Pregenerated sensors for FAM177A2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000094103Ensembl transcript IDs: ENSMUST00000177978.3
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTCAGTAGACATTGTTGTGATTCTTGCCTTTCCCCACGTGGGTTCTaGAGATCAGATTCAGGTTCTCGGCTTCCCAGCAAGCGCTTGTAC | + |
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Preference number: 1 (lower is better) Translates to: VSRHCCDSCLSPRGF*RSDSGSRLPSKRLY Trigger: GTACAAGCGCTTGCTGGGAAGCCGAGAACCTGAATCTGATCTCCAGAACCCACGTGGGGAAAGGCAAGAATCACAACAATGTCTACTGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 90 bp | ACCTTTGTAAAGGAGGAGCCTAGTAAGCGGAGAGATGGCCAAACCTaGTTCGCATCAGCGTCCCACTTACTACTGCTACTTCAAAATGGT | + |
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Preference number: 1 (lower is better) Translates to: TFVKEEPSKRRDGQT*FASASHLLLLLQNG Trigger: ACCATTTTGAAGTAGCAGTAGTAAGTGGGACGCTGATGCGAACCAGGTTTGGCCATCTCTCCGCTTACTAGGCTCCTCCTTTACAAAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 90 bp | ACATGGTCTCACTATGTAGCCCTGACTGGCCTGGAACTTGCTATGTaGACCAAGTTGGCCTTTAACCTTGAACTCTTAAGAGAGACACCT | + |
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Preference number: 1 (lower is better) Translates to: TWSHYVALTGLELAM*TKLAFNLELLRETP Trigger: AGGTGTCTCTCTTAAGAGTTCAAGGTTAAAGGCCAACTTGGTCCACATAGCAAGTTCCAGGCCAGTCAGGGCTACATAGTGAGACCATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR TCA 90 bp | GATGTCAGTCCAACTGAAACTTTTATTCAGTTAAAAGTTCACCTTTaGGTTGAAGTCCACTGGCAGGTCTCTACAATGTTCACCCACCCA | + |
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Preference number: 1 (lower is better) Translates to: DVSPTETFIQLKVHL*VEVHWQVSTMFTHP Trigger: TGGGTGGGTGAACATTGTAGAGACCTGCCAGTGGACTTCAACTCAAAGGTGAACTTTTAACTGAATAAAAGTTTCAGTTGGACTGACATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 90 bp | TCACATGCCTGTACAACACAGCAAATATCTTGCTTACTAGAGTGTTaGTTGCAGTCAGAACAATTTGAAAGTAATAGGACCAACTATTGG | + |
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Preference number: 1 (lower is better) Translates to: SHACTTQQISCLLEC*LQSEQFESNRTNYW Trigger: CCAATAGTTGGTCCTATTACTTTCAAATTGTTCTGACTGCAACCAACACTCTAGTAAGCAAGATATTTGCTGTGTTGTACAGGCATGTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR TCA 90 bp | GCAAAAAGGTCAGCACAGGAAGCTCAGGCCTGCATGGTGCCACCCTCCTGCTGTGCTGGTGAGTGTATGTaGAAGGAGCCCTGGGTTTGC | + |
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Preference number: 2 (lower is better) Translates to: AKRSAQEAQACMVPPSCCAGECM*KEPWVC Trigger: GCAAACCCAGGGCTCCTTTCACATACACTCACCAGC...ACAGCAGGAGGGTGGCACCATGCAGGCCTGAGCTTCCTGTGCTGACCTTTTTGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR TCA 90 bp | CGGAAGAGCAGTTGGGTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCACGAGTGCTTGGCTGGTaGGTGTATGTGAAAGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: RKSSWVLLSTEPSHQPSARVLGW*VYVKGA Trigger: GGCTCCTTTCACATACACTCACCAGCCAAGCACTCG...TGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GTTCTGGAGATCAGATTCAGGTTCTCGGCTTCCCAGCAAGCGCTTGTACCCAGCAAGGGTCTTGCTATGTaGTCTAGGCCAGCCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: VLEIRFRFSASQQALVPSKGLAM*SRPASS Trigger: GCTGGAGGCTGGCCTAGACCACATAGCAAGACCCTT...GCTGGGTACAAGCGCTTGCTGGGAAGCCGAGAACCTGAATCTGATCTCCAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CAA 90 bp | CACTATGTAGCCCTGACTGGCCTGGAACTTGCTATGTGGACCAAGTaGGCCTTTAACCTTGAACTCTTAAGAGAGACACCTGCCTCTGCC | + |
