RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM13C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043259

Ensembl transcript IDs: ENSMUST00000062883.7, ENSMUST00000105436.9, ENSMUST00000173042.9

Found 272 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CATTTGACTCTGGATTTCAGTTTGGCATGGAGGCTAAATGCTTTTTaGCAATCCCAACATTACCTGTTATTTCCCTATTTAAATGCCTTG +
Preference number: 1 (lower is better)
Translates to: HLTLDFSLAWRLNAF*QSQHYLLFPYLNAL
Trigger: CAAGGCATTTAAATAGGGAAATAACAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGTCAAATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CCA 90 bp CAGTTTTTGAGACACTTACATTTGACTCTGGATTTCAGTTTGGCATaGAGGCTAAATGCTTTTTGCCAATCCCAACATTACCTGTTATTT +
Preference number: 1 (lower is better)
Translates to: QFLRHLHLTLDFSLA*RLNAFCQSQHYLLF
Trigger: AAATAACAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGTCAAATGTAAGTGTCTCAAAAACTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CCA 90 bp ATGTTGTCTCGCTTAAATTACCTTCCTTCTAGCTGTTTTCCTCCCTaGGTGAAGAGCAGAAATTTTCTTTGTCTCACCAATGTATTTAAA +
Preference number: 1 (lower is better)
Translates to: MLSRLNYLPSSCFPP*VKSRNFLCLTNVFK
Trigger: TTTAAATACATTGGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTAATTTAAGCGAGACAACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR GCA 90 bp AAGCAAATAAAAGGTCTCTTGGTGATTTCCAAGCTTTTCACCCTGTaGAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAA +
Preference number: 1 (lower is better)
Translates to: KQIKGLLVISKLFTL*RMNAAHKKVISLYK
Trigger: TTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAGAGACCTTTTATTTGCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR TCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCAACTTGACTTCATCTTaGGAGGGAAGTGAGCAGAGC +
Preference number: 2 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTNLTSS*EGSEQS
Trigger: GCTCTGCTCACTTCCCTCTCAAGATGAAGTCAAGTT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR TCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTAACTTGACTTCATCTTaGGAGGGAAGTGAGCAGAGC +
Preference number: 2 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSNLTSS*EGSEQS
Trigger: GCTCTGCTCACTTCCCTCTCAAGATGAAGTCAAGTT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTAGGCTAAATGCTTTTTaGCAATCCCAACATTACCTG +
Preference number: 2 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSRLNAF*QSQHYL
Trigger: CAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATACATGCCATCCAAGTaGACTTTGGTAACTGGAAAT +
Preference number: 2 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEYMPSK*TLVTGN
Trigger: ATTTCCAGTTACCAAAGTTCACTTGGATGGCATGTA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAAGGCTAAATGCTTTTTaGCAATCCCAACATTACCTG +
Preference number: 2 (lower is better)
Translates to: LGDFQAFHPVQNECSSQERLNAF*QSQHYL
Trigger: CAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCT...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTATACTATCTCTAAAGTaGTTCCGTTTTCAGTACATC +
Preference number: 2 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSILSLK*FRFQYI
Trigger: GATGTACTGAAAACGGAAGCACTTTAGAGATAGTAT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTAGGCTAAATGCTTTTTaGCAATCCCAACATTACCTG +
Preference number: 2 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCRLNAF*QSQHYL
Trigger: CAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAAATTCACAAAGTACATaGCATCCAAGTGAACTTTGG +
Preference number: 2 (lower is better)
Translates to: LGDFQAFHPVQNECSSQENSQST*HPSELW
Trigger: CCAAAGTTCACTTGGATGGCATGTACTTTGTGAATT...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTGATTTCAGTTTGGCATaGAGGCTAAATGCTTTTTGC +
Preference number: 2 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCDFSLA*RLNAFC
Trigger: GCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATC...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CAA 90 bp ATTAGACAGTTTTTGAGACACTTACATTTGACTCTGGATTTCAGTTaGGCATGGAGGCTAAATGCTTTTTGCCAATCCCAACATTACCTG +
Preference number: 2 (lower is better)
Translates to: IRQFLRHLHLTLDFS*AWRLNAFCQSQHYL
Trigger: CAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGTCAAATGTAAGTGTCTCAAAAACTGTCTAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CAA 90 bp ACATTTGACTCTGGATTTCAGTTTGGCATGGAGGCTAAATGCTTTTaGCCAATCCCAACATTACCTGTTATTTCCCTATTTAAATGCCTT +
Preference number: 2 (lower is better)
Translates to: TFDSGFQFGMEAKCF*PIPTLPVISLFKCL
Trigger: AAGGCATTTAAATAGGGAAATAACAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGTCAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR TCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAAAACCAGTAAGTGTGTaGGTGGAGAAAAAGCAAGAT +
Preference number: 2 (lower is better)
Translates to: FMKAITLIHKQQVNTERTKPVSV*VEKKQD
Trigger: ATCTTGCTTTTTCTCCACTCACACACTTACTGGTTT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR TCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAAGCAATAGGAAAATCTaGGTTTCTTCAACACCATGC +
Preference number: 2 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSNRKI*VSSTPC
Trigger: GCATGGTGTTGAAGAAACTCAGATTTTCCTATTGCT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGGATTTCAGTTTGGCATaGAGGCTAAATGCTTTTTGC +
Preference number: 2 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQDFSLA*RLNAFC
Trigger: GCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATC...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGAATTCACAAAGTACATaGCATCCAAGTGAACTTTGG +
Preference number: 2 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQNSQST*HPSELW
Trigger: CCAAAGTTCACTTGGATGGCATGTACTTTGTGAATT...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR GCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGATACTATCTCTAAAGTaGTTCCGTTTTCAGTACATC +
Preference number: 2 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQILSLK*FRFQYI
Trigger: GATGTACTGAAAACGGAAGCACTTTAGAGATAGTAT...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTACTCTGGATTTCAGTTaGGCATGGAGGCTAAATGCT +
