Pregenerated sensors for FAM174B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078670Ensembl transcript IDs: ENSMUST00000107456.4, ENSMUST00000205946.2
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGTGGCCAGCTTCCTAGAGTCACCACTGTGCTTCAGTCCATGGTaGGAGGACAGTCACCGGCTCCAGTTCACAACCCGCCCCTCTGGC | + |
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Preference number: 1 (lower is better) Translates to: EVASFLESPLCFSPW*EDSHRLQFTTRPSG Trigger: GCCAGAGGGGCGGGTTGTGAACTGGAGCCGGTGACTGTCCTCTCACCATGGACTGAAGCACAGTGGTGACTCTAGGAAGCTGGCCACCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 90 bp | TGGTTCAGCTGCAGTTCTGGGACCCTCGAGTCCCGGCTCCAAGGCTaGGAGGATGTACAGCTTCGAGGTGGCCAGCTTCCTAGAGTCACC | + |
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Preference number: 1 (lower is better) Translates to: WFSCSSGTLESRLQG*EDVQLRGGQLPRVT Trigger: GGTGACTCTAGGAAGCTGGCCACCTCGAAGCTGTACATCCTCTCAGCCTTGGAGCCGGGACTCGAGGGTCCCAGAACTGCAGCTGAACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 90 bp | CTACAGCAATATGGGAGAAGGCCAAGTGGGAGGCCTCCATTAACCTaGGCAGTTAGTCCAGAGCCTGTTTCCTCAGGGCTCCCCTGGGTA | + |
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Preference number: 1 (lower is better) Translates to: LQQYGRRPSGRPPLT*AVSPEPVSSGLPWV Trigger: TACCCAGGGGAGCCCTGAGGAAACAGGCTCTGGACTAACTGCTCAGGTTAATGGAGGCCTCCCACTTGGCCTTCTCCCATATTGCTGTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 90 bp | ATGCCTCTGGAGCCAACCCACTTTTCTGTGACCAGGTGTCTTCATTaGAACCCGCTCATTAGGCTAGGCTGGCTGGACAGTCAACCCCAA | + |
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Preference number: 1 (lower is better) Translates to: MPLEPTHFSVTRCLH*NPLIRLGWLDSQPQ Trigger: TTGGGGTTGACTGTCCAGCCAGCCTAGCCTAATGAGCGGGTTCCAATGAAGACACCTGGTCACAGAAAAGTGGGTTGGCTCCAGAGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 90 bp | GACAGTGGTGGAGCTGGCCAAGGTACGAGTTTTCATCCAAAGCAATaGAGCAGGGCATTAGACAGGCAAATACACAAACAAACCCTAGGA | + |
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Preference number: 1 (lower is better) Translates to: DSGGAGQGTSFHPKQ*SRALDRQIHKQTLG Trigger: TCCTAGGGTTTGTTTGTGTATTTGCCTGTCTAATGCCCTGCTCCATTGCTTTGGATGAAAACTCGTACCTTGGCCAGCTCCACCACTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 90 bp | GATCTTTATTTAAGTGCCTACGGTGTTGAAGTTCCATCAAGGATTTaGAAGGTCACTGTCCCACCACTCCTGCCAGTCAGTGATGAGTGG | + |
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Preference number: 1 (lower is better) Translates to: DLYLSAYGVEVPSRI*KVTVPPLLPVSDEW Trigger: CCACTCATCACTGACTGGCAGGAGTGGTGGGACAGTGACCTTCCAAATCCTTGATGGAACTTCAACACCGTAGGCACTTAAATAAAGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 90 bp | GCACTAAGGCAGGACAAATGTTTTTACAGCACACAAGAAAGTCTCTaGGAGCCACCTGGCACTTTCCCTTCCCAAGAGAAGAGAAATTAT | + |
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Preference number: 1 (lower is better) Translates to: ALRQDKCFYSTQESL*EPPGTFPSQEKRNY Trigger: ATAATTTCTCTTCTCTTGGGAAGGGAAAGTGCCAGGTGGCTCTCAGAGACTTTCTTGTGTGCTGTAAAAACATTTGTCCTGCCTTAGTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 90 bp | AGGGCATTAGACAGGCAAATACACAAACAAACCCTAGGACAAAGATaGAAAGGAACTGAGATAACAAGGGTCACCTTCCCAGACGTGATG | + |
