lower is better)
Translates to: LWNKPSALSQRRAALPLPTLIQA*RGSRHF
Trigger: GAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGT...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTATCTGAGAGTGGGGTaGTGCCAATTATCAGGTTTG +
Preference number: 2 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCYLRVG*CQLSGL
Trigger: CAAACCTGATAATTGGCATCACCCCACTCTCAGATA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCCTGGCATTACTTGCCTaGGAACTTGGGACAATCTCA +
Preference number: 2 (lower is better)
Translates to: LWNKPSALSQRRAALPLPLALLA*ELGTIS
Trigger: TGAGATTGTCCCAAGTTCCCAGGCAAGTAATGCCAG...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGCCAATTATCAGGTTTaGGAGGTCACCAAGGCAATC +
Preference number: 2 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLANYQV*EVTKAI
Trigger: GATTGCCTTGGTGACCTCCCAAACCTGATAATTGGC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGCCAATTATCAGGTTTaGGAGGTCACCAAGGCAATC +
Preference number: 2 (lower is better)
Translates to: LWNKPSALSQRRAALPLPANYQV*EVTKAI
Trigger: GATTGCCTTGGTGACCTCCCAAACCTGATAATTGGC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGTGACTCAGTTCCTCTaGAATAAACCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: LWNKPSALSQRRAALPLPVTQFL*NKPSAL
Trigger: AAGGGCAGAGGGTTTATTCCAGAGGAACTGAGTCAC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGTGACTCAGTTCCTCTaGAATAAACCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLVTQFL*NKPSAL
Trigger: AAGGGCAGAGGGTTTATTCCAGAGGAACTGAGTCAC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGTTAAATAAGGTCACTTaGATGGTGCCCACCTTGGGC +
Preference number: 2 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLLNKVT*MVPTLG
Trigger: GCCCAAGGTGGGCACCATCCAAGTGACCTTATTTAA...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCTATCTGAGAGTGGGGTaGTGCCAATTATCAGGTTTG +
Preference number: 2 (lower is better)
Translates to: LWNKPSALSQRRAALPLPYLRVG*CQLSGL
Trigger: CAAACCTGATAATTGGCATCACCCCACTCTCAGATA...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR GCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAGAGCAGCTCTCCCCTTaGCCCGACATCAGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQEREEQLSP*PDISFF
Trigger: GAAGAAGCTGATGTCGGGGCAAGGGGAGAGCTGCTC...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR GCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAATAATAAGTGGCCCCTaGCCAGGACAGGGAGGCAAC +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQEREIISGP*PGQGGN
Trigger: GTTGCCTCCCTGTCCTGGGCAGGGGCCACTTATTAT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAACCAAGAAGAGGCGATaGCGCAGGAAGGTCATGTGG +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQERETKKRR*RRKVMW
Trigger: CCACATGACCTTCCTGCGCCATCGCCTCTTCTTGGT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAGGTTGGAGCAATATCTaGGAGTGGGGTGATGCCAAT +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQEREGWSNI*EWGDAN
Trigger: ATTGGCATCACCCCACTCTCAGATATTGCTCCAACC...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTC +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQERETLIQA*RGSRHF
Trigger: GAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAACTGGCATTACTTGCCTaGGAACTTGGGACAATCTCA +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQERELALLA*ELGTIS
Trigger: TGAGATTGTCCCAAGTTCCCAGGCAAGTAATGCCAG...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATATCTGAGAGTGGGGTaGTGCCAATTATCAGGTTTG +
Preference number: 2 (lower is better)
Translates to: THTTHTGFRRWVEGQEREYLRVG*CQLSGL
Trigger: CAAACCTGATAATTGGCATCACCCCACTCTCAGATA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTC +
Preference number: 2 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRTLIQA*RGSRHF
Trigger: GAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGT...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGTTGGAGCAATATCTaGGAGTGGGGTGATGCCAAT +
Preference number: 2 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFGWSNI*EWGDAN
Trigger: ATTGGCATCACCCCACTCTCAGATATTGCTCCAACC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTCTTTCGAAGATGGGTTaGAGGGCAGGAAAGGGAAAA +
Preference number: 2 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFLSKMG*RAGKGK
Trigger: TTTTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAG...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGCCAATTATCAGGTTTaGGAGGTCACCAAGGCAATC +
Preference number: 2 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFANYQV*EVTKAI
