Pregenerated sensors for FAM204A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000057858Ensembl transcript IDs: ENSMUST00000065286.2, ENSMUST00000235293.2, ENSMUST00000237339.2, ENSMUST00000238054.2, ENSMUST00000238119.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACCACTGGGTCTCATTTaGGGACTGCTCACTGTGAGA | + |
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Preference number: 2 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQPLGLI*GLLTVR Trigger: TCTCACAGTGAGCAGTCCTCAAATGAGACCCAGTGG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235293.2 |
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| 3UTR-3UTR TCA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACTTTCGAGCAGCCTGTaGATTTTCAGCCTCCTTTTT | + |
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Preference number: 2 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQLSSSL*IFSLLF Trigger: AAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235293.2 |
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| 3UTR-3UTR CCA 90 bp | AGAAAAAGTACAGTCATGCTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGGCTTTAACAAACTTGTaGCAGGCAATTGCTTTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RKSTVMLRTDKEAKSLAMALTNL*QAIALA Trigger: TGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGC...CATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAGCATGACTGTACTTTTTCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000235293.2 |
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| 3UTR-3UTR CAA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACGAGTAGCCAGCTGGTaGCTGAGCTCCTCCGCCTTC | + |
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Preference number: 3 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQRVASW*LSSSAF Trigger: GAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000235293.2 |
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| 3UTR-3UTR CAA 90 bp | GGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAACACAAAACTGATTCCCACTGGGTCTCATTaGAGGACTGCTCACTGTGAG | + |
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Preference number: 3 (lower is better) Translates to: GSQVTGYARPNRSNTKLIPTGSH*RTAHCE Trigger: CTCACAGTGAGCAGTCCTCAAATGAGACCCAGTGGG...AATCAGTTTTGTGTTTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235293.2 |
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| 3UTR TCA 72 bp | CAATCCAAAACAAGACAATCCAAAGTTATGTTATCTTaGGTTACAACTGTCTGTCTAGCACAATCAGACCAT | + |
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Preference number: 3 (lower is better) Translates to: QSKTRQSKVMLS*VTTVCLAQSDH Trigger: ATGGTCTGATTGTGCTAGACAGACAGTTGTAACTCAAGATAACATAACTTTGGATTGTCTTGTTTTGGATTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS-3UTR CCA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACTCTGTCTCCGTCTCTaGCTGGCCTGTCGGGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQLCLRL*LACREV Trigger: GACTTCCCGACAGGCCAGCCAGAGACGGAGACAGAG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR CCA 90 bp | GGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAACACAAAACTGATTCTCTGTCTCCGTCTCTaGCTGGCCTGTCGGGAAGTC | + |
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Preference number: 4 (lower is better) Translates to: GSQVTGYARPNRSNTKLILCLRL*LACREV Trigger: GACTTCCCGACAGGCCAGCCAGAGACGGAGACAGAG...AATCAGTTTTGTGTTTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR GCA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACTGCTGGCTTCGTACTaGTGCCAGTCTTTCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQLLASY*CQSFHL Trigger: AAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAAGTACAGTCATGCTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTGGCTTCGTACTGCTaGCAGTCTTTCCATCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RKSTVMLRTDKEAKSLAMLASYC*QSFHLP Trigger: AGGAAGATGGAAAGACTGGCAGCAGTACGAAGCCAG...CATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAGCATGACTGTACTTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR GCA 90 bp | AGAAAAAGTACAGTCATGCTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTGCTGGCTTCGTACTaGTGCCAGTCTTTCCATCTT | + |
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Preference number: 4 (lower is better) Translates to: RKSTVMLRTDKEAKSLAMLLASY*CQSFHL Trigger: AAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAG...CATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAGCATGACTGTACTTTTTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR TCA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAGAGGACTGCTCACTGTaGGATTCCTTTTCATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQEDCSL*DSFSFF Trigger: GAAGAATGAAAAGGAATCTCACAGTGAGCAGTCCTC...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS-3UTR TCA 90 bp | AGAAAAAGTACAGTCATGCTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTTTCGAGCAGCCTGTaGATTTTCAGCCTCCTTTTT | + |
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Preference number: 4 (lower is better) Translates to: RKSTVMLRTDKEAKSLAMLSSSL*IFSLLF Trigger: AAAAAGGAGGCTGAAAATTCACAGGCTGCTCGAAAG...CATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAGCATGACTGTACTTTTTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS-3UTR CCA 90 bp | GGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAACACAAAACTGATTGCTTTAACAAACTTGTaGCAGGCAATTGCTTTGGCA | + |