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Preference number: 2 (lower is better) Translates to: HYVALTGLELAMWTK*AFNLELLRETPASA Trigger: GGCAGAGGCAGGTGTCTCTCTTAAGAGTTCAAGGTTAAAGGCCAACTTGGTCCACATAGCAAGTTCCAGGCCAGTCAGGGCTACATAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACATCCCCACGTGGGTTCTaGAGATCAGATTCAGGTTCT | + |
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Preference number: 2 (lower is better) Translates to: VLLSTEPSHQPSADLDDTSPRGF*RSDSGS Trigger: AGAACCTGAATCTGATCTCCAGAACCCACGTGGGGA...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GGTCTTCAAGAAGATTGGGGACAGGAGACTTCCTATCAGAGTAGCACCATTGCATTGCCTTTCCCCACGTaGGTTCTGGAGATCAGATTC | + |
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Preference number: 2 (lower is better) Translates to: GLQEDWGQETSYQSSTIALPFPT*VLEIRF Trigger: GAATCTGATCTCCAGAACCCACGTGGGGAAAGGCAA...TGCAATGGTGCTACTCTGATAGGAAGTCTCCTGTCCCCAATCTTCTTGAAGACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACAACTAGTGTCAGTTTGTaGTCAGAGCAAGTCAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: VLLSTEPSHQPSADLDDTTSVSL*SEQVSS Trigger: TGAACTGACTTGCTCTGATCACAAACTGACACTAGT...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACATTAAAAGTTCACCTTTaGGTTGAAGTCCACTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: VLLSTEPSHQPSADLDDTLKVHL*VEVHWQ Trigger: CTGCCAGTGGACTTCAACTCAAAGGTGAACTTTTAA...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | TTGTTTTTGTATTTCTTGTGTGTGCACACCAGAGCACACATGGAGGTCAGTAGATTTGCTCCTTGGCATTaGGGGTGGGAAATGGGGGTC | + |
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Preference number: 2 (lower is better) Translates to: LFLYFLCVHTRAHMEVSRFAPWH*GWEMGV Trigger: GACCCCCATTTCCCACCCCCAATGCCAAGGAGCAAA...TCTACTGACCTCCATGTGTGCTCTGGTGTGCACACACAAGAAATACAAAAACAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | TTGTTTTTGTATTTCTTGTGTGTGCACACCAGAGCACACATGGAGGTCAGTAGAGAAGCTAGTCACCTGTaGACCACTCACCTTCACCTC | + |
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Preference number: 2 (lower is better) Translates to: LFLYFLCVHTRAHMEVSREASHL*TTHLHL Trigger: GAGGTGAAGGTGAGTGGTCCACAGGTGACTAGCTTC...TCTACTGACCTCCATGTGTGCTCTGGTGTGCACACACAAGAAATACAAAAACAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | TTGCTGGGATTTGAACTTTGGTCCTTCGGAAGAGCAGTTGGGTGCTCTTATCCAGTGCACTGCCATACGTaGCTGTGGTCAGTATTTATA | + |
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Preference number: 2 (lower is better) Translates to: LLGFELWSFGRAVGCSYPVHCHT*LWSVFI Trigger: TATAAATACTGACCACAGCCACGTATGGCAGTGCAC...TGGATAAGAGCACCCAACTGCTCTTCCGAAGGACCAAAGTTCAAATCCCAGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR TCA 90 bp | TTGTTTTTGTATTTCTTGTGTGTGCACACCAGAGCACACATGGAGGTCAGTAGAAGTTCACCTTTGAGTTaGAGTCCACTGGCAGGTCTC | + |
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Preference number: 2 (lower is better) Translates to: LFLYFLCVHTRAHMEVSRSSPLS*SPLAGL Trigger: GAGACCTGCCAGTGGACTTCAACTCAAAGGTGAACT...TCTACTGACCTCCATGTGTGCTCTGGTGTGCACACACAAGAAATACAAAAACAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACATGCCATACGTGGCTGTaGTCAGTATTTATAAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: VLLSTEPSHQPSADLDDTCHTWL*SVFIKR Trigger: TCTTTTTATAAATACTGACCACAGCCACGTATGGCA...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACATGGAATTACAATATTTaGTCTTCAAGAAGATTGGGG | + |