Trigger: GATTGCCTTGGTGACCTCCCAAACCTGATAATTGGC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGTGACTCAGTTCCTCTaGAATAAACCCTCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFVTQFL*NKPSAL
Trigger: AAGGGCAGAGGGTTTATTCCAGAGGAACTGAGTCAC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR TCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTTATCTGAGAGTGGGGTaGTGCCAATTATCAGGTTTG +
Preference number: 2 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFYLRVG*CQLSGL
Trigger: CAAACCTGATAATTGGCATCACCCCACTCTCAGATA...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCAGAGCAGCTCTCCCCTaGCCCCGACATCAGCTTCTT +
Preference number: 3 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCRAALP*PRHQLL
Trigger: AAGAAGCTGATGTCGGGGCAAGGGGAGAGCTGCTCT...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCGGGCAGCGTGACATGTaGGGGACAGTAAGACCCACT +
Preference number: 3 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCGQRDM*GTVRPT
Trigger: AGTGGGTCTTACTGTCCCCAACATGTCACGCTGCCC...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTACTTGCCTGGGAACTaGGGACAATCTCAGGGTAGC +
Preference number: 3 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCYLPGN*GQSQGS
Trigger: GCTACCCTGAGATTGTCCCAAGTTCCCAGGCAAGTA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR TCA 72 bp GTGAGGAGTGGAGTAACTGGGAACCATGTGACTGAATaGGGGGCACCCCTCATCCCAGCTGAGGTAGGTGGG +
Preference number: 3 (lower is better)
Translates to: VRSGVTGNHVTE*GAPLIPAEVGG
Trigger: CCCACCTACCTCAGCTGGGATGAGGGGTGCCCCTCATTCAGTCACATGGTTCCCAGTTACTCCACTCCTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTGCCAATTATCAGGTTaGGGAGGTCACCAAGGCAAT +
Preference number: 3 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCCQLSG*GGHQGN
Trigger: ATTGCCTTGGTGACCTCCCAAACCTGATAATTGGCA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCTACACAAACCCAAGTTaGTATGCACGCACACAGCTG +
Preference number: 3 (lower is better)
Translates to: LWNKPSALSQRRAALPLPYTNPS*YARTQL
Trigger: CAGCTGTGTGCGTGCATACAAACTTGGGTTTGTGTA...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAAGAGCAGCTCTCCCCTaGCCCCGACATCAGCTTCTT +
Preference number: 3 (lower is better)
Translates to: THTTHTGFRRWVEGQERERAALP*PRHQLL
Trigger: AAGAAGCTGATGTCGGGGCAAGGGGAGAGCTGCTCT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR TCA 72 bp TTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTaGAGGGGCTCTCGCCATTTCTCCACAGTTTACCCT +
Preference number: 3 (lower is better)
Translates to: LGVSGMRTLIQA*RGSRHFSTVYP
Trigger: AGGGTAAACTGTGGAGAAATGGCGAGAGCCCCTTCAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATACTTGCCTGGGAACTaGGGACAATCTCAGGGTAGC +
Preference number: 3 (lower is better)
Translates to: THTTHTGFRRWVEGQEREYLPGN*GQSQGS
Trigger: GCTACCCTGAGATTGTCCCAAGTTCCCAGGCAAGTA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATGCCAATTATCAGGTTaGGGAGGTCACCAAGGCAAT +
Preference number: 3 (lower is better)
Translates to: THTTHTGFRRWVEGQERECQLSG*GGHQGN
Trigger: ATTGCCTTGGTGACCTCCCAAACCTGATAATTGGCA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
3UTR-3UTR CAA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTTGCCAATTATCAGGTTaGGGAGGTCACCAAGGCAAT +
Preference number: 3 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFCQLSG*GGHQGN
Trigger: ATTGCCTTGGTGACCTCCCAAACCTGATAATTGGCA...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCCCAGCAGGGTCCGGCTaGCAGCAGGGGTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCPAGSG*QQGWER
Trigger: CCTTTCCCACCCCTGCTGTCAGCCGGACCCTGCTGG...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGCCAGCAGGGTCCGGCTaGCAGCAGGGGTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLPAGSG*QQGWER
Trigger: CCTTTCCCACCCCTGCTGTCAGCCGGACCCTGCTGG...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCGCGCCTCCGAGGGGCTaGCCCCTCATCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTAPPRG*PLILRA
Trigger: AGCTCTGAGGATGAGGGGCCAGCCCCTCGGAGGCGC...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGCGCCTCCGAGGGGCTaGCCCCTCATCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLAPPRG*PLILRA
Trigger: AGCTCTGAGGATGAGGGGCCAGCCCCTCGGAGGCGC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCCAGCAGGGTCCGGCTaGCAGCAGGGGTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHPAGSG*QQGWER
Trigger: CCTTTCCCACCCCTGCTGTCAGCCGGACCCTGCTGG...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGGGCCAGGGGGTGTGTaGTCGGGACTGTGCCCATTG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLGPGGV*SGLCPL