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Preference number: 1 (lower is better) Translates to: RALDRQIHKQTLGQR*KGTEITRVTFPDVM Trigger: CATCACGTCTGGGAAGGTGACCCTTGTTATCTCAGTTCCTTTTCATCTTTGTCCTAGGGTTTGTTTGTGTATTTGCCTGTCTAATGCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 90 bp | GGACAAATGTTTTTACAGCACACAAGAAAGTCTCTGAGAGCCACCTaGCACTTTCCCTTCCCAAGAGAAGAGAAATTATCTGATAGGTGT | + |
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Preference number: 1 (lower is better) Translates to: GQMFLQHTRKSLRAT*HFPFPREEKLSDRC Trigger: ACACCTATCAGATAATTTCTCTTCTCTTGGGAAGGGAAAGTGCCAGGTGGCTCTCAGAGACTTTCTTGTGTGCTGTAAAAACATTTGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CCA 90 bp | CAGGGCTCCCCTGGGTACCCAGCTCCCAGGGTAGGTGCCCACCTGAACTCCTCAGGCAGACGCTGGACATaGAGGGTGAAGCCAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: QGSPGYPAPRVGAHLNSSGRRWT*RVKPEF Trigger: GAACTCTGGCTTCACCCTCCATGTCCAGCGTCTGCC...TGAGGAGTTCAGGTGGGCACCTACCCTGGGAGCTGGGTACCCAGGGGAGCCCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR TCA 90 bp | TTTCTGGCAGCTGAGAACGAGCGTGACAGTGACATTCCAGGCAGACGCTGGACAAGCCCAGGCTGCAGCTaGCCAGCTTCCCCACAGGAC | + |
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Preference number: 2 (lower is better) Translates to: FLAAENERDSDIPGRRWTSPGCS*PASPQD Trigger: GTCCTGTGGGGAAGCTGGTCAGCTGCAGCCTGGGCT...TGTCCAGCGTCTGCCTGGAATGTCACTGTCACGCTCGTTCTCAGCTGCCAGAAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107456.4 ENSMUST00000205946.2 |
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| 3UTR-3UTR TCA 90 bp | GACAGTGGTGGAGCTGGCCAAGGTACGAGTTTTCATCCAAAGCAATGGAGCAGGAGCCCAGGCTGCAGCTaGCCAGCTTCCCCACAGGAC | + |
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Preference number: 2 (lower is better) Translates to: DSGGAGQGTSFHPKQWSRSPGCS*PASPQD Trigger: GTCCTGTGGGGAAGCTGGTCAGCTGCAGCCTGGGCT...CCTGCTCCATTGCTTTGGATGAAAACTCGTACCTTGGCCAGCTCCACCACTGTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CCA 90 bp | TCAGTCCATGGTGAGAGGACAGTCACCGGCTCCAGTTCACAACCCGCCCCTCTGCCTGCTACAGCAATATaGGAGAAGGCCAAGTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: SVHGERTVTGSSSQPAPLPATAI*EKAKWE Trigger: CTCCCACTTGGCCTTCTCCCATATTGCTGTAGCAGG...CAGAGGGGCGGGTTGTGAACTGGAGCCGGTGACTGTCCTCTCACCATGGACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CCA 90 bp | TCAGTCCATGGTGAGAGGACAGTCACCGGCTCCAGTTCACAACCCGCCCCTCTGGCACACCTCAGATGCTaGCTTAGGGCTGAAAGAACC | + |
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Preference number: 2 (lower is better) Translates to: SVHGERTVTGSSSQPAPLAHLRC*LRAERT Trigger: GGTTCTTTCAGCCCTAAGCCAGCATCTGAGGTGTGC...CAGAGGGGCGGGTTGTGAACTGGAGCCGGTGACTGTCCTCTCACCATGGACTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CCA 90 bp | TCAAGACAAGGGTGGAAAGAGAATTTCAAAGGGTCATCCGAGGGCCGGCTAAGGGGCAGACGCTGGACATaGAGGGTGAAGCCAGAGTTC | + |
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Preference number: 2 (lower is better) Translates to: SRQGWKENFKGSSEGRLRGRRWT*RVKPEF Trigger: GAACTCTGGCTTCACCCTCCATGTCCAGCGTCTGCC...CCTTAGCCGGCCCTCGGATGACCCTTTGAAATTCTCTTTCCACCCTTGTCTTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000107456.4 ENSMUST00000205946.2 |
