Pregenerated sensors for FAM187A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075510Ensembl transcript IDs: ENSMUST00000100369.4
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGCCCATCAAAGTCTGTaGGCACCGTGGTGCGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNAHQSL*APWCAC Trigger: GCAAGCGCACCACGGTGCTCACAGACTTTGATGGGC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR GCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGCACCCAGGGCCGGCTaGCCAGTTTGGACACATAAC | + |
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Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNAPRAG*PVWTHN Trigger: GTTATGTGTCCAAACTGGGCAGCCGGCCCTGGGTGC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGGTCACTCAGCTGGGTaGAGCGGATGTGGAGATGGT | + |
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Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNGHSAG*SGCGDG Trigger: ACCATCTCCACATCCGCTTCACCCAGCTGAGTGACC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR GCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTTCCCAGGCCACAGCATaGTCTGGTCGGGCCCCGGGA | + |
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Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCSQATA*SGRAPG Trigger: TCCCGGGGCCCGACCAGAGCATGCTGTGGCCTGGGA...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACCCCATAGTACTCATCTaGCAACGGCTCCTGGGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNPIVLI*QRLLGH Trigger: ATGGCCCAGGAGCCGTTGCCAGATGAGTACTATGGG...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGCTGATGGAACTGAATaGGAACCTGAGGCACCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNADGTE*EPEAPR Trigger: CCTGGGTGCCTCAGGTTCCCATTCAGTTCCATCAGC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGGACAACAGCGAGATTaGCAACAGCAACGACAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNGQQRD*QQQRQR Trigger: CCTCTGTCGTTGCTGTTGCCAATCTCGCTGTTGTCC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGTCTTGTTCCTCTTCTaGCAGGACACTAGACAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNVLFLF*QDTRQL Trigger: GAGCTGTCTAGTGTCCTGTCAGAAGAGGAACAAGAC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCCTGTGTCCTCTGGCTaGGCCCGGAAAACCAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCPVSSG*ARKTNR Trigger: CCTGTTGGTTTTCCGGGCCCAGCCAGAGGACACAGG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAGCGGATGTGGAGATaGTTGCCGTGGTCGATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNKRMWR*LPWSMK Trigger: TTTCATCGACCACGGCAACCATCTCCACATCCGCTT...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | CGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGGGTGAAGCGGATGTaGAGATGGTTGCCGTGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: RVPAQGAHHKRLVSFNKHWVKRM*RWLPWS Trigger: CGACCACGGCAACCATCTCCACATCCGCTTCACCCA...ATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCCCCGGTCACTCAGCTaGGTGAAGCGGATGTGGAGA | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCPRSLS*VKRMWR Trigger: TCTCCACATCCGCTTCACCCAGCTGAGTGACCGGGG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | CGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTCCTCGGGTTTGCAGTaGCAGGGAAGCTCAAAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: RVPAQGAHHKRLVSFNKHSSGLQ*QGSSKL Trigger: GAGCTTTGAGCTTCCCTGTCACTGCAAACCCGAGGA...ATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | CGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATGGGCAAGGTGTCCTTTaGAAAACGCTCTCCTTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: RVPAQGAHHKRLVSFNKHGQGVL*KTLSFS Trigger: GGAGAAGGAGAGCGTTTTTCAAAGGACACCTTGCCC...ATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | CGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATGGTTGCCGTGGTCGATaGAAACTCTCATGGACCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RVPAQGAHHKRLVSFNKHGCRGR*KLSWTC Trigger: ACAGGTCCATGAGAGTTTTCATCGACCACGGCAACC...ATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCCTGGGCCATGTCCTTaGAACTGGCCACTATTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCPGPCP*NWPLFL Trigger: AAGAAATAGTGGCCAGTTTCAAGGACATGGCCCAGG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR GCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTAAACGTCCTCGGGTTTaGAGTGACAGGGAAGCTCAA | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCKRPRV*SDREAQ Trigger: TTGAGCTTCCCTGTCACTGCAAACCCGAGGACGTTT...