Trigger: CAATGGGCACAGTCCCGAGCACACACCCCCTGGCCC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCGGGCCAGGGGGTGTGTaGTCGGGACTGTGCCCATTG +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTGPGGV*SGLCPL
Trigger: CAATGGGCACAGTCCCGAGCACACACCCCCTGGCCC...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGGGCCAGGGGGTGTGTaGTCGGGACTGTGCCCATTG +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPGPGGV*SGLCPL
Trigger: CAATGGGCACAGTCCCGAGCACACACCCCCTGGCCC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCCCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGTCAAGTGTGTGCAGCTaGCCTGAAGGGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLSSVCS*PEGAGP
Trigger: AGGGCCAGCCCCTTCAGGCCAGCTGCACACACTTGA...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGCCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCCCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCCGGGACTGTGCCCATTaGCAGTTCCATGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPRDCAH*QFHGTP
Trigger: GGGAGTCCCATGGAACTGCCAATGGGCACAGTCCCG...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCGCGTCCTCGAAGCAGTaGTTCCTCAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCASSKQ*FLKVAQ
Trigger: CTGGGCAACTTTGAGGAATCACTGCTTCGAGGACGC...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGAGAGCTCCGGAACCTaGGGTGCAGCAAGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPESSGT*GAASSR
Trigger: TCTGCTACTTGCTGCACCTCAGGTTCCGGAGCTCTC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTCAGTGTCAAGTGTGTaGAGCTGGCCTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCSVSSV*SWPEGA
Trigger: AGCCCCTTCAGGCCAGCTGCACACACTTGACACTGA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCGTGTGCTCGGGACTGTaGCCATTGGCAGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTVCSGL*PLAVPW
Trigger: CCATGGAACTGCCAATGGGCACAGTCCCGAGCACAC...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGTGTGCTCGGGACTGTaGCCATTGGCAGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLVCSGL*PLAVPW
Trigger: CCATGGAACTGCCAATGGGCACAGTCCCGAGCACAC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACTCAAGTGTGTGCAGCTaGCCTGAAGGGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHSSVCS*PEGAGP
Trigger: AGGGCCAGCCCCTTCAGGCCAGCTGCACACACTTGA...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGGATGGTGCCCACCTTaGGCACACTGTAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPGWCPP*AHCNPS
Trigger: GGAAGGGTTACAGTGTGCCCAAGGTGGGCACCATCC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCCCTCATCCTCAGAGCTaGCATCAAGGGTTTCTCCAG +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCPHPQS*HQGFLQ
Trigger: CTGGAGAAACCCTTGATGTCAGCTCTGAGGATGAGG...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGCGTCCTCGAAGCAGTaGTTCCTCAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLASSKQ*FLKVAQ
Trigger: CTGGGCAACTTTGAGGAATCACTGCTTCGAGGACGC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCGCGTCCTCGAAGCAGTaGTTCCTCAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTASSKQ*FLKVAQ
Trigger: CTGGGCAACTTTGAGGAATCACTGCTTCGAGGACGC...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCGTGGTATTACCTCCGTaGTCCACAACACAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCVVLPP*STTQRP
Trigger: TGGCCTCTGTGTTGTGGAGCACGGAGGTAATACCAC...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTCAGTGTCAAGTGTGTaGAGCTGGCCTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTSVSSV*SWPEGA
Trigger: AGCCCCTTCAGGCCAGCTGCACACACTTGACACTGA...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGAGGCGGATATCTCCATaGAGGCTTAAGCGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLRRISP*RLKRPE
Trigger: CTCAGGCCGCTTAAGCCTGCATGGAGATATCCGCCT...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCAGCCAGGGTGTACTCTaGGTCCCTGAAGTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTSQGVL*VPEVQG
Trigger: ACCTTGGACTTCAGGGACCCAGAGTACACCCTGGCT...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTGGCATCAGAACTATTaGCAGCAAGAGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCWHQNY*QQEGSP
Trigger: TGGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACGGATGGTGCCCACCTTaGGCACACTGTAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHGWCPP*AHCNPS
Trigger: GGAAGGGTTACAGTGTGCCCAAGGTGGGCACCATCC...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCATAAGGTCACTTGGATaGTGCCCACCTTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCIRSLG*CPPWAH