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| 3UTR-3UTR TCA 90 bp | GACAGTGGTGGAGCTGGCCAAGGTACGAGTTTTCATCCAAAGCAATGGAGCAGGGCTGGACATGGAGGGTaGAGCCAGAGTTCCATAAAT | + |
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Preference number: 2 (lower is better) Translates to: DSGGAGQGTSFHPKQWSRAGHGG*SQSSIN Trigger: ATTTATGGAACTCTGGCTTCACCCTCCATGTCCAGC...CCTGCTCCATTGCTTTGGATGAAAACTCGTACCTTGGCCAGCTCCACCACTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR TCA 90 bp | CAAGTCAGGCTCCTGAGCCAGGGTGGATCTTCCCACCTACCGCCATCACCACAAAAGATGAAAAGGAACTaGGATAACAAGGGTCACCTT | + |
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Preference number: 2 (lower is better) Translates to: QVRLLSQGGSSHLPPSPQKMKRN*DNKGHL Trigger: AAGGTGACCCTTGTTATCTCAGTTCCTTTTCATCTT...TTGTGGTGATGGCGGTAGGTGGGAAGATCCACCCTGGCTCAGGAGCCTGACTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGGCACTGCTATTAGATTTGCACAGAAGCATTCCTGCTACAGCAATATGGAGGCCTCCATTAACCTaGGCAGTTAGTCCAGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: PKALLLDLHRSIPATAIWRPPLT*AVSPEP Trigger: AGGCTCTGGACTAACTGCTCAGGTTAATGGAGGCCT...CCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGCCTTTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR TCA 90 bp | AAGGCACTGCTATTAGATTTGCACAGAAGCATTCCTGCTACAGCAATATGGGAGCAACCCACTTTTCTGTaGCCAGGTGTCTTCATTGGA | + |
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Preference number: 2 (lower is better) Translates to: KALLLDLHRSIPATAIWEQPTFL*PGVFIG Trigger: TCCAATGAAGACACCTGGTCACAGAAAAGTGGGTTG...CTCCCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGCCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CCA 90 bp | CCAAAGGCACTGCTATTAGATTTGCACAGAAGCATTCCTGCTACAGCAATATGGGGCAGAAATGAAGCTTaGCTATTATGCCTCTGGAGC | + |
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Preference number: 2 (lower is better) Translates to: PKALLLDLHRSIPATAIWGRNEA*LLCLWS Trigger: GCTCCAGAGGCATAATAGCCAAGCTTCATTTCTGCC...CCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGCCTTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR TCA 90 bp | CCAAAGGCACTGCTATTAGATTTGCACAGAAGCATTCCTGCTACAGCAATATGGCTGAAGAAGCTGAAATaGTTTGGGAGAACAAAAATG | + |
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Preference number: 2 (lower is better) Translates to: PKALLLDLHRSIPATAIWLKKLK*FGRTKM Trigger: CATTTTTGTTCTCCCAAATCATTTCAGCTTCTTCAG...CCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGCCTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR GCA 72 bp | TCAGGGCTCCCCTGGGTACCCAGCTCCCAGGGTAGGTaGCCACCTGAACTCCTCATAAACAGCGGTGGGCCC | + |
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Preference number: 3 (lower is better) Translates to: SGLPWVPSSQGR*PPELLINSGGP Trigger: GGGCCCACCGCTGTTTATGAGGAGTTCAGGTGGGCACCTACCCTGGGAGCTGGGTACCCAGGGGAGCCCTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | GCAGTTAGTCCAGAGCCTGTTTCCTCAGGGCTCCCCTaGGTACCCAGCTCCCAGGGTAGGTGCCCACCTGAA | + |