Preference number: 3 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSTLDFS*AWRLNA
Trigger: AGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CCA 72 bp CGCTTAAATTACCTTCCTTCTAGCTGTTTTCCTCCCTaGGTGAAGAGCAGAAATTTTCTTTGTCTCACCAAT +
Preference number: 3 (lower is better)
Translates to: RLNYLPSSCFPP*VKSRNFLCLTN
Trigger: ATTGGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTAATTTAAGCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAACTCTGGATTTCAGTTaGGCATGGAGGCTAAATGCT +
Preference number: 3 (lower is better)
Translates to: FMKAITLIHKQQVNTERTTLDFS*AWRLNA
Trigger: AGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR GCA 72 bp AAAGGTCTCTTGGTGATTTCCAAGCTTTTCACCCTGTaGAGAATGAATGCAGCTCACAAGAAAGTTATTTCA +
Preference number: 3 (lower is better)
Translates to: KGLLVISKLFTL*RMNAAHKKVIS
Trigger: TGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAGAGACCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR GCA 72 bp CTGGATTTCAGTTTGGCATGGAGGCTAAATGCTTTTTaGCAATCCCAACATTACCTGTTATTTCCCTATTTA +
Preference number: 3 (lower is better)
Translates to: LDFSLAWRLNAF*QSQHYLLFPYL
Trigger: TAAATAGGGAAATAACAGGTAATGTTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATCGGCAGGCGCACTCTaGGTGGAAGCTGGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESAGAL*VEAGAG
Trigger: CCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTCGGCAGGCGCACTCTaGGTGGAAGCTGGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLSAGAL*VEAGAG
Trigger: CCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTCGGCAGGCGCACTCTaGGTGGAAGCTGGGGCCGGG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCSAGAL*VEAGAG
Trigger: CCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCCTGCTGGCTGCTGGGTaGAGATGGAGCGGACTCAGG +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTLLAAG*RWSGLR
Trigger: CCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAG...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAACCGGTGTTCCTGCTCTaGCCTGGCACTCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEPVFLL*PGTLTG
Trigger: GCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGG...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTACTCTGCGTGGAAGCTaGGGCCGGGTCCTTAACTCC +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSTLRGS*GRVLNS
Trigger: GGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTCTGCTGGCTGCTGGGTaGAGATGGAGCGGACTCAGG +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLLLAAG*RWSGLR
Trigger: CCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAG...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAACTGCTGGCTGCTGGGTaGAGATGGAGCGGACTCAGG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQELLAAG*RWSGLR
Trigger: CCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAG...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTCGAGGAGGACGGGCATaGTGGCCTCGTGTAAGTTGG +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSRGGRA*WPRVSW
Trigger: CCAACTTACACGAGGCCACCATGCCCGTCCTCCTCG...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTAGACTGGAGGTCTTCTaGGGTACCGTCGGCGTCACC +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLRLEVF*GTVGVT
Trigger: GGTGACGCCGACGGTACCTCAGAAGACCTCCAGTCT...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTAGCTTCGTGGCATCATaGACTGCTGGCTGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSSFVAS*TAGCWV
Trigger: CACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCAGCTTCGTGGCATCATaGACTGCTGGCTGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTSFVAS*TAGCWV
Trigger: CACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCCGGTGTTCCTGCTCTaGCCTGGCACTCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCPVFLL*PGTLTG
Trigger: GCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGTTCCTGCTCTGCCCTaGCACTCTGACTGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEVPALP*HSDWLG
Trigger: ACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAAC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGCTGCTGGGTGGAGATaGAGCGGACTCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEAAGWR*SGLRVQ
Trigger: TTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTGCTGCTGGGTGGAGATaGAGCGGACTCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLAAGWR*SGLRVQ
Trigger: TTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGC...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTCGAGGAGGACGGGCATaGTGGCCTCGTGTAAGTTGG +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLRGGRA*WPRVSW
Trigger: CCAACTTACACGAGGCCACCATGCCCGTCCTCCTCG...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCCCGTTTCCTGGCACCTaGAGATGCTGCTTTGTGGAC +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTPFPGT*RCCFVD
Trigger: GTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGG...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTAGACTGGAGGTCTTCTaGGGTACCGTCGGCGTCACC +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCRLEVF*GTVGVT
Trigger: GGTGACGCCGACGGTACCTCAGAAGACCTCCAGTCT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTAGCTTCGTGGCATCATaGACTGCTGGCTGCTGGGTG +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLSFVAS*TAGCWV
Trigger: CACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCT...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTGGGTCCTTAACTCCGTaGACCTGGCCATCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSGSLTP*TWPSSS
Trigger: GGAAGAAGATGGCCAGGTGCACGGAGTTAAGGACCC...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAAGCTGTGTAATGGTCTaGGGCTCCTTGCCGTCCCCA +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESCVMV*GSLPSP
Trigger: TGGGGACGGCAAGGAGCCGCAGACCATTACACAGCT...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCCCACGGCTTCCGACTTaGCATTTTCTCTGGGGACTG +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTPRLPT*HFLWGL