Trigger: GTGTGCCCAAGGTGGGCACCATCCAAGTGACCTTAT...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACCAGCAGGGTCCGGCTaGCAGCAGGGGTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQPAGSG*QQGWER
Trigger: CCTTTCCCACCCCTGCTGTCAGCCGGACCCTGCTGG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGTGGTATTACCTCCGTaGTCCACAACACAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLVVLPP*STTQRP
Trigger: TGGCCTCTGTGTTGTGGAGCACGGAGGTAATACCAC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGTGGTATTACCTCCGTaGTCCACAACACAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPVVLPP*STTQRP
Trigger: TGGCCTCTGTGTTGTGGAGCACGGAGGTAATACCAC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACAGGCGGATATCTCCATaGAGGCTTAAGCGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHRRISP*RLKRPE
Trigger: CTCAGGCCGCTTAAGCCTGCATGGAGATATCCGCCT...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACAGCCAGGGTGTACTCTaGGTCCCTGAAGTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHSQGVL*VPEVQG
Trigger: ACCTTGGACTTCAGGGACCCAGAGTACACCCTGGCT...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGCGCCTCCGAGGGGCTaGCCCCTCATCCTCAGAGCT +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLAPPRG*PLILRA
Trigger: AGCTCTGAGGATGAGGGGCCAGCCCCTCGGAGGCGC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTGGCATCAGAACTATTaGCAGCAAGAGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTWHQNY*QQEGSP
Trigger: TGGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCA...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGTGGCATCAGAACTATTaGCAGCAAGAGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLWHQNY*QQEGSP
Trigger: TGGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCA...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGGGACTGCAGTCTGTTaGGTCCAAAACAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLGTAVC*VQNRLL
Trigger: AAGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCGGGACTGCAGTCTGTTaGGTCCAAAACAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: LWNKPSALSQRRAALPLPGTAVC*VQNRLL
Trigger: AAGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCC...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACACCAAGAAGAGGCGATaGCGCAGGAAGGTCATGTGG +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHTKKRR*RRKVMW
Trigger: CCACATGACCTTCCTGCGCCATCGCCTCTTCTTGGT...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTCCAGCAGGGTCCGGCTaGCAGCAGGGGTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRPAGSG*QQGWER
Trigger: CCTTTCCCACCCCTGCTGTCAGCCGGACCCTGCTGG...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGGGCCAGGGGGTGTGTaGTCGGGACTGTGCCCATTG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLGPGGV*SGLCPL
Trigger: CAATGGGCACAGTCCCGAGCACACACCCCCTGGCCC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACTGGCATCAGAACTATTaGCAGCAAGAGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHWHQNY*QQEGSP
Trigger: TGGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCA...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTAAATAAGGTCACTTaGATGGTGCCCACCTTGGGC +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCLNKVT*MVPTLG
Trigger: GCCCAAGGTGGGCACCATCCAAGTGACCTTATTTAA...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATCAAGTGTGTGCAGCTaGCCTGAAGGGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERESSVCS*PEGAGP
Trigger: AGGGCCAGCCCCTTCAGGCCAGCTGCACACACTTGA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAACGCAGGAAGGTCATGTaGGCAGCAGGCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERERRKVM*AAGMSE
Trigger: CTCGGACATGCCTGCTGCCCACATGACCTTCCTGCG...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAGAGAGCTCCGGAACCTaGGGTGCAGCAAGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQEREESSGT*GAASSR
Trigger: TCTGCTACTTGCTGCACCTCAGGTTCCGGAGCTCTC...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATCAAGTGTGTGCAGCTaGCCTGAAGGGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQSSVCS*PEGAGP
Trigger: AGGGCCAGCCCCTTCAGGCCAGCTGCACACACTTGA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGTCAAGTGTGTGCAGCTaGCCTGAAGGGGCTGGCCCT +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLSSVCS*PEGAGP
Trigger: AGGGCCAGCCCCTTCAGGCCAGCTGCACACACTTGA...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGCCATTGGCAGTTCCATaGGACTCCCTAGGCCAGGGG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLPLAVP*DSLGQG
