Pregenerated sensors for FAM185A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047221Ensembl transcript IDs: ENSMUST00000056045.5
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTTAATGTTACAGTTGACATTTCTAAAGAAATGGAATCCATGAAGTaGCTCTCTAAAGCACACCGCTGTCAAAGTGCCCTGCACTTTCAT | + |
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Preference number: 1 (lower is better) Translates to: FNVTVDISKEMESMK*LSKAHRCQSALHFH Trigger: ATGAAAGTGCAGGGCACTTTGACAGCGGTGTGCTTTAGAGAGTCACTTCATGGATTCCATTTCTTTAGAAATGTCAACTGTAACATTAAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR GCA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGTGCCTGAAGAGGGGCTaGACTAGGAAGGTGAGCATG | + |
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Preference number: 2 (lower is better) Translates to: SADRTAALSHREVHPNPQCLKRG*TRKVSM Trigger: CATGCTCACCTTCCTAGTGCAGCCCCTCTTCAGGCA...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CCA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGTTTCCCTATAACTCTTaGCAGAGTTCTCCCCGCAGC | + |
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Preference number: 2 (lower is better) Translates to: SADRTAALSHREVHPNPQFPYNS*QSSPRS Trigger: GCTGCGGGGAGAACTCTGCCAAGAGTTATAGGGAAA...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR TCA 90 bp | GACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGAAGACCCAGACATTCAGGGCATaGGAGAAGGACTCTGTTTTG | + |
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Preference number: 2 (lower is better) Translates to: DRTAALSHREVHPNPQKTQTFRA*EKDSVL Trigger: CAAAACAGAGTCCTTCTCTCATGCCCTGAATGTCTG...GGTCTTCTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR GCA 90 bp | CTGTTTTGCCTGAAGAGGGGCTGCACTAGGAAGGTGAGCATGTGGTTGTCTTTAGTAGCACTGTTCTCTTaGCCCCATCCAAGGTTCTGC | + |
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Preference number: 2 (lower is better) Translates to: LFCLKRGCTRKVSMWLSLVALFS*PHPRFC Trigger: GCAGAACCTTGGATGGGGGCAAGAGAACAGTGCTAC...TAAAGACAACCACATGCTCACCTTCCTAGTGCAGCCCCTCTTCAGGCAAAACAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR GCA 90 bp | GAGGGACATAGTAAGAGGGAAGTCTTTCCCATGGGAATTCCGATACCAGGAATCCCATTGCATTTGGGCTaGGAGGCATTCCTTTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: EGHSKREVFPMGIPIPGIPLHLG*EAFLCQ Trigger: CTGGCAAAGGAATGCCTCGCAGCCCAAATGCAATGG...GATTCCTGGTATCGGAATTCCCATGGGAAAGACTTCCCTCTTACTATGTCCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR TCA 90 bp | GACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGAAGACCATTTTATTTCTTCGGTaGAGAAGCGTGAGGAAATCT | + |
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Preference number: 2 (lower is better) Translates to: DRTAALSHREVHPNPQKTILFLR*RSVRKS Trigger: AGATTTCCTCACGCTTCTTCACCGAAGAAATAAAAT...GGTCTTCTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR TCA 90 bp | TCCGGTGAGGGAACGCTATCTGAAGTTATTAAATCTGGGGTAGCACTGTTCTCTCACAGTGTACAGCGTTaGTACTGTTTGTGGTTTCAG | + |
|
Preference number: 2 (lower is better) Translates to: SGEGTLSEVIKSGVALFSHSVQR*YCLWFQ Trigger: CTGAAACCACAAACAGTATCAACGCTGTACACTGTG...AGAGAACAGTGCTACCCCAGATTTAATAACTTCAGATAGCGTTCCCTCACCGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CCA 90 bp | GAGGGACATAGTAAGAGGGAAGTCTTTCCCATGGGAATTCCGATACCAGGAATCTGTTTCTATGAACACTaGCGTCTGCTTGTTAGTCCA | + |