Trigger: CAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGG...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGGCACTCTGACTGGCTaGGTACCACATGCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTGTLTG*VPHALS
Trigger: AGACAGAGCATGTGGTACCCAGCCAGTCAGAGTGCC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTACTCTGCGTGGAAGCTaGGGCCGGGTCCTTAACTCC +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCTLRGS*GRVLNS
Trigger: GGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTGGCATCATGAACTGCTaGCTGCTGGGTGGAGATGGA +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSGIMNC*LLGGDG
Trigger: TCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCC...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCGAGGAGGACGGGCATaGTGGCCTCGTGTAAGTTGG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCRGGRA*WPRVSW
Trigger: CCAACTTACACGAGGCCACCATGCCCGTCCTCCTCG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTCCGTTTCCTGGCACCTaGAGATGCTGCTTTGTGGAC +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLPFPGT*RCCFVD
Trigger: GTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGG...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTGGTAAAGAGGGTTGCTaGCTTCCCTGTGGACAGTCT +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSGKEGC*LPCGQS
Trigger: AGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACC...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTCGTGGCATCATGAACTaGTGGCTGCTGGGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLRGIMN*WLLGGD
Trigger: ATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACG...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGTTTTGGCCACATCCTaGTTGCTGATGAGGACCTCC +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTVLATS*LLMRTS
Trigger: GGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAAC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCACATGCTCTGTCTCCTaGCTTTCTCCGTGGTTCCGA +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTTCSVS*LSPWFR
Trigger: TCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTGGCACTCTGACTGGCTaGGTACCACATGCTCTGTCT +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLGTLTG*VPHALS
Trigger: AGACAGAGCATGTGGTACCCAGCCAGTCAGAGTGCC...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATGGCCATCTTCTTCCTaGGTCGTCAGAAACGCGGAG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEWPSSS*VVRNAE
Trigger: CTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGGCATCATGAACTGCTaGCTGCTGGGTGGAGATGGA +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEGIMNC*LLGGDG
Trigger: TCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCTCGCCAGAGGAGCCTaGTTCGGGGCCCACGGCTTC +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQLARGA*FGAHGF
Trigger: GAAGCCGTGGGCCCCGAACCAGGCTCCTCTGGCGAG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTACTCGCCAGAGGAGCCTaGTTCGGGGCCCACGGCTTC +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVLARGA*FGAHGF
Trigger: GAAGCCGTGGGCCCCGAACCAGGCTCCTCTGGCGAG...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCATCCTGTCTTCCTTCTaGGGGCTTCTTCCCGTCTGT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTILSSF*GLLPVC
Trigger: ACAGACGGGAAGAAGCCCCCAGAAGGAAGACAGGAT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTTTGTGGACTCTCATaGGCCGGTGTTCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCLCGLS*AGVPAL
Trigger: CAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTCAGCTTTAGTTCTTTaGGCTGTTTGCGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTSALVL*AVCAPW
Trigger: CCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGGTAAAGAGGGTTGCTaGCTTCCCTGTGGACAGTCT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEGKEGC*LPCGQS
Trigger: AGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGAAGATGCTGCTTTGTaGACTCTCATGAGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTEDAAL*TLMSRC
Trigger: ACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAAGTCGCACCGTTTCCTaGCACCTGAAGATGCTGCTT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESRTVS*HLKMLL
Trigger: AAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACT...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTGGCCATCTTCTTCCTaGGTCGTCAGAAACGCGGAG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCWPSSS*VVRNAE
Trigger: CTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTGGCATCATGAACTGCTaGCTGCTGGGTGGAGATGGA +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCGIMNC*LLGGDG
Trigger: TCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCC...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTGCTGTTTGCGCCCCTTaGCCAAATCGTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSAVCAP*PNRSSI
Trigger: AATGGATGAACGATTTGGCCAAGGGGCGCAAACAGC...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTAGTTTCTCGGAGATaGTCGAGGAGGACGGGCATG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCLVSRR*SRRTGM
Trigger: CATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATGCGAATCTTCCTCTTaGGGCTTTGGATGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQECESSS*GFGCAW
Trigger: CCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTCAGCTTTAGTTCTTTaGGCTGTTTGCGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLSALVL*AVCAPW
Trigger: CCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTCGGCAAGATTTGCTTaGTACCTCTGCATCGGTCAT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTSARFA*YLCIGH
Trigger: ATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTGGCTGGGTACCACATaGTCTGTCTCCTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCWLGTT*SVSWLS
Trigger: AGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCCGGTGTTCCTGCTCTaGCCTGGCACTCTGACTGGC +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQPVFLL*PGTLTG
Trigger: GCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTGTTTTGGCCACATCCTaGTTGCTGATGAGGACCTCC +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCVLATS*LLMRTS
Trigger: GGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAAC...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTACATGCTCTGTCTCCTaGCTTTCTCCGTGGTTCCGA +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCTCSVS*LSPWFR