Trigger: CCCCTGGCCTAGGGAGTCCCATGGAACTGCCAATGG...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGCGGGACTGTGCCCATTaGCAGTTCCATGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLRDCAH*QFHGTP
Trigger: GGGAGTCCCATGGAACTGCCAATGGGCACAGTCCCG...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGCAGCCTTCGCTTGGTaGGGCAGGGGCCAGGAGGTC +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFAAFAW*GRGQEV
Trigger: GACCTCCTGGCCCCTGCCCCACCAAGCGAAGGCTGC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACGCAGGAAGGTCATGTaGGCAGCAGGCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQRRKVM*AAGMSE
Trigger: CTCGGACATGCCTGCTGCCCACATGACCTTCCTGCG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGCGCAGGAAGGTCATGTaGGCAGCAGGCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLRRKVM*AAGMSE
Trigger: CTCGGACATGCCTGCTGCCCACATGACCTTCCTGCG...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAGCGTCCTCGAAGCAGTaGTTCCTCAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQEREASSKQ*FLKVAQ
Trigger: CTGGGCAACTTTGAGGAATCACTGCTTCGAGGACGC...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATCAGTGTCAAGTGTGTaGAGCTGGCCTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERESVSSV*SWPEGA
Trigger: AGCCCCTTCAGGCCAGCTGCACACACTTGACACTGA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAGTGTGCTCGGGACTGTaGCCATTGGCAGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQVCSGL*PLAVPW
Trigger: CCATGGAACTGCCAATGGGCACAGTCCCGAGCACAC...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAAGGTCACTTGGATGGTaGCCACCTTGGGCACACTGT +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERERSLGW*PPWAHC
Trigger: ACAGTGTGCCCAAGGTGGGCACCATCCAAGTGACCT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAACTGTCCCCCTTGATCTaGGAAAGCCCAGTCTCTGGT +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERELSPLI*ESPVSG
Trigger: ACCAGAGACTGGGCTTTCCCAGATCAAGGGGGACAG...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTCGGGACTGTGCCCATTaGCAGTTCCATGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRRDCAH*QFHGTP
Trigger: GGGAGTCCCATGGAACTGCCAATGGGCACAGTCCCG...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGGATGGTGCCCACCTTaGGCACACTGTAACCCTTCC +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLGWCPP*AHCNPS
Trigger: GGAAGGGTTACAGTGTGCCCAAGGTGGGCACCATCC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTCGCAGGAAGGTCATGTaGGCAGCAGGCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRRRKVM*AAGMSE
Trigger: CTCGGACATGCCTGCTGCCCACATGACCTTCCTGCG...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTGGTGTGCAAAGTATTaGAGGAAGCATTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTWCAKY*RKHLMR
Trigger: TCTCATCAAATGCTTCCTTCAATACTTTGCACACCA...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGTGGTGTGCAAAGTATTaGAGGAAGCATTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLWCAKY*RKHLMR
Trigger: TCTCATCAAATGCTTCCTTCAATACTTTGCACACCA...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGCGTCCTCGAAGCAGTaGTTCCTCAAAGTTGCCCAG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLASSKQ*FLKVAQ
Trigger: CTGGGCAACTTTGAGGAATCACTGCTTCGAGGACGC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGTCAGTGTCAAGTGTGTaGAGCTGGCCTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLSVSSV*SWPEGA
Trigger: AGCCCCTTCAGGCCAGCTGCACACACTTGACACTGA...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCATTTGTGCAAGATTGTaGAAATCAGTGTCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: PVQDGRTGRLWAHLGSGCICARL*KSVSSV
Trigger: CACACTTGACACTGATTTGCACAATCTTGCACAAAT...GCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGCTTACCCCCTATTTGTaGAAGATTGTGCAAATCAGT +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLLTPYL*KIVQIS
Trigger: ACTGATTTGCACAATCTTGCACAAATAGGGGGTAAG...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTGTGTGCTCGGGACTGTaGCCATTGGCAGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRVCSGL*PLAVPW
Trigger: CCATGGAACTGCCAATGGGCACAGTCCCGAGCACAC...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAAGGTCACTTGGATGGTaGCCACCTTGGGCACACTGT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQRSLGW*PPWAHC
Trigger: ACAGTGTGCCCAAGGTGGGCACCATCCAAGTGACCT...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAAGGCGGATATCTCCATaGAGGCTTAAGCGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQRRISP*RLKRPE