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Preference number: 2 (lower is better) Translates to: EGHSKREVFPMGIPIPGICFYEH*RLLVSP Trigger: TGGACTAACAAGCAGACGCCAGTGTTCATAGAAACA...GATTCCTGGTATCGGAATTCCCATGGGAAAGACTTCCCTCTTACTATGTCCCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGGAGAAGGACTCTGTTTaGCCTGAAGAGGGGCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: SADRTAALSHREVHPNPQEKDSV*PEEGLH Trigger: GTGCAGCCCCTCTTCAGGCAAAACAGAGTCCTTCTC...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR GCA 72 bp | GTCAGACATTCAGGGCATGAGAGAAGGACTCTGTTTTaGCTGAAGAGGGGCTGCACTAGGAAGGTGAGCATG | + |
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Preference number: 3 (lower is better) Translates to: VRHSGHERRTLF*LKRGCTRKVSM Trigger: CATGCTCACCTTCCTAGTGCAGCCCCTCTTCAGGCAAAACAGAGTCCTTCTCTCATGCCCTGAATGTCTGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CAA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGAATTACATACACATTTaGCAGAAGCGCCTGAAACCA | + |
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Preference number: 3 (lower is better) Translates to: SADRTAALSHREVHPNPQNYIHI*QKRLKP Trigger: TGGTTTCAGGCGCTTCTGCAAAATGTGTATGTAATT...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR GCA 72 bp | CATGAGAGAAGGACTCTGTTTTGCCTGAAGAGGGGCTaGACTAGGAAGGTGAGCATGTGGTTGTCTTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: HERRTLFCLKRG*TRKVSMWLSLE Trigger: TTCTAAAGACAACCACATGCTCACCTTCCTAGTGCAGCCCCTCTTCAGGCAAAACAGAGTCCTTCTCTCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CAA 90 bp | TCCGGTGAGGGAACGCTATCTGAAGTTATTAAATCTGGGGTAGCACTGTTCTCTCCACAGTGTACAGCGTaGATACTGTTTGTGGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: SGEGTLSEVIKSGVALFSPQCTA*ILFVVS Trigger: TGAAACCACAAACAGTATCAACGCTGTACACTGTGG...AGAGAACAGTGCTACCCCAGATTTAATAACTTCAGATAGCGTTCCCTCACCGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR TCA 72 bp | AATAGCGGAATTACATACACATTTTGCAGAAGCGCCTaGAACCATTCACCAGAACTCACGGGCAACGCTGTT | + |
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Preference number: 3 (lower is better) Translates to: NSGITYTFCRSA*NHSPELTGNAV Trigger: AACAGCGTTGCCCGTGAGTTCTGGTGAATGGTTTCAGGCGCTTCTGCAAAATGTGTATGTAATTCCGCTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR-3UTR CAA 90 bp | GAGGGACATAGTAAGAGGGAAGTCTTTCCCATGGGAATTCCGATACCAGGAATCGTCCTAAGACATATCTaGGGGACTTTTATAATCTGG | + |
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Preference number: 3 (lower is better) Translates to: EGHSKREVFPMGIPIPGIVLRHI*GTFIIW Trigger: CCAGATTATAAAAGTCCCCAAGATATGTCTTAGGAC...GATTCCTGGTATCGGAATTCCCATGGGAAAGACTTCCCTCTTACTATGTCCCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR TCA 72 bp | ACAGTTGACATTTCTAAAGAAATGGAATCCATGAAGTaGCTCTCTAAAGCACACCGCTGTCAAAGTGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: TVDISKEMESMK*LSKAHRCQSAL Trigger: CAGGGCACTTTGACAGCGGTGTGCTTTAGAGAGTCACTTCATGGATTCCATTTCTTTAGAAATGTCAACTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | GACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGAAGACCGCTGATCCCTGCCGCTaGGCCCCACTGGAGCCGCAA | + |
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Preference number: 4 (lower is better) Translates to: DRTAALSHREVHPNPQKTADPCR*APLEPQ Trigger: TTGCGGCTCCAGTGGGGCGCAGCGGCAGGGATCAGC...GGTCTTCTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CCA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGCAGACTGCAGGATGCTaGTCCCCTGCTCAGTGTCGA | + |
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Preference number: 4 (lower is better) Translates to: SADRTAALSHREVHPNPQQTAGC*SPAQCR Trigger: TCGACACTGAGCAGGGGACCAGCATCCTGCAGTCTG...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGTCACATTCAATATTCTaGACCTTCACAGAGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: SADRTAALSHREVHPNPQSHSIF*TFTEPD Trigger: ATCTGGCTCTGTGAAGGTGCAGAATATTGAATGTGA...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | CTGTTTTGCCTGAAGAGGGGCTGCACTAGGAAGGTGAGCATGTGGTTGTCTTTAAGGATGCTGGTCCCCTaGTCAGTGTCGATTTTACAG | + |