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTGCCGGCTGCCCAGTTTaGACACATAACTGTAGATTG | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCAGCPV*THNCRL Trigger: CAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGC...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR TCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCAGCAACGACAGAGGTaGATGGTGATGAAGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCQQRQR*MVMKKM Trigger: CATCTTCTTCATCACCATTCACCTCTGTCGTTGCTG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR GCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTGTAATACCAGACCACTaGAGAAACGTCCTCGGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCVIPDH*RNVLGF Trigger: AAACCCGAGGACGTTTCTGCAGTGGTCTGGTATTAC...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR GCA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACCCACTATTTCTTTATTaGTCTGGATGTCCACATCAT | + |
|
Preference number: 4 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNPLFLY*SGCPHH Trigger: ATGATGTGGACATCCAGAGCAATAAAGAAATAGTGG...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CCA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCGGGTGTGTGATATTTaGTCTGGAGATGCAGTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCRVCDI*SGDAVS Trigger: GGAAACTGCATCTCCAGACCAAATATCACACACCCG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS TCA 90 bp | ATGCGGATGCTGAATCGCACCAGCATGCTGCTGCCTACGCGAACGTaGGCGGCTTCGGTGAGCAACCGCCCATCAAAGTCTGTGAGCACC | + |
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Preference number: 5 (lower is better) Translates to: MRMLNRTSMLLPTRT*AASVSNRPSKSVST Trigger: GGTGCTCACAGACTTTGATGGGCGGTTGCTCACCGAAGCCGCTCACGTTCGCGTAGGCAGCAGCATGCTGGTGCGATTCAGCATCCGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAGGGGCTGGTTGTCCTaGTCCCAGGCCACAGCATGC | + |
|
Preference number: 5 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNRGWLS*SQATAC Trigger: GCATGCTGTGGCCTGGGACAAGGACAACCAGCCCCT...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 90 bp | AGGCACCCAGGGCCGGCTGCCCAGTTTGGACACATAACTGTAGATTaGCAGCACACCCTTCCGGGTCTTGTTCCTCTTCTGACAGGACAC | + |
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Preference number: 5 (lower is better) Translates to: RHPGPAAQFGHITVD*QHTLPGLVPLLTGH Trigger: GTGTCCTGTCAGAAGAGGAACAAGACCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCCTGGGTGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 90 bp | GGAACTGAATGGGAACCTGAGGCACCCAGGGCCGGCTGCCCAGTTTaGACACATAACTGTAGATTGCCAGCACACCCTTCCGGGTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: GTEWEPEAPRAGCPV*THNCRLPAHPSGSC Trigger: ACAAGACCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCCTGGGTGCCTCAGGTTCCCATTCAGTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 90 bp | TCTGCTGATGGAACTGAATGGGAACCTGAGGCACCCAGGGCCGGCTaGCCAGTTTGGACACATAACTGTAGATTGCCAGCACACCCTTCC | + |
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Preference number: 5 (lower is better) Translates to: SADGTEWEPEAPRAG*PVWTHNCRLPAHPS Trigger: GGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCCTGGGTGCCTCAGGTTCCCATTCAGTTCCATCAGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 90 bp | CGTGGTGCGCTTGCTCCCCAAGTGCTTCTGGTAATACCAGACCACTaGAGAAACGTCCTCGGGTTTGCAGTGACAGGGAAGCTCAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: RGALAPQVLLVIPDH*RNVLGFAVTGKLKA Trigger: AGCTTTGAGCTTCCCTGTCACTGCAAACCCGAGGACGTTTCTGCAGTGGTCTGGTATTACCAGAAGCACTTGGGGAGCAAGCGCACCACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 90 bp | AGGACACTAGACAGCTCTGAAACTGCAGCTCGGGTGTGTGATATTTaGTCTGGAGATGCAGTTTCCACGGCACAGCCCCAGAGCCACAGG | + |
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Preference number: 5 (lower is better) Translates to: RTLDSSETAARVCDI*SGDAVSTAQPQSHR Trigger: CCTGTGGCTCTGGGGCTGTGCCGTGGAAACTGCATCTCCAGACCAAATATCACACACCCGAGCTGCAGTTTCAGAGCTGTCTAGTGTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACGGGACAACAGCGAGATaGGCAACAGCAACGACAGAG | + |
|