Trigger: CTCAGGCCGCTTAAGCCTGCATGGAGATATCCGCCT...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGAGGCGGATATCTCCATaGAGGCTTAAGCGGCCTGAG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLRRISP*RLKRPE
Trigger: CTCAGGCCGCTTAAGCCTGCATGGAGATATCCGCCT...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAAGCCAGGGTGTACTCTaGGTCCCTGAAGTCCAAGGT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQSQGVL*VPEVQG
Trigger: ACCTTGGACTTCAGGGACCCAGAGTACACCCTGGCT...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACTGTCCCCCTTGATCTaGGAAAGCCCAGTCTCTGGT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQLSPLI*ESPVSG
Trigger: ACCAGAGACTGGGCTTTCCCAGATCAAGGGGGACAG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAAATAAGGTCACTTGGATaGTGCCCACCTTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQEREIRSLG*CPPWAH
Trigger: GTGTGCCCAAGGTGGGCACCATCCAAGTGACCTTAT...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGACCAAGAAGAGGCGATaGCGCAGGAAGGTCATGTGG +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLTKKRR*RRKVMW
Trigger: CCACATGACCTTCCTGCGCCATCGCCTCTTCTTGGT...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAGTGGTATTACCTCCGTaGTCCACAACACAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQVVLPP*STTQRP
Trigger: TGGCCTCTGTGTTGTGGAGCACGGAGGTAATACCAC...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCATTTGTGCAAGATTGTaGAAATCAGTGTCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTICARL*KSVSSV
Trigger: CACACTTGACACTGATTTGCACAATCTTGCACAAAT...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGATTTGTGCAAGATTGTaGAAATCAGTGTCAAGTGTG +
Preference number: 4 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLICARL*KSVSSV
Trigger: CACACTTGACACTGATTTGCACAATCTTGCACAAAT...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTCGGGACTGTGCCCATTaGCAGTTCCATGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFRDCAH*QFHGTP
Trigger: GGGAGTCCCATGGAACTGCCAATGGGCACAGTCCCG...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATGGCATCAGAACTATTaGCAGCAAGAGGGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQWHQNY*QQEGSP
Trigger: TGGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAGGGACTGCAGTCTGTTaGGTCCAAAACAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQGTAVC*VQNRLL
Trigger: AAGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCC...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGGGGACTGCAGTCTGTTaGGTCCAAAACAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLGTAVC*VQNRLL
Trigger: AAGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCC...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CACCCAAATAGTCAATTTGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCCTGATAAGGTCACTTGGATaGTGCCCACCTTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: HPNSQFGRERDEDFNSSLIRSLG*CPPWAH
Trigger: GTGTGCCCAAGGTGGGCACCATCCAAGTGACCTTAT...CAGGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTCGCAGGAAGGTCATGTaGGCAGCAGGCATGTCCGAG +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFRRKVM*AAGMSE
Trigger: CTCGGACATGCCTGCTGCCCACATGACCTTCCTGCG...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTACCAAGAAGAGGCGATaGCGCAGGAAGGTCATGTGG +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRTKKRR*RRKVMW
Trigger: CCACATGACCTTCCTGCGCCATCGCCTCTTCTTGGT...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR TCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGAGAGCTCCGGAACCTaGGGTGCAGCAAGTAGCAGA +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFESSGT*GAASSR
Trigger: TCTGCTACTTGCTGCACCTCAGGTTCCGGAGCTCTC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTTCAGTGTCAAGTGTGTaGAGCTGGCCTGAAGGGGCT +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFSVSSV*SWPEGA
Trigger: AGCCCCTTCAGGCCAGCTGCACACACTTGACACTGA...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTAGGTCACTTGGATGGTaGCCACCTTGGGCACACTGT +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFRSLGW*PPWAHC
Trigger: ACAGTGTGCCCAAGGTGGGCACCATCCAAGTGACCT...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTAAATAAGGTCACTTaGATGGTGCCCACCTTGGGC +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQLNKVT*MVPTLG
Trigger: GCCCAAGGTGGGCACCATCCAAGTGACCTTATTTAA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR GCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGTGGTATTACCTCCGTaGTCCACAACACAGAGGCCA +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFVVLPP*STTQRP