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Preference number: 3 (lower is better) Translates to: AVSPEPVSSGLP*VPSSQGRCPPE Trigger: TTCAGGTGGGCACCTACCCTGGGAGCTGGGTACCCAGGGGAGCCCTGAGGAAACAGGCTCTGGACTAACTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR GCA 72 bp | CATCAAGGATTTGGAAGGTCACTGTCCCACCACTCCTaGCAGTCAGTGATGAGTGGCTGGCAGCCGGATCCG | + |
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Preference number: 3 (lower is better) Translates to: HQGFGRSLSHHS*QSVMSGWQPDP Trigger: CGGATCCGGCTGCCAGCCACTCATCACTGACTGGCAGGAGTGGTGGGACAGTGACCTTCCAAATCCTTGATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | CTTAGGGCTGAAAGAACCAGTGTCAAGTCAGGCTCCTaGGCCAGGGTGGATCTTCCCACCTACCGCCATCAC | + |
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Preference number: 3 (lower is better) Translates to: LRAERTSVKSGS*ARVDLPTYRHH Trigger: GTGATGGCGGTAGGTGGGAAGATCCACCCTGGCTCAGGAGCCTGACTTGACACTGGTTCTTTCAGCCCTAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | AGCTTCCTAGAGTCACCACTGTGCTTCAGTCCATGGTaGGAGGACAGTCACCGGCTCCAGTTCACAACCCGC | + |
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Preference number: 3 (lower is better) Translates to: SFLESPLCFSPW*EDSHRLQFTTR Trigger: GCGGGTTGTGAACTGGAGCCGGTGACTGTCCTCTCACCATGGACTGAAGCACAGTGGTGACTCTAGGAAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | AAAGAACCAGTGTCAAGTCAGGCTCCTGAGCCAGGGTaGATCTTCCCACCTACCGCCATCACCACAACCCCA | + |
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Preference number: 3 (lower is better) Translates to: KEPVSSQAPEPG*IFPPTAITTTP Trigger: TGGGGTTGTGGTGATGGCGGTAGGTGGGAAGATCCACCCTGGCTCAGGAGCCTGACTTGACACTGGTTCTTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | AGAATCCAGCTTTTCCAGATGGTTCAGCTGCAGTTCTaGGACCCTCGAGTCCCGGCTCCAAGGCTGAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: RIQLFQMVQLQF*DPRVPAPRLRG Trigger: TCCTCTCAGCCTTGGAGCCGGGACTCGAGGGTCCCAGAACTGCAGCTGAACCATCTGGAAAAGCTGGATTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | GTCACTGTCCCACCACTCCTGCCAGTCAGTGATGAGTaGCTGGCAGCCGGATCCGTGGTGTTCATACATAAG | + |
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Preference number: 3 (lower is better) Translates to: VTVPPLLPVSDE*LAAGSVVFIHK Trigger: CTTATGTATGAACACCACGGATCCGGCTGCCAGCCACTCATCACTGACTGGCAGGAGTGGTGGGACAGTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | TATGGGAGAAGGCCAAGTGGGAGGCCTCCATTAACCTaGGCAGTTAGTCCAGAGCCTGTTTCCTCAGGGCTC | + |
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Preference number: 3 (lower is better) Translates to: YGRRPSGRPPLT*AVSPEPVSSGL Trigger: GAGCCCTGAGGAAACAGGCTCTGGACTAACTGCTCAGGTTAATGGAGGCCTCCCACTTGGCCTTCTCCCATA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | CGCCATCACCACAACCCCAGTCAGAACTGGAGAACCTaGCAGTGGTGGAGCTGGCCAAGGTACGAGTTTTCA | + |
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Preference number: 3 (lower is better) Translates to: RHHHNPSQNWRT*QWWSWPRYEFS Trigger: TGAAAACTCGTACCTTGGCCAGCTCCACCACTGTCAGGTTCTCCAGTTCTGACTGGGGTTGTGGTGATGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | GAGCCAACCCACTTTTCTGTGACCAGGTGTCTTCATTaGAACCCGCTCATTAGGCTAGGCTGGCTGGACAGT | + |
