Pregenerated sensors for FAM166C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029182Ensembl transcript IDs: ENSMUST00000031078.10, ENSMUST00000114743.2, ENSMUST00000127815.2, ENSMUST00000199129.5
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACAGAGCTGTAGAAAACCCTGGATTGCCTCTGCCCCTGGAACTCTaGAAAGGCAACCCTGTCTCCGGCCACATAGGCCTTCCCAGGCTG | + |
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Preference number: 1 (lower is better) Translates to: DRAVENPGLPLPLEL*KGNPVSGHIGLPRL Trigger: CAGCCTGGGAAGGCCTATGTGGCCGGAGACAGGGTTGCCTTTTCAGAGTTCCAGGGGCAGAGGCAATCCAGGGTTTTCTACAGCTCTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| 3UTR CCA 90 bp | TTAGTAGGTTCCACTTACTCTTCTCACTCAGAGGAGGCAGGTCGGTaGGTAGGGGGTACCGGTCCGGCTCCTTCACAGGAAGTACAAAGT | + |
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Preference number: 1 (lower is better) Translates to: LVGSTYSSHSEEAGR*VGGTGPAPSQEVQS Trigger: ACTTTGTACTTCCTGTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTCCTCTGAGTGAGAAGAGTAAGTGGAACCTACTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| 3UTR-3UTR CCA 90 bp | ACTCTACCACAAAGCTATAGAGTCACAAAGACTTCAGGAAGCAGAAGGAAGGGGAGCTGTAGAAAACCCTaGATTGCCTCTGCCCCTGGA | + |
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Preference number: 2 (lower is better) Translates to: TLPQSYRVTKTSGSRRKGSCRKP*IASAPG Trigger: TCCAGGGGCAGAGGCAATCCAGGGTTTTCTACAGCT...CCCCTTCCTTCTGCTTCCTGAAGTCTTTGTGACTCTATAGCTTTGTGGTAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| 3UTR-3UTR CCA 90 bp | ATACTTGAAGACTCCCCAGTTACATTGGATGTGAATGAGCGAGACAGAGCTGTAGATTGCCTCTGCCCCTaGAACTCTGAAAAGGCAACC | + |
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Preference number: 2 (lower is better) Translates to: ILEDSPVTLDVNERDRAVDCLCP*NSEKAT Trigger: GGTTGCCTTTTCAGAGTTCCAGGGGCAGAGGCAATC...TACAGCTCTGTCTCGCTCATTCACATCCAATGTAACTGGGGAGTCTTCAAGTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| 3UTR-3UTR GCA 90 bp | TCTGGTAGGTCCTCTTGTAGTCAGGGGATAATCTTAGTAGGTTCCACTTACTCTGAACACGGGACAGAATaGCAGTCTTGTCTTGGTAAT | + |
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Preference number: 2 (lower is better) Translates to: SGRSSCSQGIILVGSTYSEHGTE*QSCLGN Trigger: ATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTC...AGAGTAAGTGGAACCTACTAAGATTATCCCCTGACTACAAGAGGACCTACCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| 3UTR CCA 72 bp | TCCACTTACTCTTCTCACTCAGAGGAGGCAGGTCGGTaGGTAGGGGGTACCGGTCCGGCTCCTTCACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: STYSSHSEEAGR*VGGTGPAPSQE Trigger: TTCCTGTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTCCTCTGAGTGAGAAGAGTAAGTGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| 3UTR TCA 72 bp | CCGCCTTTGGCGCTCTTGAGAGGAAACTCTCTTCCCTaGTGGGAAGGTCTGGTAGGTCCTCTTGTAGTCAGG | + |
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Preference number: 3 (lower is better) Translates to: PPLALLRGNSLP*WEGLVGPLVVR Trigger: CCTGACTACAAGAGGACCTACCAGACCTTCCCATCAGGGAAGAGAGTTTCCTCTCAAGAGCGCCAAAGGCGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| 3UTR CCA 72 bp | GTTGTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTaGTCAGGCCAAGGTTCCCTGGGGTCAACCACCTGG | + |