Trigger: TGGCCTCTGTGTTGTGGAGCACGGAGGTAATACCAC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGACTGCAGTCTGTTaGGTCCAAAACAGGCTCCTT +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFGTAVC*VQNRLL
Trigger: AAGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTATAAGGTCACTTGGATaGTGCCCACCTTGGGCACAC +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFIRSLG*CPPWAH
Trigger: GTGTGCCCAAGGTGGGCACCATCCAAGTGACCTTAT...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTTTAAATAAGGTCACTTaGATGGTGCCCACCTTGGGC +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRLNKVT*MVPTLG
Trigger: GCCCAAGGTGGGCACCATCCAAGTGACCTTATTTAA...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
3UTR CAA 72 bp GGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTaGGGCGTGAGCGGGATGAGGACTTTAATTCAAGCC +
Preference number: 4 (lower is better)
Translates to: GRTEALNTQIVN*GVSGMRTLIQA
Trigger: GGCTTGAATTAAAGTCCTCATCCCGCTCACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAATGGTGTGCAAAGTATTaGAGGAAGCATTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQEREWCAKY*RKHLMR
Trigger: TCTCATCAAATGCTTCCTTCAATACTTTGCACACCA...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAACTTACCCCCTATTTGTaGAAGATTGTGCAAATCAGT +
Preference number: 4 (lower is better)
Translates to: THTTHTGFRRWVEGQERELTPYL*KIVQIS
Trigger: ACTGATTTGCACAATCTTGCACAAATAGGGGGTAAG...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACTTACCCCCTATTTGTaGAAGATTGTGCAAATCAGT +
Preference number: 4 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQLTPYL*KIVQIS
Trigger: ACTGATTTGCACAATCTTGCACAAATAGGGGGTAAG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR TCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTTGGTGTGCAAAGTATTaGAGGAAGCATTTGATGAGA +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRWCAKY*RKHLMR
Trigger: TCTCATCAAATGCTTCCTTCAATACTTTGCACACCA...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTCTTACCCCCTATTTGTaGAAGATTGTGCAAATCAGT +
Preference number: 4 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRLTPYL*KIVQIS
Trigger: ACTGATTTGCACAATCTTGCACAAATAGGGGGTAAG...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR GCA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTCTTACCCCCTATTTGTaGAAGATTGTGCAAATCAGT +
Preference number: 4 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFLTPYL*KIVQIS
Trigger: ACTGATTTGCACAATCTTGCACAAATAGGGGGTAAG...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGCAGGGGTTGCTCCCGTaGCCCACCCTAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLQGLLP*PTLATG
Trigger: CCCAGTGGCTAGGGTGGGCAACGGGAGCAACCCCTG...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCCAGGGGTTGCTCCCGTaGCCCACCCTAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: LWNKPSALSQRRAALPLPQGLLP*PTLATG
Trigger: CCCAGTGGCTAGGGTGGGCAACGGGAGCAACCCCTG...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGTCCCTAGGCCAGGGGTaGCTCCCGTTGCCCACCCTA +
Preference number: 5 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLSLGQG*LPLPTL
Trigger: TAGGGTGGGCAACGGGAGCAACCCCTGGCCTAGGGA...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCTCCCTAGGCCAGGGGTaGCTCCCGTTGCCCACCCTA +
Preference number: 5 (lower is better)
Translates to: LWNKPSALSQRRAALPLPSLGQG*LPLPTL
Trigger: TAGGGTGGGCAACGGGAGCAACCCCTGGCCTAGGGA...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACTCCCTAGGCCAGGGGTaGCTCCCGTTGCCCACCCTA +
Preference number: 5 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHSLGQG*LPLPTL
Trigger: TAGGGTGGGCAACGGGAGCAACCCCTGGCCTAGGGA...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCTCGGGACTGTGCCCATaGGCAGTTCCATGGGACTCC +
Preference number: 5 (lower is better)
Translates to: LWNKPSALSQRRAALPLPSGLCP*AVPWDS
Trigger: GGAGTCCCATGGAACTGCCAATGGGCACAGTCCCGA...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp GTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTAGGTTCAGGATGCTTGGGGCAGCGTGACATGTaGGGGACAGTAAGACCCACT +
Preference number: 5 (lower is better)
Translates to: VQDGRTGRLWAHLGSGCLGQRDM*GTVRPT
Trigger: AGTGGGTCTTACTGTCCCCAACATGTCACGCTGCCC...CAAGCATCCTGAACCTAGGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp ACACACACCACACATACAGGCTTTCGAAGATGGGTTGAAGGGCAGGAAAGGGAACAGGGGTTGCTCCCGTaGCCCACCCTAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: THTTHTGFRRWVEGQEREQGLLP*PTLATG