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Preference number: 3 (lower is better) Translates to: EPTHFSVTRCLH*NPLIRLGWLDS Trigger: ACTGTCCAGCCAGCCTAGCCTAATGAGCGGGTTCCAATGAAGACACCTGGTCACAGAAAAGTGGGTTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | TTAATGGATCCCAGGAGCACAGCACACCTCAGATGCTaGCTTAGGGCTGAAAGAACCAGTGTCAAGTCAGGC | + |
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Preference number: 3 (lower is better) Translates to: LMDPRSTAHLRC*LRAERTSVKSG Trigger: GCCTGACTTGACACTGGTTCTTTCAGCCCTAAGCCAGCATCTGAGGTGTGCTGTGCTCCTGGGATCCATTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | TTAAGTGCCTACGGTGTTGAAGTTCCATCAAGGATTTaGAAGGTCACTGTCCCACCACTCCTGCCAGTCAGT | + |
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Preference number: 3 (lower is better) Translates to: LSAYGVEVPSRI*KVTVPPLLPVS Trigger: ACTGACTGGCAGGAGTGGTGGGACAGTGACCTTCCAAATCCTTGATGGAACTTCAACACCGTAGGCACTTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | TTAGATTTGCACAGAAGCATTCCTGCTACAGCAATATaGGAGAAGGCCAAGTGGGAGGCCTCCATTAACCTG | + |
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Preference number: 3 (lower is better) Translates to: LDLHRSIPATAI*EKAKWEASINL Trigger: CAGGTTAATGGAGGCCTCCCACTTGGCCTTCTCCCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR-3UTR CAA 90 bp | GAGAACCTGACAGTGGTGGAGCTGGCCAAGGTACGAGTTTTCATCCAAAGCAATGCACTGCTATTAGATTaGCACAGAAGCATTCCTGCT | + |
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Preference number: 3 (lower is better) Translates to: ENLTVVELAKVRVFIQSNALLLD*HRSIPA Trigger: AGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGC...ATTGCTTTGGATGAAAACTCGTACCTTGGCCAGCTCCACCACTGTCAGGTTCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | CAGGACAAATGTTTTTACAGCACACAAGAAAGTCTCTaGGAGCCACCTGGCACTTTCCCTTCCCAAGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: QDKCFYSTQESL*EPPGTFPSQEK Trigger: CTTCTCTTGGGAAGGGAAAGTGCCAGGTGGCTCTCAGAGACTTTCTTGTGTGCTGTAAAAACATTTGTCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | GGAGCTGGCCAAGGTACGAGTTTTCATCCAAAGCAATaGAGCAGGGCATTAGACAGGCAAATACACAAACAA | + |
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Preference number: 3 (lower is better) Translates to: GAGQGTSFHPKQ*SRALDRQIHKQ Trigger: TTGTTTGTGTATTTGCCTGTCTAATGCCCTGCTCCATTGCTTTGGATGAAAACTCGTACCTTGGCCAGCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | ACACAAACAAACCCTAGGACAAAGATGAAAAGGAACTaGGATAACAAGGGTCACCTTCCCAGACGTGATGCA | + |
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Preference number: 3 (lower is better) Translates to: TQTNPRTKMKRN*DNKGHLPRRDA Trigger: TGCATCACGTCTGGGAAGGTGACCCTTGTTATCTCAGTTCCTTTTCATCTTTGTCCTAGGGTTTGTTTGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR TCA 72 bp | GACAGGCAAATACACAAACAAACCCTAGGACAAAGATaGAAAGGAACTGAGATAACAAGGGTCACCTTCCCA | + |
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Preference number: 3 (lower is better) Translates to: DRQIHKQTLGQR*KGTEITRVTFP Trigger: TGGGAAGGTGACCCTTGTTATCTCAGTTCCTTTTCATCTTTGTCCTAGGGTTTGTTTGTGTATTTGCCTGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CCA 72 bp | TTTTTACAGCACACAAGAAAGTCTCTGAGAGCCACCTaGCACTTTCCCTTCCCAAGAGAAGAGAAATTATCT | + |