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Preference number: 4 (lower is better) Translates to: LFCLKRGCTRKVSMWLSLRMLVP*SVSILQ Trigger: CTGTAAAATCGACACTGAGCAGGGGACCAGCATCCT...TAAAGACAACCACATGCTCACCTTCCTAGTGCAGCCCCTCTTCAGGCAAAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR TCA 90 bp | GCAAAAACCCCACAGTGTACAGCGTTGATACTGTTTGTGGTTTCAGGTATCACTGATCAGCATCATACTTaGCCTGCAGGCTGTCCAGGC | + |
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Preference number: 4 (lower is better) Translates to: AKTPQCTALILFVVSGITDQHHT*PAGCPG Trigger: GCCTGGACAGCCTGCAGGTCAAGTATGATGCTGATC...AGTGATACCTGAAACCACAAACAGTATCAACGCTGTACACTGTGGGGTTTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | GAAGCCACAGAGTGCTTTAGGAAAAAGGTAAACGTTCTCAACTTAGTAAGCAAAGCATCATACTTGACCTaGAGGCTGTCCAGGCCGCGC | + |
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Preference number: 4 (lower is better) Translates to: EATECFRKKVNVLNLVSKASYLT*RLSRPR Trigger: GCGCGGCCTGGACAGCCTGCAGGTCAAGTATGATGC...TTTGCTTACTAAGTTGAGAACGTTTACCTTTTTCCTAAAGCACTCTGTGGCTTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CCA 90 bp | GAGGGACATAGTAAGAGGGAAGTCTTTCCCATGGGAATTCCGATACCAGGAATCAGCTTACAGTGCCTTTaGGGGCAATGGCATTTATCC | + |
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Preference number: 4 (lower is better) Translates to: EGHSKREVFPMGIPIPGISLQCL*GQWHLS Trigger: GGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCT...GATTCCTGGTATCGGAATTCCCATGGGAAAGACTTCCCTCTTACTATGTCCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR TCA 90 bp | GCAAAAACCCCACAGTGTACAGCGTTGATACTGTTTGTGGTTTCAGGTATCACTTCGTGTTTGCTTGCTTaGTTCATGAGTCCTGTAACC | + |
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Preference number: 4 (lower is better) Translates to: AKTPQCTALILFVVSGITSCLLA*FMSPVT Trigger: GGTTACAGGACTCATGAATCAAGCAAGCAAACACGA...AGTGATACCTGAAACCACAAACAGTATCAACGCTGTACACTGTGGGGTTTTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | TCCGGTGAGGGAACGCTATCTGAAGTTATTAAATCTGGGGTAGCACTGTTCTCTTCTCTCGTGTTTGCTTaGTTGATTCATGAGTCCTGT | + |
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Preference number: 4 (lower is better) Translates to: SGEGTLSEVIKSGVALFSSLVFA*LIHESC Trigger: ACAGGACTCATGAATCAAGCAAGCAAACACGAGAGA...AGAGAACAGTGCTACCCCAGATTTAATAACTTCAGATAGCGTTCCCTCACCGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR TCA 90 bp | GCAAAAACCCCACAGTGTACAGCGTTGATACTGTTTGTGGTTTCAGGTATCACTTTAACACAACTTCCCTaGAGTTTCTCTATGCTCACA | + |
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Preference number: 4 (lower is better) Translates to: AKTPQCTALILFVVSGITLTQLP*SFSMLT Trigger: TGTGAGCATAGAGAAACTTCAGGGAAGTTGTGTTAA...AGTGATACCTGAAACCACAAACAGTATCAACGCTGTACACTGTGGGGTTTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR GCA 90 bp | GCAAAAACCCCACAGTGTACAGCGTTGATACTGTTTGTGGTTTCAGGTATCACTCCTGAAGTTTCTCTATaGTCACAGTACTTTTATCCG | + |
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Preference number: 4 (lower is better) Translates to: AKTPQCTALILFVVSGITPEVSL*SQYFYP Trigger: CGGATAAAAGTACTGTGAGCATAGAGAAACTTCAGG...AGTGATACCTGAAACCACAAACAGTATCAACGCTGTACACTGTGGGGTTTTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CCA 90 bp | GAAGCCACAGAGTGCTTTAGGAAAAAGGTAAACGTTCTCAACTTAGTAAGCAAATGCCTTTGGGGGCAATaGCATTTATCCATCTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: EATECFRKKVNVLNLVSKCLWGQ*HLSISR Trigger: ACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCA...TTTGCTTACTAAGTTGAGAACGTTTACCTTTTTCCTAAAGCACTCTGTGGCTTC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| 3UTR CAA 72 bp | TGGTTTCAGGTATCACTGGAGGTCCTAAGACATATCTaGGGGACTTTTATAATCTGGAACAGAACAACAGAC | + |
