Pregenerated sensors for FAM177A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095595Ensembl transcript IDs: ENSMUST00000177768.3
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGTGCCAAACAAGCAGCAAAAAGGTCAGCACAGGAAGCTCAGGCCTaGATGGTGCCACCCTCCTGCTGTGATCACAGGTCTGAGCATACA | + |
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Preference number: 1 (lower is better) Translates to: SAKQAAKRSAQEAQA*MVPPSCCDHRSEHT Trigger: TGTATGCTCAGACCTGTGATCACAGCAGGAGGGTGGCACCATGCAGGCCTGAGCTTCCTGTGCTGACCTTTTTGCTGCTTGTTTGGCACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR GCA 90 bp | TGGTTGCTGGGATTTGAACTTTGGTCCTTCGGAAGAGCAGTTGGGTaGTCTTATCCACTGAGCCATCTCACCAGCCCTCTGCAGATCTTG | + |
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Preference number: 1 (lower is better) Translates to: WLLGFELWSFGRAVG*SYPLSHLTSPLQIL Trigger: CAAGATCTGCAGAGGGCTGGTGAGATGGCTCAGTGGATAAGAGCACCCAACTGCTCTTCCGAAGGACCAAAGTTCAAATCCCAGCAACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR GCA 90 bp | CACACCAGAGCACACATGGAGGTCAGTAGACATTGTTGTGATTCTTaGCTTTCCCCACGTGGGTTCTGGAGATCAGATTCAGGTTCTCGG | + |
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Preference number: 1 (lower is better) Translates to: HTRAHMEVSRHCCDS*LSPRGFWRSDSGSR Trigger: CCGAGAACCTGAATCTGATCTCCAGAACCCACGTGGGGAAAGGCAAGAATCACAACAATGTCTACTGACCTCCATGTGTGCTCTGGTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR GCA 90 bp | GGAGAGATGGCCAAACCTGGTTCGCATCAGCGTCCCACTTACTACTaGTACTTCAAAATGGTGACCAAAGTAAACTGTTCAAAACTCATC | + |
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Preference number: 1 (lower is better) Translates to: GEMAKPGSHQRPTYY*YFKMVTKVNCSKLI Trigger: GATGAGTTTTGAACAGTTTACTTTGGTCACCATTTTGAAGTAGCAGTAGTAAGTGGGACGCTGATGCGAACCAGGTTTGGCCATCTCTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR GCA 90 bp | AGCCATCTCACCAGCCCTCTGCAGATCTTGATGACACATGATCTCTaGAAAATAGACTTCTTCATAAAGATGCTTGAATGCTGCATGCAA | + |
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Preference number: 1 (lower is better) Translates to: SHLTSPLQILMTHDL*KIDFFIKMLECCMQ Trigger: TTGCATGCAGCATTCAAGCATCTTTATGAAGAAGTCTATTTTGCAGAGATCATGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR TCA 72 bp | ACACCCATGAAGGTGCTGTCCGCTCCTAACCCGGGATaGCTGATGTCAGTCCAACTGAAACTTTTATTCAGT | + |
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Preference number: 3 (lower is better) Translates to: TPMKVLSAPNPG*LMSVQLKLLFS Trigger: ACTGAATAAAAGTTTCAGTTGGACTGACATCAGTCATCCCGGGTTAGGAGCGGACAGCACCTTCATGGGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR TCA 72 bp | GTAGCAACACGTGACTTCAACTACAGAGCCATTCAGTaGCTAGTGTCAGTTTGTGATCAGAGCAAGTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: VATRDFNYRAIQ*LVSVCDQSKSV Trigger: AACTGACTTGCTCTGATCACAAACTGACACTAGTCACTGAATGGCTCTGTAGTTGAAGTCACGTGTTGCTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR TCA 72 bp | CCATCTCACCAGCCCTCTGCAGATCTTGATGACACATaGTCTCTGCAAAATAGACTTCTTCATAAAGATGCT | + |
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Preference number: 3 (lower is better) Translates to: PSHQPSADLDDT*SLQNRLLHKDA Trigger: AGCATCTTTATGAAGAAGTCTATTTTGCAGAGATCATGTGTCATCAAGATCTGCAGAGGGCTGGTGAGATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR TCA 72 bp | CAACTACAGAGCCATTCAGTGACTAGTGTCAGTTTGTaGTCAGAGCAAGTCAGTTCAGTAACTACTGAAAAA | + |