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Preference number: 3 (lower is better) Translates to: VVAEDFITSKPA*SGQGSLGSTTW Trigger: CCAGGTGGTTGACCCCAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCACAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| 3UTR GCA 72 bp | TCACAGGAAGTACAAAGTAAGGAACACGGGACAGAATaGCAGTCTTGTCTTGGTAATACTTCCGCTGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: SQEVQSKEHGTE*QSCLGNTSAAA Trigger: AGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTGTACTTCCTGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| 3UTR-3UTR CAA 90 bp | AGAGAAGTAAAAACTCTACCACAAAGCTATAGAGTCACAAAGACTTCAGGAAGCGTAGAAAACCCTGGATaGCCTCTGCCCCTGGAACTC | + |
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Preference number: 3 (lower is better) Translates to: REVKTLPQSYRVTKTSGSVENPG*PLPLEL Trigger: GAGTTCCAGGGGCAGAGGCAATCCAGGGTTTTCTAC...GCTTCCTGAAGTCTTTGTGACTCTATAGCTTTGTGGTAGAGTTTTTACTTCTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS-3UTR CCA 90 bp | GAGGCAGGTCGGTGGGTAGGGGGTACCGGTCCGGCTCCTTCACAGGAAGTACAACCCGGGCATGAGAGCTaGGGGCACGAAGGCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: EAGRWVGGTGPAPSQEVQPGHES*GHEGGI Trigger: AATGCCGCCTTCGTGCCCCCAGCTCTCATGCCCGGG...TTGTACTTCCTGTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| CDS-3UTR TCA 90 bp | GCAGGTCGGTGGGTAGGGGGTACCGGTCCGGCTCCTTCACAGGAAGTACAAAGTCTTTGTACCCGGGCATaGGAGCTGGGGGCACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: AGRWVGGTGPAPSQEVQSLCTRA*ELGARR Trigger: CCTTCGTGCCCCCAGCTCTCATGCCCGGGTACAAAG...ACTTTGTACTTCCTGTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| CDS-3UTR CCA 90 bp | TTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGGGGTCAACCACCTCCCGGGCATGAGAGCTaGGGGCACGAAGGCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: LLQASQPGQAKVPWGQPPPGHES*GHEGGI Trigger: AATGCCGCCTTCGTGCCCCCAGCTCTCATGCCCGGG...AGGTGGTTGACCCCAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | GTGAATGAGCGAGACAGAGCTGTAGAAAACCCTGGATTGCCTCTGCCCCTGGAACTTTGTACCCGGGCATaGGAGCTGGGGGCACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: VNERDRAVENPGLPLPLELCTRA*ELGARR Trigger: CCTTCGTGCCCCCAGCTCTCATGCCCGGGTACAAAG...TTCCAGGGGCAGAGGCAATCCAGGGTTTTCTACAGCTCTGTCTCGCTCATTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS-3UTR CCA 90 bp | TTGTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCGAGGAGGCAGGTCGGTaGGTAGGGGGTACCGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: LWLKILLQASQPGQAKVPEEAGR*VGGTGP Trigger: CGGACCGGTACCCCCTACCCACCGACCTGCCTCCTC...GGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCACAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | GTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGCTTTGTACCCGGGCATaGGAGCTGGGGGCACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: VAEDFITSKPAWSGQGSLLCTRA*ELGARR Trigger: CCTTCGTGCCCCCAGCTCTCATGCCCGGGTACAAAG...CAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | CTGATGGGAAGGTCTGGTAGGTCCTCTTGTAGTCAGGGGATAATCTTAGTAGGTCTTTGTACCCGGGCATaGGAGCTGGGGGCACGAAGG | + |
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Preference number: 4 (lower is better) Translates to: LMGRSGRSSCSQGIILVGLCTRA*ELGARR Trigger: CCTTCGTGCCCCCAGCTCTCATGCCCGGGTACAAAG...ACCTACTAAGATTATCCCCTGACTACAAGAGGACCTACCAGACCTTCCCATCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| CDS-3UTR GCA 90 bp | CGAAGTAAAGGTCCCGCCTTTGGCGCTCTTGAGAGGAAACTCTCTTCCCTGATGTCTCCAAGCCTGTGTTaGGGAGGTCCTGGAAGTACT | + |