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Preference number: 4 (lower is better) Translates to: WFQVSLEVLRHI*GTFIIWNRTTD Trigger: GTCTGTTGTTCTGTTCCAGATTATAAAAGTCCCCAAGATATGTCTTAGGACCTCCAGTGATACCTGAAACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CAA 90 bp | TCAGCCGACAGAACAGCAGCTCTTTCCCACAGGGAGGTCCATCCTAACCCACAGAGAGAAGATGGGGCCTaGACAGCAATAGAACCTTCT | + |
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Preference number: 5 (lower is better) Translates to: SADRTAALSHREVHPNPQREDGA*TAIEPS Trigger: AGAAGGTTCTATTGCTGTCAAGGCCCCATCTTCTCT...CTGTGGGTTAGGATGGACCTCCCTGTGGGAAAGAGCTGCTGTTCTGTCGGCTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS GCA 90 bp | GCAGCTTCAGGGACTGAAACCAGCTCTGATGCTGGAAGCTTACAGTaGCTTTGGGGGCAATGGCATTTATCCATCTCTCGTGTTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: AASGTETSSDAGSLQ*LWGQWHLSISRVCL Trigger: CAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGAGCTGGTTTCAGTCCCTGAAGCTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CCA 90 bp | TCAGGGACTGAAACCAGCTCTGATGCTGGAAGCTTACAGTGCCTTTaGGGGCAATGGCATTTATCCATCTCTCGTGTTTGCTTGCTTGAT | + |
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Preference number: 5 (lower is better) Translates to: SGTETSSDAGSLQCL*GQWHLSISRVCLLD Trigger: ATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGAGCTGGTTTCAGTCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CAA 90 bp | CTTTCCCATGGGAATTCCGATACCAGGAATCCTGAGCTGACTCCAATGGCTGCCATCGCCTCCTTTGGTTaGAACATGCAACTTTTGACT | + |
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Preference number: 5 (lower is better) Translates to: LSHGNSDTRNPELTPMAAIASFG*NMQLLT Trigger: AGTCAAAAGTTGCATGTTCAAACCAAAGGAGGCGAT...GGCAGCCATTGGAGTCAGCTCAGGATTCCTGGTATCGGAATTCCCATGGGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS GCA 90 bp | AGTGCCTTTGGGGGCAATGGCATTTATCCATCTCTCGTGTTTGCTTaGTTGATTCATGAGTCCTGTAACCGTCACACCATCACCTTTACA | + |
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Preference number: 5 (lower is better) Translates to: SAFGGNGIYPSLVFA*LIHESCNRHTITFT Trigger: TGTAAAGGTGATGGTGTGACGGTTACAGGACTCATGAATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CAA 90 bp | TCCGGTGAGGGAACGCTATCTGAAGTTATTAAATCTGGGGTAGCACTGTTCTCTTTGAACATGCAACTTTaGACTCTTCACAGACTGCAG | + |
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Preference number: 5 (lower is better) Translates to: SGEGTLSEVIKSGVALFSLNMQL*TLHRLQ Trigger: CTGCAGTCTGTGAAGAGTCAAAAGTTGCATGTTCAA...AGAGAACAGTGCTACCCCAGATTTAATAACTTCAGATAGCGTTCCCTCACCGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS-3UTR CAA 90 bp | GAAGCCACAGAGTGCTTTAGGAAAAAGGTAAACGTTCTCAACTTAGTAAGCAAACTCGTGTTTGCTTGCTaGATTCATGAGTCCTGTAAC | + |
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Preference number: 5 (lower is better) Translates to: EATECFRKKVNVLNLVSKLVFAC*IHESCN Trigger: GTTACAGGACTCATGAATCAAGCAAGCAAACACGAG...TTTGCTTACTAAGTTGAGAACGTTTACCTTTTTCCTAAAGCACTCTGTGGCTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CCA 72 bp | AGTCATCGGGCGCTGATCCCTGCCGCTGCGCCCCACTaGAGCCGCAAGTCCGAGCCCCGAGAGCTCCGACCA | + |