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Preference number: 3 (lower is better) Translates to: QLQSHSVTSVSL*SEQVSSVTTEK Trigger: TTTTTCAGTAGTTACTGAACTGACTTGCTCTGATCACAAACTGACACTAGTCACTGAATGGCTCTGTAGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR TCA 72 bp | CCAACTGAAACTTTTATTCAGTTAAAAGTTCACCTTTaGGTTGAAGTCCACTGGCAGGTCTCTACAATGTTC | + |
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Preference number: 3 (lower is better) Translates to: PTETFIQLKVHL*VEVHWQVSTMF Trigger: GAACATTGTAGAGACCTGCCAGTGGACTTCAACTCAAAGGTGAACTTTTAACTGAATAAAAGTTTCAGTTGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR CAA 72 bp | CAGGTGTCACCATGTGCTAGGCTGGAGCTCACTGTGTaGACCAGGGCGGCCGTAAACTCACCTGGTGCAAAG | + |
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Preference number: 4 (lower is better) Translates to: QVSPCARLELTV*TRAAVNSPGAK Trigger: CTTTGCACCAGGTGAGTTTACGGCCGCCCTGGTCAACACAGTGAGCTCCAGCCTAGCACATGGTGACACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR CAA 72 bp | ACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTTTGGTCCTTCGGAAGAGCAGTTGGGTGCT | + |
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Preference number: 4 (lower is better) Translates to: TGGCEPPCGCWD*NFGPSEEQLGA Trigger: AGCACCCAACTGCTCTTCCGAAGGACCAAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCACCCGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR CAA 72 bp | GCAGGTCTCTACAATGTTCACCCACCCATGTTTTCATaGTATACACATTTAAGGTGGAAAGGTAATGGTACT | + |
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Preference number: 4 (lower is better) Translates to: AGLYNVHPPMFS*YTHLRWKGNGT Trigger: AGTACCATTACCTTTCCACCTTAAATGTGTATACAATGAAAACATGGGTGGGTGAACATTGTAGAGACCTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| 3UTR CAA 72 bp | AAACTCATCACATGCCTGTACAACACAGCAAATATCTaGCTTACTAGAGTGTTGGTTGCAGTCAGAACAATT | + |
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Preference number: 4 (lower is better) Translates to: KLITCLYNTANI*LTRVLVAVRTI Trigger: AATTGTTCTGACTGCAACCAACACTCTAGTAAGCAAGATATTTGCTGTGTTGTACAGGCATGTGATGAGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| CDS CCA 72 bp | CATTACTTATCTGCCGTGTCGCGTCTCGGAACGCCGTaGCGGCCGCTGCCTCGGTCTCTCCCGCCGCCGCGC | + |
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Preference number: 6 (lower is better) Translates to: HYLSAVSRLGTP*RPLPRSLPPPR Trigger: GCGCGGCGGCGGGAGAGACCGAGGCAGCGGCCGCCACGGCGTTCCGAGACGCGACACGGCAGATAAGTAATG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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| CDS CCA 72 bp | TCTCTCCAAGAAAGTCACACACTGAGAGGGTTGATGTaGCGGCCCGCAGCATGTAAAACCATAGGTAGGGGC | + |
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Preference number: 6 (lower is better) Translates to: SLQESHTLRGLM*RPAACKTIGRG Trigger: GCCCCTACCTATGGTTTTACATGCTGCGGGCCGCCACATCAACCCTCTCAGTGTGTGACTTTCTTGGAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000177768.3 |
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