Preference number: 5 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNGTTAR*ATATTE Trigger: CTCTGTCGTTGCTGTTGCCAATCTCGCTGTTGTCCC...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | CTGTCGCGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACACACATAACTGTAGATaGCCAGCACACCCTTCCGGG | + |
|
Preference number: 5 (lower is better) Translates to: LSRVPAQGAHHKRLVSFNTHNCR*PAHPSG Trigger: CCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGT...GTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACGCGACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 90 bp | CTCCCAGAAAGTGGTAAAGACATGGAGGGCCCCATAGTACTCATCTaGCAACGGCTCCTGGGCCATGTCCTTGAAACTGGCCACTATTTC | + |
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Preference number: 5 (lower is better) Translates to: LPESGKDMEGPIVLI*QRLLGHVLETGHYF Trigger: GAAATAGTGGCCAGTTTCAAGGACATGGCCCAGGAGCCGTTGCCAGATGAGTACTATGGGGCCCTCCATGTCTTTACCACTTTCTGGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 90 bp | AGTGCTTCTGGTAATACCAGACCACTGCAGAAACGTCCTCGGGTTTaGAGTGACAGGGAAGCTCAAAGCTCATATCAGCCAGGTAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: SASGNTRPLQKRPRV*SDREAQSSYQPGRQ Trigger: CTGCCTACCTGGCTGATATGAGCTTTGAGCTTCCCTGTCACTGCAAACCCGAGGACGTTTCTGCAGTGGTCTGGTATTACCAGAAGCACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS TCA 90 bp | GGGCCCCATAGTACTCATCTGGCAACGGCTCCTGGGCCATGTCCTTaGAACTGGCCACTATTTCTTTATTGCTCTGGATGTCCACATCAT | + |
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Preference number: 5 (lower is better) Translates to: GPHSTHLATAPGPCP*NWPLFLYCSGCPHH Trigger: ATGATGTGGACATCCAGAGCAATAAAGAAATAGTGGCCAGTTTCAAGGACATGGCCCAGGAGCCGTTGCCAGATGAGTACTATGGGGCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | CGTGTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTCCTGGGCCATGTCCTaGAAACTGGCCACTATTTCT | + |
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Preference number: 5 (lower is better) Translates to: RVPAQGAHHKRLVSFNKHSWAMS*KLATIS Trigger: AGAAATAGTGGCCAGTTTCAAGGACATGGCCCAGGA...ATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGACACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTCGGATGTGGAGATGGTaGCCGTGGTCGATGAAAACT | + |
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Preference number: 5 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCRMWRW*PWSMKT Trigger: AGTTTTCATCGACCACGGCAACCATCTCCACATCCG...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS-3UTR CAA 90 bp | GTCCCAGCCCAAGGTGCCCACCATAAGCGTCTGGTATCATTTAACAAACATTGTGCCACTATTTCTTTATaGCTCTGGATGTCCACATCA | + |
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Preference number: 5 (lower is better) Translates to: VPAQGAHHKRLVSFNKHCATISL*LWMSTS Trigger: TGATGTGGACATCCAGAGCAATAAAGAAATAGTGGC...ACAATGTTTGTTAAATGATACCAGACGCTTATGGTGGGCACCTTGGGCTGGGAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 72 bp | GGGCTGGTTGTCCTTGTCCCAGGCCACAGCATGCTCTaGTCGGGCCCCGGGACAGGAGATGATGAGGCCGTG | + |
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Preference number: 6 (lower is better) Translates to: GLVVLVPGHSML*SGPGTGDDEAV Trigger: CACGGCCTCATCATCTCCTGTCCCGGGGCCCGACCAGAGCATGCTGTGGCCTGGGACAAGGACAACCAGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS TCA 72 bp | CTGAATCGCACCAGCATGCTGCTGCCTACGCGAACGTaGGCGGCTTCGGTGAGCAACCGCCCATCAAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: LNRTSMLLPTRT*AASVSNRPSKS Trigger: AGACTTTGATGGGCGGTTGCTCACCGAAGCCGCTCACGTTCGCGTAGGCAGCAGCATGCTGGTGCGATTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 90 bp | GAGGCACCCAGGGCCGGCTGCCCAGTTTGGACACATAACTGTAGATaGCCAGCACACCCTTCCGGGTCTTGTTCCTCTTCTGACAGGACA | + |
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Preference number: 6 (lower is better) Translates to: EAPRAGCPVWTHNCR*PAHPSGSCSSSDRT Trigger: TGTCCTGTCAGAAGAGGAACAAGACCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCCTGGGTGCCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 72 bp | CCCCGGTCACTCAGCTGGGTGAAGCGGATGTGGAGATaGTTGCCGTGGTCGATGAAAACTCTCATGGACCTG | + |