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Preference number: 4 (lower is better) Translates to: RSKGPAFGALERKLSSLMSPSLC*GGPGST Trigger: AGTACTTCCAGGACCTCCGCAACACAGGCTTGGAGA...CATCAGGGAAGAGAGTTTCCTCTCAAGAGCGCCAAAGGCGGGACCTTTACTTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| CDS-3UTR CCA 90 bp | TCTGGTAGGTCCTCTTGTAGTCAGGGGATAATCTTAGTAGGTTCCACTTACTCTCCCGGGCATGAGAGCTaGGGGCACGAAGGCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: SGRSSCSQGIILVGSTYSPGHES*GHEGGI Trigger: AATGCCGCCTTCGTGCCCCCAGCTCTCATGCCCGGG...AGAGTAAGTGGAACCTACTAAGATTATCCCCTGACTACAAGAGGACCTACCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| CDS-3UTR CCA 90 bp | ATACTTGAAGACTCCCCAGTTACATTGGATGTGAATGAGCGAGACAGAGCTGTACCCGGGCATGAGAGCTaGGGGCACGAAGGCGGCATT | + |
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Preference number: 4 (lower is better) Translates to: ILEDSPVTLDVNERDRAVPGHES*GHEGGI Trigger: AATGCCGCCTTCGTGCCCCCAGCTCTCATGCCCGGG...TACAGCTCTGTCTCGCTCATTCACATCCAATGTAACTGGGGAGTCTTCAAGTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS-3UTR TCA 90 bp | TGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGGGGTCCTGGAAGTACTTaGAGGTGGTGTTGCCATAAG | + |
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Preference number: 4 (lower is better) Translates to: WLKILLQASQPGQAKVPWGPGST*RWCCHK Trigger: CTTATGGCAACACCACCTTCAAGTACTTCCAGGACC...CCAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | AGTAAAGGTCCCGCCTTTGGCGCTCTTGAGAGGAAACTCTCTTCCCTGATGGGATCGATCCCAGTTCTGTaGGTTATCAGTCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: SKGPAFGALERKLSSLMGSIPVL*VISQNQ Trigger: CTGGTTCTGACTGATAACTCACAGAACTGGGATCGA...TCCCATCAGGGAAGAGAGTTTCCTCTCAAGAGCGCCAAAGGCGGGACCTTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| CDS-3UTR TCA 90 bp | TTGTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCGGAAACTCTCTTCCCTaGTGGGAAGGTCTGGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: LWLKILLQASQPGQAKVPGNSLP*WEGLVG Trigger: ACCTACCAGACCTTCCCATCAGGGAAGAGAGTTTCC...GGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR GCA 90 bp | GTTGTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCTCTCCAAGCCTGTGTTaGGGAGGTCCTGGAAGTACT | + |
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Preference number: 4 (lower is better) Translates to: VVAEDFITSKPAWSGQGSSPSLC*GGPGST Trigger: AGTACTTCCAGGACCTCCGCAACACAGGCTTGGAGA...GGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCACAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR CCA 90 bp | TTGTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCGTGTTGCGGAGGTCCTaGAAGTACTTGAAGGTGGTG | + |
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Preference number: 4 (lower is better) Translates to: LWLKILLQASQPGQAKVPVLRRS*KYLKVV Trigger: CACCACCTTCAAGTACTTCCAGGACCTCCGCAACAC...GGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | GTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGTCGATCCCAGTTCTGTaGGTTATCAGTCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: VAEDFITSKPAWSGQGSLSIPVL*VISQNQ Trigger: CTGGTTCTGACTGATAACTCACAGAACTGGGATCGA...CAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR GCA 90 bp | ACTCTACCACAAAGCTATAGAGTCACAAAGACTTCAGGAAGCAGAAGGAAGGGGTCTCCAAGCCTGTGTTaGGGAGGTCCTGGAAGTACT | + |