Trigger: TCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAGTTCCTGCTCTGCCCTaGCACTCTGACTGGCTGGGT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTVPALP*HSDWLG
Trigger: ACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAAC...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAACTCTGCGTGGAAGCTaGGGCCGGGTCCTTAACTCC +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTTLRGS*GRVLNS
Trigger: GGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAGCTGCTGGGTGGAGATaGAGCGGACTCAGGGTCCAA +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTAAGWR*SGLRVQ
Trigger: TTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGC...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTTCCTCTTGAGGCTTTaGATGTGCTTGGTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTFLLRL*MCLVSC
Trigger: ACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTGCTGTTTGCGCCCCTTaGCCAAATCGTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLAVCAP*PNRSSI
Trigger: AATGGATGAACGATTTGGCCAAGGGGCGCAAACAGC...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTTGCTGACTTCCCTGTaGACAGTCTTCATCAGAGTC +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSLLTSL*TVFIRV
Trigger: GACTCTGATGAAGACTGTCCACAGGGAAGTCAGCAA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTGGCCTCGTGTAAGTTaGACATGGAGAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCWPRVS*TWRELA
Trigger: AGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTATCCTGTCTTCCTTCTaGGGGCTTCTTCCCGTCTGT +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCILSSF*GLLPVC
Trigger: ACAGACGGGAAGAAGCCCCCAGAAGGAAGACAGGAT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTCTCTTCCTCAATTGTTaGGATAAGGGATGGTGTCGG +
Preference number: 4 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSLFLNC*DKGWCR
Trigger: CCGACACCATCCCTTATCCCAACAATTGAGGAAGAG...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTATTGTCTTCATCTCTaGGCCCAGAGCAGTCGTCTT +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLYCLHL*AQSSRL
Trigger: AAGACGACTGCTCTGGGCTCAGAGATGAAGACAATA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATATTGTCTTCATCTCTaGGCCCAGAGCAGTCGTCTT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEYCLHL*AQSSRL
Trigger: AAGACGACTGCTCTGGGCTCAGAGATGAAGACAATA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAAGACTGGAGGTCTTCTaGGGTACCGTCGGCGTCACC +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVRLEVF*GTVGVT
Trigger: GGTGACGCCGACGGTACCTCAGAAGACCTCCAGTCT...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATCGGCAAGATTTGCTTaGTACCTCTGCATCGGTCAT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESARFA*YLCIGH
Trigger: ATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGAGTCCTCTTCCTCCTaGATTGTTGGGATAAGGGAT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEESSSS*IVGIRD
Trigger: ATCCCTTATCCCAACAATTCAGGAGGAAGAGGACTC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCAGTTACAGCGGCGCTaGCGAAGGAATTATCCTGAA +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCQLQRR*RRNYPE
Trigger: TTCAGGATAATTCCTTCGGCAGCGCCGCTGTAACTG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAAGCTGTGTAATGGTCTaGGGCTCCTTGCCGTCCCCA +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSCVMV*GSLPSP
Trigger: TGGGGACGGCAAGGAGCCGCAGACCATTACACAGCT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCATGAGGTTCTTGTCTTaGTTAGTTCCCTTCCCATCG +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTMRFLS*LVPFPS
Trigger: CGATGGGAAGGGAACTAAGCAAGACAAGAACCTCAT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACCCTGGCACTCTGACTaGCTGGGTACCACATGCTCT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTPWHSD*LGTTCS
Trigger: AGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATCCAAAAGCATCCTTTaGCCAAATGGTAGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESKSIL*PNGSPL
Trigger: CAGAGGGCTACCATTTGGCCAAAGGATGCTTTTGGA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTGTTGGGATAAGGGATaGTGTCGGCAAGATTTGCTT +
Preference number: 4 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTCWDKG*CRQDLL
Trigger: AAGCAAATCTTGCCGACACCATCCCTTATCCCAACA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTTGCTGACTTCCCTGTaGACAGTCTTCATCAGAGTC +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLLLTSL*TVFIRV
Trigger: GACTCTGATGAAGACTGTCCACAGGGAAGTCAGCAA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATCCAAGTTGAACCTCTaGCTTTGGCTAAAGATGGAG +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESKLNL*LWLKME
Trigger: CTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACGTGGCATCATGAACTaGTGGCTGCTGGGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTRGIMN*WLLGGD
Trigger: ATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACCACGGCTTCCGACTTaGCATTTTCTCTGGGGACTG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTPRLPT*HFLWGL
Trigger: CAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTACCCTGGCACTCTGACTaGCTGGGTACCACATGCTCT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVPWHSD*LGTTCS
Trigger: AGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGG...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCCCTGGCACTCTGACTaGCTGGGTACCACATGCTCT +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQPWHSD*LGTTCS
Trigger: AGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTCCAAAAGCATCCTTTaGCCAAATGGTAGCCCTCTG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCSKSIL*PNGSPL
Trigger: CAGAGGGCTACCATTTGGCCAAAGGATGCTTTTGGA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTTCCTCTTGAGGCTTTaGATGTGCTTGGTGAGCTGT +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCFLLRL*MCLVSC
Trigger: ACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTGTTGGGATAAGGGATaGTGTCGGCAAGATTTGCTT +
Preference number: 4 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLCWDKG*CRQDLL