Trigger: CCCAGTGGCTAGGGTGGGCAACGGGAGCAACCCCTG...TTCCCTTTCCTGCCCTTCAACCCATCTTCGAAAGCCTGTATGTGTGGTGTGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CTCTGGAATAAACCCTCTGCCCTTAGCCAGAGGAGAGCAGCTCTCCCCTTGCCCTTGGCATCAGAACTATaGGCAGCAAGAGGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: LWNKPSALSQRRAALPLPLASEL*AARGQP
Trigger: GGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCAA...GGGCAAGGGGAGAGCTGCTCTCCTCTGGCTAAGGGCAGAGGGTTTATTCCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp TCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACCTGGGACTGCAGTCTGTaGGGTCCAAAACAGGCTCCT +
Preference number: 5 (lower is better)
Translates to: SPQFTLSRMVGQAGFGPTWDCSL*GPKQAP
Trigger: AGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCCA...GGTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAACAGGGGTTGCTCCCGTaGCCCACCCTAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQQGLLP*PTLATG
Trigger: CCCAGTGGCTAGGGTGGGCAACGGGAGCAACCCCTG...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACTTGGCATCAGAACTATaGGCAGCAAGAGGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHLASEL*AARGQP
Trigger: GGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCAA...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp TTCTCCACAGTTTACCCTGTCCAGGATGGTAGGACAGGCAGGCTTTGGGCCCACTGGGACTGCAGTCTGTaGGGTCCAAAACAGGCTCCT +
Preference number: 5 (lower is better)
Translates to: FSTVYPVQDGRTGRLWAHWDCSL*GPKQAP
Trigger: AGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCCA...GTGGGCCCAAAGCCTGCCTGTCCTACCATCCTGGACAGGGTAAACTGTGGAGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATCCCTAGGCCAGGGGTaGCTCCCGTTGCCCACCCTA +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQSLGQG*LPLPTL
Trigger: TAGGGTGGGCAACGGGAGCAACCCCTGGCCTAGGGA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTCAGGGGTTGCTCCCGTaGCCCACCCTAGCCACTGGG +
Preference number: 5 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFQGLLP*PTLATG
Trigger: CCCAGTGGCTAGGGTGGGCAACGGGAGCAACCCCTG...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATCGGGACTGTGCCCATaGGCAGTTCCATGGGACTCC +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQSGLCP*AVPWDS
Trigger: GGAGTCCCATGGAACTGCCAATGGGCACAGTCCCGA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTTCGGGACTGTGCCCATaGGCAGTTCCATGGGACTCC +
Preference number: 5 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRSGLCP*AVPWDS
Trigger: GGAGTCCCATGGAACTGCCAATGGGCACAGTCCCGA...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAAGGGCAGCGTGACATGTaGGGGACAGTAAGACCCACT +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQGQRDM*GTVRPT
Trigger: AGTGGGTCTTACTGTCCCCAACATGTCACGCTGCCC...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTGGCATCAGAACTATaGGCAGCAAGAGGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQLASEL*AARGQP
Trigger: GGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCAA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp CCCAGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATGGGACTGCAGTCTGTaGGGTCCAAAACAGGCTCCT +
Preference number: 5 (lower is better)
Translates to: PRADRVWKDRSFKHPNSQWDCSL*GPKQAP
Trigger: AGGAGCCTGTTTTGGACCCAACAGACTGCAGTCCCA...TTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTGGGCAGCGTGACATGTaGGGGACAGTAAGACCCACT +
Preference number: 5 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRGQRDM*GTVRPT
Trigger: AGTGGGTCTTACTGTCCCCAACATGTCACGCTGCCC...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
CDS-3UTR CAA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTTCGGGACTGTGCCCATaGGCAGTTCCATGGGACTCC +
Preference number: 5 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFSGLCP*AVPWDS
Trigger: GGAGTCCCATGGAACTGCCAATGGGCACAGTCCCGA...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp GACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCGTTTGGCATCAGAACTATaGGCAGCAAGAGGGCAGCCC +
Preference number: 5 (lower is better)
Translates to: DRVWKDRSFKHPNSQFGRLASEL*AARGQP
Trigger: GGGCTGCCCTCTTGCTGCCAATAGTTCTGATGCCAA...ACGCCCAAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8
ENSMUST00000135067.8
CDS-3UTR CAA 90 bp AGAGCAGACAGGGTATGGAAGGACCGAAGCTTTAAACACCCAAATAGTCAATTTGGGCAGCGTGACATGTaGGGGACAGTAAGACCCACT +
Preference number: 5 (lower is better)
Translates to: RADRVWKDRSFKHPNSQFGQRDM*GTVRPT
Trigger: AGTGGGTCTTACTGTCCCCAACATGTCACGCTGCCC...AAATTGACTATTTGGGTGTTTAAAGCTTCGGTCCTTCCATACCCTGTCTGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000036462.12
ENSMUST00000107956.8
ENSMUST00000107957.8
ENSMUST00000107958.8
ENSMUST00000107959.8