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Preference number: 6 (lower is better) Translates to: PRSLSWVKRMWR*LPWSMKTLMDL Trigger: CAGGTCCATGAGAGTTTTCATCGACCACGGCAACCATCTCCACATCCGCTTCACCCAGCTGAGTGACCGGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 72 bp | GGGCCGGCTGCCCAGTTTGGACACATAACTGTAGATTaGCAGCACACCCTTCCGGGTCTTGTTCCTCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: GPAAQFGHITVD*QHTLPGLVPLL Trigger: CAGAAGAGGAACAAGACCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 72 bp | CGGGTGCCACAAAAATATAGGCCTGTGTCCTCTGGCTaGGCCCGGAAAACCAACAGGCTGAACATGCGGATG | + |
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Preference number: 6 (lower is better) Translates to: RVPQKYRPVSSG*ARKTNRLNMRM Trigger: CATCCGCATGTTCAGCCTGTTGGTTTTCCGGGCCCAGCCAGAGGACACAGGCCTATATTTTTGTGGCACCCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 72 bp | AGTGGTAAAGACATGGAGGGCCCCATAGTACTCATCTaGCAACGGCTCCTGGGCCATGTCCTTGAAACTGGC | + |
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Preference number: 6 (lower is better) Translates to: SGKDMEGPIVLI*QRLLGHVLETG Trigger: GCCAGTTTCAAGGACATGGCCCAGGAGCCGTTGCCAGATGAGTACTATGGGGCCCTCCATGTCTTTACCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CCA 72 bp | GACAGCTCTGAAACTGCAGCTCGGGTGTGTGATATTTaGTCTGGAGATGCAGTTTCCACGGCACAGCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: DSSETAARVCDI*SGDAVSTAQPQ Trigger: CTGGGGCTGTGCCGTGGAAACTGCATCTCCAGACCAAATATCACACACCCGAGCTGCAGTTTCAGAGCTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 72 bp | AGGGCCGGCTGCCCAGTTTGGACACATAACTGTAGATaGCCAGCACACCCTTCCGGGTCTTGTTCCTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: RAGCPVWTHNCR*PAHPSGSCSSS Trigger: AGAAGAGGAACAAGACCCGGAAGGGTGTGCTGGCAATCTACAGTTATGTGTCCAAACTGGGCAGCCGGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 72 bp | CGGTCACTCAGCTGGGTGAAGCGGATGTGGAGATGGTaGCCGTGGTCGATGAAAACTCTCATGGACCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: RSLSWVKRMWRW*PWSMKTLMDLF Trigger: GAACAGGTCCATGAGAGTTTTCATCGACCACGGCAACCATCTCCACATCCGCTTCACCCAGCTGAGTGACCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 72 bp | CTTGCTCCCCAAGTGCTTCTGGTAATACCAGACCACTaGAGAAACGTCCTCGGGTTTGCAGTGACAGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LAPQVLLVIPDH*RNVLGFAVTGK Trigger: CTTCCCTGTCACTGCAAACCCGAGGACGTTTCTGCAGTGGTCTGGTATTACCAGAAGCACTTGGGGAGCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS GCA 72 bp | GGTAATACCAGACCACTGCAGAAACGTCCTCGGGTTTaGAGTGACAGGGAAGCTCAAAGCTCATATCAGCCA | + |
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Preference number: 6 (lower is better) Translates to: GNTRPLQKRPRV*SDREAQSSYQP Trigger: TGGCTGATATGAGCTTTGAGCTTCCCTGTCACTGCAAACCCGAGGACGTTTCTGCAGTGGTCTGGTATTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 90 bp | GTAGGCAGCGTTATCAAACACCAGGAAAGCAGGGCAAGGTGTCCTTaGAAAAACGCTCTCCTTCTCCACGATTTCAAAGGCCTGGAGACT | + |
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Preference number: 6 (lower is better) Translates to: VGSVIKHQESRARCP*KNALLLHDFKGLET Trigger: AGTCTCCAGGCCTTTGAAATCGTGGAGAAGGAGAGCGTTTTTCAAAGGACACCTTGCCCTGCTTTCCTGGTGTTTGATAACGCTGCCTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 72 bp | AAGGGTTTGGGCAGAGAAGTTGGGACAACAGCGAGATaGGCAACAGCAACGACAGAGGTGAATGGTGATGAA | + |
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Preference number: 6 (lower is better) Translates to: KGLGREVGTTAR*ATATTEVNGDE Trigger: TTCATCACCATTCACCTCTGTCGTTGCTGTTGCCAATCTCGCTGTTGTCCCAACTTCTCTGCCCAAACCCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS TCA 72 bp | AGTACTCATCTGGCAACGGCTCCTGGGCCATGTCCTTaGAACTGGCCACTATTTCTTTATTGCTCTGGATGT | + |
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Preference number: 6 (lower is better) Translates to: STHLATAPGPCP*NWPLFLYCSGC Trigger: ACATCCAGAGCAATAAAGAAATAGTGGCCAGTTTCAAGGACATGGCCCAGGAGCCGTTGCCAGATGAGTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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| CDS CAA 72 bp | GTTATCAAACACCAGGAAAGCAGGGCAAGGTGTCCTTaGAAAAACGCTCTCCTTCTCCACGATTTCAAAGGC | + |
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Preference number: 6 (lower is better) Translates to: VIKHQESRARCP*KNALLLHDFKG Trigger: GCCTTTGAAATCGTGGAGAAGGAGAGCGTTTTTCAAAGGACACCTTGCCCTGCTTTCCTGGTGTTTGATAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100369.4 |
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