Trigger: AAGCAAATCTTGCCGACACCATCCCTTATCCCAACA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATGTTGGGATAAGGGATaGTGTCGGCAAGATTTGCTT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQECWDKG*CRQDLL
Trigger: AAGCAAATCTTGCCGACACCATCCCTTATCCCAACA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAACCGAAGGAATTATCCTaGAGGCTGAAACAGAAACAA +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEPKELS*RLKQKQ
Trigger: TTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCGG...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCCGTTTCCTGGCACCTaGAGATGCTGCTTTGTGGAC +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQPFPGT*RCCFVD
Trigger: GTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATCATGTAAGTCCTGCTaGGTTCCAAAAGCATCCTTT +
Preference number: 4 (lower is better)
Translates to: LGDFQAFHPVQNECSSQESCKSC*VPKASF
Trigger: AAAGGATGCTTTTGGAACTCAGCAGGACTTACATGA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAGGTAAAGAGGGTTGCTaGCTTCCCTGTGGACAGTCT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTGKEGC*LPCGQS
Trigger: AGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACC...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATGGCTGGGTACCACATaGTCTGTCTCCTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTWLGTT*SVSWLS
Trigger: AGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTACGTGGCATCATGAACTaGTGGCTGCTGGGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVRGIMN*WLLGGD
Trigger: ATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACG...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTATGAGGTTCTTGTCTTaGTTAGTTCCCTTCCCATCG +
Preference number: 4 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCMRFLS*LVPFPS
Trigger: CGATGGGAAGGGAACTAAGCAAGACAAGAACCTCAT...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAAGTCGCACCGTTTCCTaGCACCTGAAGATGCTGCTT +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSRTVS*HLKMLL
Trigger: AAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACCAGACTCGAGGGCTTaGAGCTTCAGCAAGGAATTC +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTPDSRA*SFSKEF
Trigger: GAATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATGGCCATCTTCTTCCTaGGTCGTCAGAAACGCGGAG +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVWPSSS*VVRNAE
Trigger: CTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCTAGTTTCTCGGAGATaGTCGAGGAGGACGGGCATG +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQLVSRR*SRRTGM
Trigger: CATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATCAGCTTTAGTTCTTTaGGCTGTTTGCGCCCCTTGG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSALVL*AVCAPW
Trigger: CCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACAGTTACAGCGGCGCTaGCGAAGGAATTATCCTGAA +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTQLQRR*RRNYPE
Trigger: TTCAGGATAATTCCTTCGGCAGCGCCGCTGTAACTG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATGGCTGGGTACCACATaGTCTGTCTCCTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVWLGTT*SVSWLS
Trigger: AGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAGGTGTCGGCAAGATTTaGTTGATACCTCTGCATCGG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTGVGKI*LIPLHR
Trigger: CCGATGCAGAGGTATCAAGCAAATCTTGCCGACACC...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGTTTTGGCCACATCCTaGTTGCTGATGAGGACCTCC +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVVLATS*LLMRTS
Trigger: GGAGGTCCTCATCAGCAAGCAGGATGTGGCCAAAAC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGACATGCTCTGTCTCCTaGCTTTCTCCGTGGTTCCGA +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQTCSVS*LSPWFR
Trigger: TCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGT...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATGGCCTCGTGTAAGTTaGACATGGAGAGAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVWPRVS*TWRELA
Trigger: AGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATGCGAATCTTCCTCTTaGGGCTTTGGATGTGCTTGG +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVCESSS*GFGCAW
Trigger: CCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGGTGTCGGCAAGATTTaGTTGATACCTCTGCATCGG +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVGVGKI*LIPLHR
Trigger: CCGATGCAGAGGTATCAAGCAAATCTTGCCGACACC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGGGTGTCGGCAAGATTTaGTTGATACCTCTGCATCGG +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQGVGKI*LIPLHR
Trigger: CCGATGCAGAGGTATCAAGCAAATCTTGCCGACACC...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGGAAGATGCTGCTTTGTaGACTCTCATGAGCCGGTGT +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQEDAAL*TLMSRC
Trigger: ACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTC...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGCTGTTTGCGCCCCTTaGCCAAATCGTTCATCCATT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVAVCAP*PNRSSI
Trigger: AATGGATGAACGATTTGGCCAAGGGGCGCAAACAGC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATCCAAGTTGAACCTCTaGCTTTGGCTAAAGATGGAG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSKLNL*LWLKME
Trigger: CTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGAGTCCTCTTCCTCCTaGATTGTTGGGATAAGGGAT +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVESSSS*IVGIRD
Trigger: ATCCCTTATCCCAACAATTCAGGAGGAAGAGGACTC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATTGAGGCTTTGGATGTaGTTGGTGAGCTGTGTAATG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTLRLWM*LVSCVM
Trigger: CATTACACAGCTCACCAAGCACATCCAAAGCCTCAA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAATGAGGTTCTTGTCTTaGTTAGTTCCCTTCCCATCG +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTMRFLS*LVPFPS
Trigger: CGATGGGAAGGGAACTAAGCAAGACAAGAACCTCAT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAATGGAGAGAGCTGGCTaGTTCCCTTCTTTCTTTTCA +
Preference number: 4 (lower is better)
Translates to: FMKAITLIHKQQVNTERTMERAG*FPSFFS