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Preference number: 6 (lower is better) Translates to: SHRALIPAAAPH*SRKSEPRELRP Trigger: TGGTCGGAGCTCTCGGGGCTCGGACTTGCGGCTCCAGTGGGGCGCAGCGGCAGGGATCAGCGCCCGATGACT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS GCA 72 bp | GGGACTGAAACCAGCTCTGATGCTGGAAGCTTACAGTaGCTTTGGGGGCAATGGCATTTATCCATCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: GTETSSDAGSLQ*LWGQWHLSISR Trigger: ACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGAGCTGGTTTCAGTCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CCA 72 bp | GAAACCAGCTCTGATGCTGGAAGCTTACAGTGCCTTTaGGGGCAATGGCATTTATCCATCTCTCGTGTTTGC | + |
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Preference number: 6 (lower is better) Translates to: ETSSDAGSLQCL*GQWHLSISRVC Trigger: GCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGAGCTGGTTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS GCA 72 bp | GGGGGCAATGGCATTTATCCATCTCTCGTGTTTGCTTaGTTGATTCATGAGTCCTGTAACCGTCACACCATC | + |
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Preference number: 6 (lower is better) Translates to: GGNGIYPSLVFA*LIHESCNRHTI Trigger: GATGGTGTGACGGTTACAGGACTCATGAATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CAA 90 bp | GCCTTTGGGGGCAATGGCATTTATCCATCTCTCGTGTTTGCTTGCTaGATTCATGAGTCCTGTAACCGTCACACCATCACCTTTACAGTC | + |
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Preference number: 6 (lower is better) Translates to: AFGGNGIYPSLVFAC*IHESCNRHTITFTV Trigger: GACTGTAAAGGTGATGGTGTGACGGTTACAGGACTCATGAATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CCA 72 bp | TCTGATGCTGGAAGCTTACAGTGCCTTTGGGGGCAATaGCATTTATCCATCTCTCGTGTTTGCTTGCTTGAT | + |
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Preference number: 6 (lower is better) Translates to: SDAGSLQCLWGQ*HLSISRVCLLD Trigger: ATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCCCCCAAAGGCACTGTAAGCTTCCAGCATCAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CAA 72 bp | GGCAATGGCATTTATCCATCTCTCGTGTTTGCTTGCTaGATTCATGAGTCCTGTAACCGTCACACCATCACC | + |
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Preference number: 6 (lower is better) Translates to: GNGIYPSLVFAC*IHESCNRHTIT Trigger: GGTGATGGTGTGACGGTTACAGGACTCATGAATCAAGCAAGCAAACACGAGAGATGGATAAATGCCATTGCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CAA 90 bp | ATTTCCGTAAACCGTTCCACAACAGATCACATCGCCTCCTTTGGTTaGAACATGCAACTTTTGACTCTTCACAGACTGCAGGATGCTGGT | + |
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Preference number: 6 (lower is better) Translates to: ISVNRSTTDHIASFG*NMQLLTLHRLQDAG Trigger: ACCAGCATCCTGCAGTCTGTGAAGAGTCAAAAGTTGCATGTTCAAACCAAAGGAGGCGATGTGATCTGTTGTGGAACGGTTTACGGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS CAA 72 bp | AACCGTTCCACAACAGATCACATCGCCTCCTTTGGTTaGAACATGCAACTTTTGACTCTTCACAGACTGCAG | + |
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Preference number: 6 (lower is better) Translates to: NRSTTDHIASFG*NMQLLTLHRLQ Trigger: CTGCAGTCTGTGAAGAGTCAAAAGTTGCATGTTCAAACCAAAGGAGGCGATGTGATCTGTTGTGGAACGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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| CDS TCA 72 bp | AAACCATCCTCCGTAGATATATTAACACAACTTCCCTaGAGTTTCTCTATGCTCACAGTACTTTTATCCGAT | + |
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Preference number: 6 (lower is better) Translates to: KPSSVDILTQLP*SFSMLTVLLSD Trigger: ATCGGATAAAAGTACTGTGAGCATAGAGAAACTTCAGGGAAGTTGTGTTAATATATCTACGGAGGATGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000056045.5 |
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