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Preference number: 4 (lower is better) Translates to: TLPQSYRVTKTSGSRRKGSPSLC*GGPGST Trigger: AGTACTTCCAGGACCTCCGCAACACAGGCTTGGAGA...CCCCTTCCTTCTGCTTCCTGAAGTCTTTGTGACTCTATAGCTTTGTGGTAGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS-3UTR GCA 90 bp | CAAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTTGGTAATACTTCCGCTTCTCCAAGCCTGTGTTaGGGAGGTCCTGGAAGTACT | + |
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Preference number: 4 (lower is better) Translates to: QSKEHGTECQSCLGNTSASPSLC*GGPGST Trigger: AGTACTTCCAGGACCTCCGCAACACAGGCTTGGAGA...AGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| CDS-3UTR GCA 90 bp | GTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGGAACACGGGACAGAATaGCAGTCTTGTCTTGGTAAT | + |
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Preference number: 4 (lower is better) Translates to: VAEDFITSKPAWSGQGSLEHGTE*QSCLGN Trigger: ATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTC...CAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR TCA 90 bp | GACTCCCCAGTTACATTGGATGTGAATGAGCGAGACAGAGCTGTAGAAAACCCTTCGATCCCAGTTCTGTaGGTTATCAGTCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: DSPVTLDVNERDRAVENPSIPVL*VISQNQ Trigger: CTGGTTCTGACTGATAACTCACAGAACTGGGATCGA...AGGGTTTTCTACAGCTCTGTCTCGCTCATTCACATCCAATGTAACTGGGGAGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS-3UTR TCA 90 bp | CAAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTTGGTAATACTTCCGCTTCGATCCCAGTTCTGTaGGTTATCAGTCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: QSKEHGTECQSCLGNTSASIPVL*VISQNQ Trigger: CTGGTTCTGACTGATAACTCACAGAACTGGGATCGA...AGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| CDS-3UTR CAA 90 bp | CTCTTCTCACTCAGAGGAGGCAGGTCGGTGGGTAGGGGGTACCGGTCCGGCTCCTTCTCCAAGCCTGTGTaGCGGAGGTCCTGGAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: LFSLRGGRSVGRGYRSGSFSKPV*RRSWKY Trigger: GTACTTCCAGGACCTCCGCAACACAGGCTTGGAGAA...GGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTCCTCTGAGTGAGAAGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000114743.2 ENSMUST00000199129.5 |
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| CDS-3UTR CAA 90 bp | GCAGGTCGGTGGGTAGGGGGTACCGGTCCGGCTCCTTCACAGGAAGTACAAAGTTTCTCCAAGCCTGTGTaGCGGAGGTCCTGGAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: AGRWVGGTGPAPSQEVQSFSKPV*RRSWKY Trigger: GTACTTCCAGGACCTCCGCAACACAGGCTTGGAGAA...ACTTTGTACTTCCTGTGAAGGAGCCGGACCGGTACCCCCTACCCACCGACCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000199129.5 |
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| CDS-3UTR CAA 90 bp | CTCTTCTCACTCAGAGGAGGCAGGTCGGTGGGTAGGGGGTACCGGTCCGGCTCCACACACAGCAGGTTGTaGCTGTACCACCTTGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: LFSLRGGRSVGRGYRSGSTHSRL*LYHLVK Trigger: TTTTACAAGGTGGTACAGCAACAACCTGCTGTGTGT...GGAGCCGGACCGGTACCCCCTACCCACCGACCTGCCTCCTCTGAGTGAGAAGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS-3UTR CAA 90 bp | GTGGCTGAAGATTTTATTACAAGCAAGCCAGCCTGGTCAGGCCAAGGTTCCCTGTTCTCCAAGCCTGTGTaGCGGAGGTCCTGGAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: VAEDFITSKPAWSGQGSLFSKPV*RRSWKY Trigger: GTACTTCCAGGACCTCCGCAACACAGGCTTGGAGAA...CAGGGAACCTTGGCCTGACCAGGCTGGCTTGCTTGTAATAAAATCTTCAGCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS GCA 90 bp | CCGGCTCCTTCACAGGAAGTACAAAGTAAGGAACACGGGACAGAATaGCAGTCTTGTCTTGGTAATACTTCCGCTGCTGCTGGACTGTCT | + |