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Preference number: 2 (lower is better) Translates to: VLLSTEPSHQPSADLDDTWNYNI*SSRRLG Trigger: CCCCAATCTTCTTGAAGACCAAATATTGTAATTCCA...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CAA 90 bp | CATGCCTGTACAACACAGCAAATATCTTGCTTACTAGAGTGTTGGTaGCAGTCAGAACAATTTGAAAGTAATAGGACCAACTATTGGTTT | + |
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Preference number: 2 (lower is better) Translates to: HACTTQQISCLLECW*QSEQFESNRTNYWF Trigger: AAACCAATAGTTGGTCCTATTACTTTCAAATTGTTCTGACTGCAACCAACACTCTAGTAAGCAAGATATTTGCTGTGTTGTACAGGCATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CCA 90 bp | GGTCTCTACAATGTTCACCCACCCATGTTTTCATTGTATACACATTTAAGGTGGTGGTACTTAGAAGGCTaGTTTATAACCATTTGTTTC | + |
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Preference number: 2 (lower is better) Translates to: GLYNVHPPMFSLYTHLRWWYLEG*FITICF Trigger: GAAACAAATGGTTATAAACCAGCCTTCTAAGTACCA...CCACCTTAAATGTGTATACAATGAAAACATGGGTGGGTGAACATTGTAGAGACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | CGGAAGAGCAGTTGGGTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCACCCTGGGTTTGCTCCTaGGCATTGGGGGTGGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: RKSSWVLLSTEPSHQPSAPWVCS*ALGVGN Trigger: ATTTCCCACCCCCAATGCCAAGGAGCAAACCCAGGG...TGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | CAGCAAAAAGGTCAGCACAGGAAGCTCAGGCCTGCATaGTGCCACCCTCCTGCTGTGATCACAGGTCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: QQKGQHRKLRPA*CHPPAVITGLS Trigger: GCTCAGACCTGTGATCACAGCAGGAGGGTGGCACCATGCAGGCCTGAGCTTCCTGTGCTGACCTTTTTGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | CAAGCAGCAAAAAGGTCAGCACAGGAAGCTCAGGCCTaGATGGTGCCACCCTCCTGCTGTGATCACAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: QAAKRSAQEAQA*MVPPSCCDHRS Trigger: AGACCTGTGATCACAGCAGGAGGGTGGCACCATGCAGGCCTGAGCTTCCTGTGCTGACCTTTTTGCTGCTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | GTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACAGTTTGCTCCTTGGCATaGGGGGTGGGAAATGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: VLLSTEPSHQPSADLDDTVCSLA*GVGNGG Trigger: ACCCCCATTTCCCACCCCCAATGCCAAGGAGCAAAC...TGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | GTGAGTGTATGTGAAAGGAGCCCTGGGTTTGCTCCTTaGCATTGGGGGTGGGAAATGGGGGTCACTAACTCA | + |
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Preference number: 3 (lower is better) Translates to: VSVCERSPGFAP*HWGWEMGVTNS Trigger: TGAGTTAGTGACCCCCATTTCCCACCCCCAATGCCAAGGAGCAAACCCAGGGCTCCTTTCACATACACTCAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | GGTCTTCAAGAAGATTGGGGACAGGAGACTTCCTATCAGAGTAGCACCATTGCACTGGAGCTCACTGTGTaGACCAGGGCGGCCGTAAAC | + |
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Preference number: 3 (lower is better) Translates to: GLQEDWGQETSYQSSTIALELTV*TRAAVN Trigger: GTTTACGGCCGCCCTGGTCAACACAGTGAGCTCCAG...TGCAATGGTGCTACTCTGATAGGAAGTCTCCTGTCCCCAATCTTCTTGAAGACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | GGATTTGAACTTTGGTCCTTCGGAAGAGCAGTTGGGTaGTCTTATCCACTGAGCCATCTCACCAGCCCTCTG | + |
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Preference number: 3 (lower is better) Translates to: GFELWSFGRAVG*SYPLSHLTSPL Trigger: CAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCGAAGGACCAAAGTTCAAATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | GGTCTTCAAGAAGATTGGGGACAGGAGACTTCCTATCAGAGTAGCACCATTGCAAAAGGAGCCCTGGGTTaGCTCCTTGGCATTGGGGGT | + |