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Preference number: 4 (lower is better) Translates to: GSQVTGYARPNRSNTKLIALTNL*QAIALA Trigger: TGCCAAAGCAATTGCCTGCCACAAGTTTGTTAAAGC...AATCAGTTTTGTGTTTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| 3UTR CAA 72 bp | CCAATCCAAAACAAGACAATCCAAAGTTATGTTATCTaGAGTTACAACTGTCTGTCTAGCACAATCAGACCA | + |
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Preference number: 4 (lower is better) Translates to: PIQNKTIQSYVI*SYNCLSSTIRP Trigger: TGGTCTGATTGTGCTAGACAGACAGTTGTAACTCAAGATAACATAACTTTGGATTGTCTTGTTTTGGATTGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS GCA 90 bp | CTGGCTGGCCTGTCGGGAAGTCTGACACTGCTGGCTTCGTACTGCTaGCAGTCTTTCCATCTTCCTGTAAATTATGTTCTGAAGGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: LAGLSGSLTLLASYC*QSFHLPVNYVLKVL Trigger: CAGAACCTTCAGAACATAATTTACAGGAAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAGTGTCAGACTTCCCGACAGGCCAGCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 ENSMUST00000237339.2 ENSMUST00000238054.2 ENSMUST00000238119.2 |
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| CDS-3UTR CAA 90 bp | GGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAACACAAAACTGATTCGAGTAGCCAGCTGGTaGCTGAGCTCCTCCGCCTTC | + |
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Preference number: 5 (lower is better) Translates to: GSQVTGYARPNRSNTKLIRVASW*LSSSAF Trigger: GAAGGCGGAGGAGCTCAGCAACCAGCTGGCTACTCG...AATCAGTTTTGTGTTTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS GCA 90 bp | TCTCTGGCTGGCCTGTCGGGAAGTCTGACACTGCTGGCTTCGTACTaGTGCCAGTCTTTCCATCTTCCTGTAAATTATGTTCTGAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: SLAGLSGSLTLLASY*CQSFHLPVNYVLKV Trigger: AACCTTCAGAACATAATTTACAGGAAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAGTGTCAGACTTCCCGACAGGCCAGCCAGAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 ENSMUST00000237339.2 ENSMUST00000238054.2 ENSMUST00000238119.2 |
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| CDS-3UTR CAA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAACCCACTGGGTCTCATTaGAGGACTGCTCACTGTGAG | + |
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Preference number: 5 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQPTGSH*RTAHCE Trigger: CTCACAGTGAGCAGTCCTCAAATGAGACCCAGTGGG...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065286.2 |
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| CDS-3UTR CAA 90 bp | CTAAGAACAGATAAGGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAATCTGGGTTCTCTAGTTaGATTTCATCCTCAGAATCT | + |
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Preference number: 5 (lower is better) Translates to: LRTDKEAKSLAMLDQTDQSGFSS*ISSSES Trigger: AGATTCTGAGGATGAAATCAAACTAGAGAACCCAGA...TTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCCTTATCTGTTCTTAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS-3UTR CAA 90 bp | GGAAGCCAAGTCACTGGCTATGCTAGACCAAACAGATCAAACACAAAACTGATTTCTGGGTTCTCTAGTTaGATTTCATCCTCAGAATCT | + |
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Preference number: 5 (lower is better) Translates to: GSQVTGYARPNRSNTKLISGFSS*ISSSES Trigger: AGATTCTGAGGATGAAATCAAACTAGAGAACCCAGA...AATCAGTTTTGTGTTTGATCTGTTTGGTCTAGCATAGCCAGTGACTTGGCTTCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 |
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| CDS CCA 72 bp | TATGCATCCGCATCAGCCTCTGTCTCCGTCTCTGGCTaGCCTGTCGGGAAGTCTGACACTGCTGGCTTCGTA | + |
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Preference number: 6 (lower is better) Translates to: YASASASVSVSG*PVGKSDTAGFV Trigger: TACGAAGCCAGCAGTGTCAGACTTCCCGACAGGCCAGCCAGAGACGGAGACAGAGGCTGATGCGGATGCATA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 ENSMUST00000237339.2 ENSMUST00000238054.2 ENSMUST00000238119.2 |
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| CDS GCA 72 bp | GGCCTGTCGGGAAGTCTGACACTGCTGGCTTCGTACTaGTGCCAGTCTTTCCATCTTCCTGTAAATTATGTT | + |
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Preference number: 6 (lower is better) Translates to: GLSGSLTLLASY*CQSFHLPVNYV Trigger: AACATAATTTACAGGAAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAGTGTCAGACTTCCCGACAGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 ENSMUST00000237339.2 ENSMUST00000238054.2 ENSMUST00000238119.2 |
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| CDS GCA 72 bp | CTGTCGGGAAGTCTGACACTGCTGGCTTCGTACTGCTaGCAGTCTTTCCATCTTCCTGTAAATTATGTTCTG | + |
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Preference number: 6 (lower is better) Translates to: LSGSLTLLASYC*QSFHLPVNYVL Trigger: CAGAACATAATTTACAGGAAGATGGAAAGACTGGCAGCAGTACGAAGCCAGCAGTGTCAGACTTCCCGACAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000065286.2 ENSMUST00000235293.2 ENSMUST00000237339.2 ENSMUST00000238054.2 ENSMUST00000238119.2 |
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