Trigger: TGAAAAGAAAGAAGGGAAGCAGCCAGCTCTCTCCAT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR GCA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATTGAGGCTTTGGATGTaGTTGGTGAGCTGTGTAATG +
Preference number: 4 (lower is better)
Translates to: TANTISKVLPFSVHQNYVLRLWM*LVSCVM
Trigger: CATTACACAGCTCACCAAGCACATCCAAAGCCTCAA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CAA 72 bp TTTTTGAGACACTTACATTTGACTCTGGATTTCAGTTaGGCATGGAGGCTAAATGCTTTTTGCCAATCCCAA +
Preference number: 4 (lower is better)
Translates to: FLRHLHLTLDFS*AWRLNAFCQSQ
Trigger: TTGGGATTGGCAAAAAGCATTTAGCCTCCATGCCAAACTGAAATCCAGAGTCAAATGTAAGTGTCTCAAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGCCGAAGGAATTATCCTaGAGGCTGAAACAGAAACAA +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQPKELS*RLKQKQ
Trigger: TTGTTTCTGTTTCAGCCTTCAGGATAATTCCTTCGG...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR TCA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGTCATGTAAGTCCTGCTaGGTTCCAAAAGCATCCTTT +
Preference number: 4 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQSCKSC*VPKASF
Trigger: AAAGGATGCTTTTGGAACTCAGCAGGACTTACATGA...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
3UTR CAA 72 bp TCCCAACATTACCTGTTATTTCCCTATTTAAATGCCTaGGTTGGGTATAATTATACTAGCTTTTCCTTTGTC +
Preference number: 4 (lower is better)
Translates to: SQHYLLFPYLNA*VGYNYTSFSFV
Trigger: GACAAAGGAAAAGCTAGTATAATTATACCCAACCAAGGCATTTAAATAGGGAAATAACAGGTAATGTTGGGA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 90 bp GCTGGCATGGGATCTGCAGGATCTGCGCTGTCGGCAGGCGCACTCTaGGTGGAAGCTGGGGCCGGGTCCTTAACTCCGTGCACCTGGCCA +
Preference number: 5 (lower is better)
Translates to: AGMGSAGSALSAGAL*VEAGAGSLTPCTWP
Trigger: TGGCCAGGTGCACGGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 90 bp GTCACCCGGTGCATCCTTATGAGCTGGCATGGGATCTGCAGGATCTaGGCTGTCGGCAGGCGCACTCTGCGTGGAAGCTGGGGCCGGGTC +
Preference number: 5 (lower is better)
Translates to: VTRCILMSWHGICRI*AVGRRTLRGSWGRV
Trigger: GACCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCACCGGGTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 90 bp ACCGTCGGCGTCACCCGGTGCATCCTTATGAGCTGGCATGGGATCTaGAGGATCTGCGCTGTCGGCAGGCGCACTCTGCGTGGAAGCTGG +
Preference number: 5 (lower is better)
Translates to: TVGVTRCILMSWHGI*RICAVGRRTLRGSW
Trigger: CCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCACCGGGTGACGCCGACGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp GCTGGGGCCGGGTCCTTAACTCCGTGCACCTGGCCATCTTCTTCCTaGGTCGTCAGAAACGCGGAGCACAGACCAGACTCGAGGGCTTGG +
Preference number: 5 (lower is better)
Translates to: AGAGSLTPCTWPSSS*VVRNAEHRPDSRAW
Trigger: CCAAGCCCTCGAGTCTGGTCTGTGCTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCAGGTGCACGGAGTTAAGGACCCGGCCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp CTGCGGCTCCTTGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGTaGCATCATGAACTGCTGGCTGCTGGGTGGAGATGGAGCGGACTC +
Preference number: 5 (lower is better)
Translates to: LRLLAVPTATSGRAS*HHELLAAGWRWSGL
Trigger: GAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp CCTTGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGTGGCATCATaGACTGCTGGCTGCTGGGTGGAGATGGAGCGGACTCAGGGTCCA +
Preference number: 5 (lower is better)
Translates to: PCRPHCHIGKSFVAS*TAGCWVEMERTQGP
Trigger: TGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp AGGAGCCTGGTTCGGGGCCCACGGCTTCCGACTTGCCATTTTCTCTaGGGACTGGAGGCTGTTCACAGGACAGGTTTCTCCGAGGGCCCT +
Preference number: 5 (lower is better)
Translates to: RSLVRGPRLPTCHFL*GLEAVHRTGFSEGP
Trigger: AGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGGCCCCGAACCAGGCTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 90 bp GGTGTTCCTGCTCTGCCCTGGCACTCTGACTGGCTGGGTACCACATaGTCTGTCTCCTGGCTTTCTCCGTGGTTCCGACCACTCTCGGCT +
Preference number: 5 (lower is better)
Translates to: GVPALPWHSDWLGTT*SVSWLSPWFRPLSA
Trigger: AGCCGAGAGTGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp CGCACCGTTTCCTGGCACCTGAAGATGCTGCTTTGTGGACTCTCATaGGCCGGTGTTCCTGCTCTGCCCTGGCACTCTGACTGGCTGGGT +
Preference number: 5 (lower is better)
Translates to: RTVSWHLKMLLCGLS*AGVPALPWHSDWLG
Trigger: ACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp TCCCCACTGCCACATCGGGAAGAGCTTCGTGGCATCATGAACTGCTaGCTGCTGGGTGGAGATGGAGCGGACTCAGGGTCCAAGTTGAAC +
Preference number: 5 (lower is better)
Translates to: SPLPHREELRGIMNC*LLGGDGADSGSKLN
Trigger: GTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp TCTGACTGGCTGGGTACCACATGCTCTGTCTCCTGGCTTTCTCCGTaGTTCCGACCACTCTCGGCTCTGAGGATGGATTTGGGCTTTCGG +
Preference number: 5 (lower is better)
Translates to: SDWLGTTCSVSWLSP*FRPLSALRMDLGFR
Trigger: CCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 90 bp TTCCTCTTGAGGCTTTGGATGTGCTTGGTGAGCTGTGTAATGGTCTaGGGCTCCTTGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGT +
Preference number: 5 (lower is better)
Translates to: FLLRLWMCLVSCVMV*GSLPSPLPHREELR
Trigger: ACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp TGGGGACTGGAGGCTGTTCACAGGACAGGTTTCTCCGAGGGCCCTTaGGCGTACTCCCTTGCTCTTCCGACAGCTTCAGCTTTAGTTCTT +
Preference number: 5 (lower is better)
Translates to: WGLEAVHRTGFSEGP*AYSLALPTASALVL
Trigger: AAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp AGGGCTTTCCGTAGCCTCTTCTTGTCAGCCCTAGTTTCTCGGAGATaGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTTGGACATG +
Preference number: 5 (lower is better)
Translates to: RAFRSLFLSALVSRR*SRRTGMVASCKLDM
Trigger: CATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAGGGCTGACAAGAAGAGGCTACGGAAAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp CTGCTGGGTGGAGATGGAGCGGACTCAGGGTCCAAGTTGAACCTCTaGCTTTGGCTAAAGATGGAGCACCGTGGTGACAGCAACGGATTG +
Preference number: 5 (lower is better)
Translates to: LLGGDGADSGSKLNL*LWLKMEHRGDSNGL
Trigger: CAATCCGTTGCTGTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp ACATCGGGAAGAGCTTCGTGGCATCATGAACTGCTGGCTGCTGGGTaGAGATGGAGCGGACTCAGGGTCCAAGTTGAACCTCTGACTTTG +
Preference number: 5 (lower is better)