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Preference number: 3 (lower is better) Translates to: GLQEDWGQETSYQSSTIAKGALG*LLGIGG Trigger: ACCCCCAATGCCAAGGAGCAAACCCAGGGCTCCTTT...TGCAATGGTGCTACTCTGATAGGAAGTCTCCTGTCCCCAATCTTCTTGAAGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | CGGAAGAGCAGTTGGGTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCACATGTAGTACCATGCTaGGCTAAATGTCCTTTGTGT | + |
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Preference number: 3 (lower is better) Translates to: RKSSWVLLSTEPSHQPSAHVVPC*AKCPLC Trigger: ACACAAAGGACATTTAGCCAAGCATGGTACTACATG...TGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | GATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTTTGGTCCTTCGGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLITGGCEPPCG*WDLNFGPSEEQ Trigger: CTGCTCTTCCGAAGGACCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGTAATGAGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | CATTGTTGTGATTCTTGCCTTTCCCCACGTGGGTTCTaGAGATCAGATTCAGGTTCTCGGCTTCCCAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: HCCDSCLSPRGF*RSDSGSRLPSK Trigger: CTTGCTGGGAAGCCGAGAACCTGAATCTGATCTCCAGAACCCACGTGGGGAAAGGCAAGAATCACAACAATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | CTGAGCATACACTCTGAGACAGAAGCTAGTCACCTGTaGACCACTCACCTTCACCTCATAACCGATTGTCTG | + |
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Preference number: 3 (lower is better) Translates to: LSIHSETEASHL*TTHLHLITDCL Trigger: CAGACAATCGGTTATGAGGTGAAGGTGAGTGGTCCACAGGTGACTAGCTTCTGTCTCAGAGTGTATGCTCAG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | GCACACATGGAGGTCAGTAGACATTGTTGTGATTCTTaGCTTTCCCCACGTGGGTTCTGGAGATCAGATTCA | + |
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Preference number: 3 (lower is better) Translates to: AHMEVSRHCCDS*LSPRGFWRSDS Trigger: TGAATCTGATCTCCAGAACCCACGTGGGGAAAGGCAAGAATCACAACAATGTCTACTGACCTCCATGTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR-3UTR CAA 90 bp | GTTCTGGAGATCAGATTCAGGTTCTCGGCTTCCCAGCAAGCGCTTGTACCCAGCCACAGTGCTTCCATCTaGCTCCTTTTATTATACATT | + |
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Preference number: 3 (lower is better) Translates to: VLEIRFRFSASQQALVPSHSASI*LLLLYI Trigger: AATGTATAATAAAAGGAGCAAGATGGAAGCACTGTG...GCTGGGTACAAGCGCTTGCTGGGAAGCCGAGAACCTGAATCTGATCTCCAGAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | CTCAGCCTCCCTAGTGCTGTGAACACAGATGTGCACTaGCATACGTGGCTGTGGTCAGTATTTATAAAAAGA | + |
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Preference number: 3 (lower is better) Translates to: LSLPSAVNTDVH*HTWLWSVFIKR Trigger: TCTTTTTATAAATACTGACCACAGCCACGTATGGCAGTGCACATCTGTGTTCACAGCACTAGGGAGGCTGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | CACTATGTAGCCCTGACTGGCCTGGAACTTGCTATGTaGACCAAGTTGGCCTTTAACCTTGAACTCTTAAGA | + |
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Preference number: 3 (lower is better) Translates to: HYVALTGLELAM*TKLAFNLELLR Trigger: TCTTAAGAGTTCAAGGTTAAAGGCCAACTTGGTCCACATAGCAAGTTCCAGGCCAGTCAGGGCTACATAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | GCCAAACCTGGTTCGCATCAGCGTCCCACTTACTACTaGTACTTCAAAATGGTGACCAAAGTAAACTGTTCA | + |
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Preference number: 3 (lower is better) Translates to: AKPGSHQRPTYY*YFKMVTKVNCS Trigger: TGAACAGTTTACTTTGGTCACCATTTTGAAGTAGCAGTAGTAAGTGGGACGCTGATGCGAACCAGGTTTGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR CCA 72 bp | TCATGTGGAATTACAATATTTGGTCTTCAAGAAGATTaGGGACAGGAGACTTCCTATCAGAGTAGCACCATT | + |
