Pregenerated sensors for FAM209 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027505Ensembl transcript IDs: ENSMUST00000029007.3
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | AAGATTCTGTCTAATCCGGAAGTGTCCGCCGCAAGGCACCTTCCCTaGGCTTTCCTTGGTTTTCTCCCTCATCGAAGAAAACATGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: KILSNPEVSAARHLP*AFLGFLPHRRKHEG Trigger: GCCTTCATGTTTTCTTCGATGAGGGAGAAAACCAAGGAAAGCCCAGGGAAGGTGCCTTGCGGCGGACACTTCCGGATTAGACAGAATCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS TCA 90 bp | TGGGTTAAAGTATTGAAAGTGAAGTCTTTGCTGGGGGAAATATTTTaGGCTTTCTTTGGTGGAGAGCGGAGCTGGCAGCCTCGGAGGCCA | + |
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Preference number: 5 (lower is better) Translates to: WVKVLKVKSLLGEIF*AFFGGERSWQPRRP Trigger: TGGCCTCCGAGGCTGCCAGCTCCGCTCTCCACCAAAGAAAGCTCAAAATATTTCCCCCAGCAAAGACTTCACTTTCAATACTTTAACCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS GCA 72 bp | GAGCGGAGCTGGCAGCCTCGGAGGCCAGGAGGATGCTaGTCCTTATTCTCGCCATCTCCTCGAAACTTCAGC | + |
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Preference number: 6 (lower is better) Translates to: ERSWQPRRPGGC*SLFSPSPRNFS Trigger: GCTGAAGTTTCGAGGAGATGGCGAGAATAAGGAGCAGCATCCTCCTGGCCTCCGAGGCTGCCAGCTCCGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS GCA 72 bp | GCTCTCTGGAACCTGCTGCCTGGAGTTACTGTTAGTTaGCATGGAGACCTTAAGGTTCCGCACCTTGGACAC | + |
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Preference number: 6 (lower is better) Translates to: ALWNLLPGVTVS*HGDLKVPHLGH Trigger: GTGTCCAAGGTGCGGAACCTTAAGGTCTCCATGGCAACTAACAGTAACTCCAGGCAGCAGGTTCCAGAGAGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS GCA 72 bp | ACATTATTGTACAGGTTCGTGGGGCTCTCTGGAACCTaGTGCCTGGAGTTACTGTTAGTTGCCATGGAGACC | + |
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Preference number: 6 (lower is better) Translates to: TLLYRFVGLSGT*CLELLLVAMET Trigger: GGTCTCCATGGCAACTAACAGTAACTCCAGGCAGCAGGTTCCAGAGAGCCCCACGAACCTGTACAATAATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS GCA 72 bp | TTATTGTACAGGTTCGTGGGGCTCTCTGGAACCTGCTaGCTGGAGTTACTGTTAGTTGCCATGGAGACCTTA | + |
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Preference number: 6 (lower is better) Translates to: LLYRFVGLSGTC*LELLLVAMETL Trigger: TAAGGTCTCCATGGCAACTAACAGTAACTCCAGGCAGCAGGTTCCAGAGAGCCCCACGAACCTGTACAATAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS TCA 72 bp | GGCTTTCCTTGGTTTTCTCCCTCATCGAAGAAAACATaGAGGCACAGGCACAAGAGACGCACAGAGACAAGA | + |
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Preference number: 6 (lower is better) Translates to: GFPWFSPSSKKT*RHRHKRRTETR Trigger: TCTTGTCTCTGTGCGTCTCTTGTGCCTGTGCCTTCATGTTTTCTTCGATGAGGGAGAAAACCAAGGAAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS TCA 72 bp | GTATTGAAAGTGAAGTCTTTGCTGGGGGAAATATTTTaGGCTTTCTTTGGTGGAGAGCGGAGCTGGCAGCCT | + |
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Preference number: 6 (lower is better) Translates to: VLKVKSLLGEIF*AFFGGERSWQP Trigger: AGGCTGCCAGCTCCGCTCTCCACCAAAGAAAGCTCAAAATATTTCCCCCAGCAAAGACTTCACTTTCAATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS CCA 72 bp | TATTGTGACATTATTGTACAGGTTCGTGGGGCTCTCTaGAACCTGCTGCCTGGAGTTACTGTTAGTTGCCAT | + |
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Preference number: 6 (lower is better) Translates to: YCDIIVQVRGAL*NLLPGVTVSCH Trigger: ATGGCAACTAACAGTAACTCCAGGCAGCAGGTTCCAGAGAGCCCCACGAACCTGTACAATAATGTCACAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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| CDS CAA 72 bp | AGTATTGAAAGTGAAGTCTTTGCTGGGGGAAATATTTaGAGCTTTCTTTGGTGGAGAGCGGAGCTGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SIESEVFAGGNI*SFLWWRAELAA Trigger: GGCTGCCAGCTCCGCTCTCCACCAAAGAAAGCTCAAAATATTTCCCCCAGCAAAGACTTCACTTTCAATACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029007.3 |
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