Translates to: TSGRASWHHELLAAG*RWSGLRVQVEPLTL
Trigger: CAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp CTCGGAGATGGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTTaGACATGGAGAGAGCTGGCTGCTTCCCTTCTTTCTTTTCATCTG +
Preference number: 5 (lower is better)
Translates to: LGDGRGGRAWWPRVS*TWRELAASLLSFHL
Trigger: CAGATGAAAAGAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp GGAAGAGCTTCGTGGCATCATGAACTGCTGGCTGCTGGGTGGAGATaGAGCGGACTCAGGGTCCAAGTTGAACCTCTGACTTTGGCTAAA +
Preference number: 5 (lower is better)
Translates to: GRASWHHELLAAGWR*SGLRVQVEPLTLAK
Trigger: TTTAGCCAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp GATGGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTTGGACATaGAGAGAGCTGGCTGCTTCCCTTCTTTCTTTTCATCTGGTAGCA +
Preference number: 5 (lower is better)
Translates to: DGRGGRAWWPRVSWT*RELAASLLSFHLVA
Trigger: TGCTACCAGATGAAAAGAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 90 bp GGCTTTATGAGGTTCTTGTCTTGCTTAGTTCCCTTCCCATCGTCCTaGGGAGGGGTCTGTTCTCTCTTCTCCGGCACCACAGCATCTGAA +
Preference number: 5 (lower is better)
Translates to: GFMRFLSCLVPFPSS*GGVCSLFSGTTASE
Trigger: TTCAGATGCTGTGGTGCCGGAGAAGAGAGAACAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp TCACCGACAGGTAGGCGGGACACTGGATCTGGTAAAGAGGGTTGCTaGCTTCCCTGTGGACAGTCTTCATCAGAGTCCTCTTCCTCAATT +
Preference number: 5 (lower is better)
Translates to: SPTGRRDTGSGKEGC*LPCGQSSSESSSSI
Trigger: AATTGAGGAAGAGGACTCTGATGAAGACTGTCCACAGGGAAGTCAGCAACCCTCTTTACCAGATCCAGTGTCCCGCCTACCTGTCGGTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTTTCTCCGAGGGCCCTaGGGCGTACTCCCTTGCTCT +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLFLRGP*GVLPCS
Trigger: AGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGTGGCCTCGTGTAAGTaGGACATGGAGAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTVASCK*DMERAG
Trigger: GCCAGCTCTCTCCATGTCCAACTTACACGAGGCCAC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp AAAGCATCCTTTGGCCAAATGGTAGCCCTCTGGTCTATTCTTGGTTaGAGTCGCACCGTTTCCTGGCACCTGAAGATGCTGCTTTGTGGA +
Preference number: 5 (lower is better)
Translates to: KASFGQMVALWSILG*SRTVSWHLKMLLCG
Trigger: TCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAAGGATGCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTCCCACGGCTTCCGACTaGCCATTTTCTCTGGGGACT +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLPTASD*PFSLGT
Trigger: AGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGG...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTGTGGCCTCGTGTAAGTaGGACATGGAGAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLVASCK*DMERAG
Trigger: GCCAGCTCTCTCCATGTCCAACTTACACGAGGCCAC...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTTGGCCACATCCTGCTaGCTGATGAGGACCTCCAGT +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTLATSC*LMRTSS
Trigger: ACTGGAGGTCCTCATCAGCAAGCAGGATGTGGCCAA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 90 bp AGCGAGCTGCCACCTGGGGGTAATTCTCTTTATTGTCTTCATCTCTaGGCCCAGAGCAGTCGTCTTCGTCTTCATGTACAGAGACTGTAT +
Preference number: 5 (lower is better)
Translates to: SELPPGGNSLYCLHL*AQSSRLRLHVQRLY
Trigger: ATACAGTCTCTGTACATGAAGACGAAGACGACTGCTCTGGGCTCAGAGATGAAGACAATAAAGAGAATTACCCCCAGGTGGCAGCTCGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCACCAGACTCGAGGGCTaGGAGCTTCAGCAAGGAATT +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTTRLEG*ELQQGI
Trigger: AATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGGT...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCCTTCCTCTTGAGGCTTaGGATGTGCTTGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTLPLEA*DVLGEL
Trigger: CAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAG...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTCTTCCTCTTGAGGCTTaGGATGTGCTTGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSLPLEA*DVLGEL
Trigger: CAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAG...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTAGTTCTTTGAGCTGTTaGCGCCCCTTGGCCAAATCG +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSSSLSC*RPLAKS
Trigger: CGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACT...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTTTCGGGACTTGAAGTaGCCCATACTGGTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSFRDLK*PILVLS
Trigger: GCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGTTGAACCTCTGACTTaGGCTAAAGATGGAGCACCG +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTVEPLT*AKDGAP
Trigger: CGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAAC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTCAGAACTTCGGGATTaGAAGTCTTGTCCCCATGCG +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSSELRD*KSCPHA
Trigger: CGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTAGTTCTTTGAGCTGTTaGCGCCCCTTGGCCAAATCG +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLSSLSC*RPLAKS
Trigger: CGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACT...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTGTCGGCAAGATTTGCTaGATACCTCTGCATCGGTCA +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSVGKIC*IPLHRS
Trigger: TGACCGATGCAGAGGTATCAAGCAAATCTTGCCGAC...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAACCCTCTGGTCTATTCTaGGTTGAAGTCGCACCGTTT +
Preference number: 5 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEPSGLF*VEVAPF
Trigger: AAACGGTGCGACTTCAACCAAGAATAGACCAGAGGG...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGTTGAACCTCTGACTTaGGCTAAAGATGGAGCACCG +
Preference number: 5 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEVEPLT*AKDGAP
Trigger: CGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAAC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTTCCTCTTGAGGCTTaGGATGTGCTTGGTGAGCTG +
Preference number: 5 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCLPLEA*DVLGEL