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Preference number: 3 (lower is better) Translates to: SCGITIFGLQED*GQETSYQSSTI Trigger: AATGGTGCTACTCTGATAGGAAGTCTCCTGTCCCCAATCTTCTTGAAGACCAAATATTGTAATTCCACATGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| 3UTR GCA 72 bp | AACTCATCACATGCCTGTACAACACAGCAAATATCTTaGTTACTAGAGTGTTGGTTGCAGTCAGAACAATTT | + |
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Preference number: 3 (lower is better) Translates to: NSSHACTTQQIS*LLECWLQSEQF Trigger: AAATTGTTCTGACTGCAACCAACACTCTAGTAAGCAAGATATTTGCTGTGTTGTACAGGCATGTGATGAGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR TCA 90 bp | CGGAAGAGCAGTTGGGTGCTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCATCTTCTTCTTCCCCATaGCGCCCAGTTCTACATTCT | + |
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Preference number: 4 (lower is better) Translates to: RKSSWVLLSTEPSHQPSASSSSP*RPVLHS Trigger: AGAATGTAGAACTGGGCGTCATGGGGAAGAAGAAGA...TGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR TCA 90 bp | AAGTTCACCTTTGAGTTGAAGTCCACTGGCAGGTCTCTACAATGTTCACCCACCGCTGATGCCCAAAACTaGCGCAATCTTCTCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: KFTFELKSTGRSLQCSPTADAQN*RNLLSK Trigger: CTTGGAGAGAAGATTGCGTCAGTTTTGGGCATCAGC...GGTGGGTGAACATTGTAGAGACCTGCCAGTGGACTTCAACTCAAAGGTGAACTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS CCA 90 bp | ATCCTCTTTCATTACTTATCTGCCGTGTCGCGTCTCGGAACGCCGTaGCGGCCGCTGCCTCGGTCTCTCCCGCCGCCGCGCATCCCGACT | + |
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Preference number: 5 (lower is better) Translates to: ILFHYLSAVSRLGTP*RPLPRSLPPPRIPT Trigger: AGTCGGGATGCGCGGCGGCGGGAGAGACCGAGGCAGCGGCCGCCACGGCGTTCCGAGACGCGACACGGCAGATAAGTAATGAAAGAGGAT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR CAA 90 bp | GCAAAAAGGTCAGCACAGGAAGCTCAGGCCTGCATGGTGCCACCCTCCTGCTGTGGCCTGCAGCTTGTTTaGTTGGTATTGTCTTTCTGC | + |
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Preference number: 5 (lower is better) Translates to: AKRSAQEAQACMVPPSCCGLQLV*LVLSFC Trigger: GCAGAAAGACAATACCAACAAAACAAGCTGCAGGCC...ACAGCAGGAGGGTGGCACCATGCAGGCCTGAGCTTCCTGTGCTGACCTTTTTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR CAA 90 bp | AAGTTCACCTTTGAGTTGAAGTCCACTGGCAGGTCTCTACAATGTTCACCCACCGAGACTGGACGCTGTTaGTTTTCCTTAATTGCTTCA | + |
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Preference number: 5 (lower is better) Translates to: KFTFELKSTGRSLQCSPTETGRC*FSLIAS Trigger: TGAAGCAATTAAGGAAAACAAACAGCGTCCAGTCTC...GGTGGGTGAACATTGTAGAGACCTGCCAGTGGACTTCAACTCAAAGGTGAACTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR CAA 90 bp | TTGTTTTTGTATTTCTTGTGTGTGCACACCAGAGCACACATGGAGGTCAGTAGACGACACTGTTTCTGGTaGGTCTGTCTGTACAATGGA | + |
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Preference number: 5 (lower is better) Translates to: LFLYFLCVHTRAHMEVSRRHCFW*VCLYNG Trigger: TCCATTGTACAGACAGACCAACCAGAAACAGTGTCG...TCTACTGACCTCCATGTGTGCTCTGGTGTGCACACACAAGAAATACAAAAACAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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| CDS-3UTR CAA 90 bp | GGTCTCTACAATGTTCACCCACCCATGTTTTCATTGTATACACATTTAAGGTGGCTGCAGCTTGTTTTGTaGGTATTGTCTTTCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GLYNVHPPMFSLYTHLRWLQLVL*VLSFCF Trigger: GAAGCAGAAAGACAATACCAACAAAACAAGCTGCAG...CCACCTTAAATGTGTATACAATGAAAACATGGGTGGGTGAACATTGTAGAGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177978.3 |
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