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Preference number: 5 (lower is better) Translates to: PAPSQEVQSKEHGTE*QSCLGNTSAAAGLS Trigger: AGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTGTACTTCCTGTGAAGGAGCCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS-3UTR CAA 90 bp | AGTAAAGGTCCCGCCTTTGGCGCTCTTGAGAGGAAACTCTCTTCCCTGATGGGAAGAACACACAGCAGGTaGTTGCTGTACCACCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: SKGPAFGALERKLSSLMGRTHSR*LLYHLV Trigger: TACAAGGTGGTACAGCAACAACCTGCTGTGTGTTCT...TCCCATCAGGGAAGAGAGTTTCCTCTCAAGAGCGCCAAAGGCGGGACCTTTACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS-3UTR CAA 90 bp | GTAAAAACTCTACCACAAAGCTATAGAGTCACAAAGACTTCAGGAAGCAGAAGGTTCTCCAAGCCTGTGTaGCGGAGGTCCTGGAAGTAC | + |
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Preference number: 5 (lower is better) Translates to: VKTLPQSYRVTKTSGSRRFSKPV*RRSWKY Trigger: GTACTTCCAGGACCTCCGCAACACAGGCTTGGAGAA...CCTTCTGCTTCCTGAAGTCTTTGTGACTCTATAGCTTTGTGGTAGAGTTTTTAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000127815.2 |
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| CDS CAA 90 bp | AGGAAGTACAAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTaGGTAATACTTCCGCTGCTGCTGGACTGTCTACAGCTCGGCAAA | + |
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Preference number: 6 (lower is better) Translates to: RKYKVRNTGQNASLV*VILPLLLDCLQLGK Trigger: TTTGCCGAGCTGTAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTGTACTTCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS CAA 72 bp | GGACTGTCTACAGCTCGGCAAAGAACACACAGCAGGTaGTTGCTGTACCACCTTGTAAAAGTTAGTGAGCTC | + |
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Preference number: 6 (lower is better) Translates to: GLSTARQRTHSR*LLYHLVKVSEL Trigger: GAGCTCACTAACTTTTACAAGGTGGTACAGCAACAACCTGCTGTGTGTTCTTTGCCGAGCTGTAGACAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS CAA 72 bp | AAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTaGGTAATACTTCCGCTGCTGCTGGACTGTCTACAG | + |
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Preference number: 6 (lower is better) Translates to: KVRNTGQNASLV*VILPLLLDCLQ Trigger: CTGTAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS CAA 72 bp | AAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTaGGTAATACTTCCGCTGCTGCTGGACTGTCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: KVRNTGQNASLV*VILPLLLDCLV Trigger: TACAAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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| CDS CAA 72 bp | CTGTCTACAGCTCGGCAAAGAACACACAGCAGGTTGTaGCTGTACCACCTTGTAAAAGTTAGTGAGCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: LSTARQRTHSRL*LYHLVKVSELS Trigger: ACTGAGCTCACTAACTTTTACAAGGTGGTACAGCAACAACCTGCTGTGTGTTCTTTGCCGAGCTGTAGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000114743.2 |
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| CDS CAA 90 bp | AGGAAGTACAAAGTAAGGAACACGGGACAGAATGCCAGTCTTGTCTaGGTAATACTTCCGCTGCTGCTGGACTGTCTTGTAAAAGTTAGT | + |
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Preference number: 6 (lower is better) Translates to: RKYKVRNTGQNASLV*VILPLLLDCLVKVS Trigger: ACTAACTTTTACAAGACAGTCCAGCAGCAGCGGAAGTATTACCAAGACAAGACTGGCATTCTGTCCCGTGTTCCTTACTTTGTACTTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031078.10 |
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