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Preference number: 3 (lower is better) Translates to: FLQHTRKSLRAT*HFPFPREEKLS Trigger: AGATAATTTCTCTTCTCTTGGGAAGGGAAAGTGCCAGGTGGCTCTCAGAGACTTTCTTGTGTGCTGTAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| CDS-3UTR TCA 90 bp | TGGCAGCTGAGAACGAGCGTGACAGTGACATTCCAGGCAGACGCTGGACATGGAAACCTTTTTCCCAACTaGTGGGAGACCCAGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: WQLRTSVTVTFQADAGHGNLFPN*WETQRP Trigger: TGGCCTCTGGGTCTCCCATCAGTTGGGAAAAAGGTT...TCCATGTCCAGCGTCTGCCTGGAATGTCACTGTCACGCTCGTTCTCAGCTGCCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205946.2 |
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| CDS-3UTR GCA 90 bp | CACAGCACTAAGGCAGGACAAATGTTTTTACAGCACACAAGAAAGTCTCTGAGAGAAGCAGACTGGAGATaGGGGTCACCACCGCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: HSTKAGQMFLQHTRKSLREADWR*GSPPRR Trigger: TCGACGCGGTGGTGACCCGCATCTCCAGTCTGCTTC...TCTCAGAGACTTTCTTGTGTGCTGTAAAAACATTTGTCCTGCCTTAGTGCTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| 3UTR CAA 72 bp | TGCACTCCCAGGGTCCCAAAGGCACTGCTATTAGATTaGCACAGAAGCATTCCTGCTACAGCAATATGGGAG | + |
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Preference number: 4 (lower is better) Translates to: CTPRVPKALLLD*HRSIPATAIWE Trigger: CTCCCATATTGCTGTAGCAGGAATGCTTCTGTGCAAATCTAATAGCAGTGCCTTTGGGACCCTGGGAGTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| CDS CCA 90 bp | GTAGCATTCCCGGGACCGGGCGGAGGCTGGTGTTCTGCTTCGGGCTaGGAGGCCGAAGCGGACTCGGCTCTGCGAGCGAGGGCGGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: VAFPGPGGGWCSASG*EAEADSALRARAAG Trigger: GCCCGCCGCCCTCGCTCGCAGAGCCGAGTCCGCTTCGGCCTCCCAGCCCGAAGCAGAACACCAGCCTCCGCCCGGTCCCGGGAATGCTAC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| CDS GCA 90 bp | GACGCGCAGCAGCAGACAGGCGATGAGCAGCGCGCTGAAGGCACATaGCACGATCACCGTCGCCTTCAGGGTAGGCAGGTCACGAAGCAG | + |
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Preference number: 5 (lower is better) Translates to: DAQQQTGDEQRAEGT*HDHRRLQGRQVTKQ Trigger: CTGCTTCGTGACCTGCCTACCCTGAAGGCGACGGTGATCGTGGCATGTGCCTTCAGCGCGCTGCTCATCGCCTGTCTGCTGCTGCGCGTC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| CDS GCA 72 bp | CTGCTTCGGGCTGGGAGGCCGAAGCGGACTCGGCTCTaGGAGCGAGGGCGGCGGGCGCGGCCAGGAGCGCGA | + |
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Preference number: 6 (lower is better) Translates to: LLRAGRPKRTRL*ERGRRARPGAR Trigger: TCGCGCTCCTGGCCGCGCCCGCCGCCCTCGCTCGCAGAGCCGAGTCCGCTTCGGCCTCCCAGCCCGAAGCAG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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| CDS CAA 72 bp | TCCACACGTTCCGCAGGGGTGGTGATGATGTCATACTaGCGAGTCTTCTTCAACCTTTTTCCCAACCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: STRSAGVVMMSY*RVFFNLFPNLK Trigger: CTTCAGGTTGGGAAAAAGGTTGAAGAAGACTCGCAAGTATGACATCATCACCACCCCTGCGGAACGTGTGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000107456.4 |
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