Trigger: CAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAG...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTTGCGAATCTTCCTCTaGAGGCTTTGGATGTGCTTG +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSLRIFL*RLWMCL
Trigger: CAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTTCAGCTTTAGTTCTTaGAGCTGTTTGCGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSFSFSS*SCLRPL
Trigger: CAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTTCAGCTTTAGTTCTTaGAGCTGTTTGCGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTFSFSS*SCLRPL
Trigger: CAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTGTCGGCAAGATTTGCTaGATACCTCTGCATCGGTCA +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLVGKIC*IPLHRS
Trigger: TGACCGATGCAGAGGTATCAAGCAAATCTTGCCGAC...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTTTCGGGACTTGAAGTaGCCCATACTGGTTCTCAGC +
Preference number: 5 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCFRDLK*PILVLS
Trigger: GCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTTGCGAATCTTCCTCTaGAGGCTTTGGATGTGCTTG +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLLRIFL*RLWMCL
Trigger: CAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACACCCACGGCTTCCGACTaGCCATTTTCTCTGGGGACT +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTPTASD*PFSLGT
Trigger: AGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGG...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTACAGGACAAGGTAGTTATGAGGTTCTTGTCTaGCTTAGTTCCCTTCCCATC +
Preference number: 5 (lower is better)
Translates to: QSSYFRVLNAYRLTGQGSYEVLV*LSSLPI
Trigger: GATGGGAAGGGAACTAAGCAAGACAAGAACCTCATA...ACTACCTTGTCCTGTAAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCGGCTTTATGAGGTTCTaGTCTTGCTTAGTTCCCTTC +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTGFMRF*SCLVPF
Trigger: GAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCC...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TACCTTCCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTTTGCGAATCTTCCTCTaGAGGCTTTGGATGTGCTTG +
Preference number: 5 (lower is better)
Translates to: YLPSSCFPPWVKSRNFLCLRIFL*RLWMCL
Trigger: CAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAA...ACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGGAAGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAATATGAGGTTCTTGTCTaGCTTAGTTCCCTTCCCATC +
Preference number: 5 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEYEVLV*LSSLPI
Trigger: GATGGGAAGGGAACTAAGCAAGACAAGAACCTCATA...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTTGGTGATTTCCAAGCTTTTCACCCTGTGCAGAATGAATGCAGCTCACAAGAAGGCTTTATGAGGTTCTaGTCTTGCTTAGTTCCCTTC +
Preference number: 5 (lower is better)
Translates to: LGDFQAFHPVQNECSSQEGFMRF*SCLVPF
Trigger: GAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCC...TTCTTGTGAGCTGCATTCATTCTGCACAGGGTGAAAAGCTTGGAAATCACCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGTGGCCTCGTGTAAGTaGGACATGGAGAGAGCTGGC +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVVASCK*DMERAG
Trigger: GCCAGCTCTCTCCATGTCCAACTTACACGAGGCCAC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAACCAGACTCGAGGGCTaGGAGCTTCAGCAAGGAATT +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTTRLEG*ELQQGI
Trigger: AATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGGT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGTTGGCCACATCCTGCTaGCTGATGAGGACCTCCAGT +
Preference number: 5 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQLATSC*LMRTSS
Trigger: ACTGGAGGTCCTCATCAGCAAGCAGGATGTGGCCAA...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATTGGGCTTTCGGGACTaGAAGTTGCCCATACTGGTT +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTLGFRD*KLPILV
Trigger: AACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGACCAGACTCGAGGGCTaGGAGCTTCAGCAAGGAATT +
Preference number: 5 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQTRLEG*ELQQGI
Trigger: AATTCCTTGCTGAAGCTCCAAGCCCTCGAGTCTGGT...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATCAGAACTTCGGGATTaGAAGTCTTGTCCCCATGCG +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSELRD*KSCPHA
Trigger: CGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CCTTCTAGCTGTTTTCCTCCCTGGGTGAAGAGCAGAAATTTTCTTTGTCTCACCTTGGCTTTTATGTGCTaGTATTCACAGTACTCATCT +
Preference number: 5 (lower is better)
Translates to: PSSCFPPWVKSRNFLCLTLAFMC*YSQYSS
Trigger: AGATGAGTACTGTGAATACAAGCACATAAAAGCCAA...GGTGAGACAAAGAAAATTTCTGCTCTTCACCCAGGGAGGAAAACAGCTAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATTGGGCTTTCGGGACTaGAAGTTGCCCATACTGGTT +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVLGFRD*KLPILV
Trigger: AACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGTTGAACCTCTGACTTaGGCTAAAGATGGAGCACCG +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVVEPLT*AKDGAP
Trigger: CGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAAC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTAATTTTTCTTCAAACTaGCGAATCTTCCTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLNFSSN*RIFLLR
Trigger: CCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATT...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATCAGAACTTCGGGATTaGAAGTCTTGTCCCCATGCG +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVSELRD*KSCPHA
Trigger: CGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAGTCGGCAAGATTTGCTaGATACCTCTGCATCGGTCA +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVVGKIC*IPLHRS
Trigger: TGACCGATGCAGAGGTATCAAGCAAATCTTGCCGAC...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp AGATTAGCAGTGACACAGTCGAGTTATTTTAGAGTGCTGAACGCCTACAGGCTTTTGGCTTTTATGTGCTaGTATTCACAGTACTCATCT +
Preference number: 5 (lower is better)
Translates to: RLAVTQSSYFRVLNAYRLLAFMC*YSQYSS
Trigger: AGATGAGTACTGTGAATACAAGCACATAAAAGCCAA...AAGCCTGTAGGCGTTCAGCACTCTAAAATAACTCGACTGTGTCACTGCTAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTATTCAGCTTTAGTTCTTaGAGCTGTTTGCGCCCCTTG +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVFSFSS*SCLRPL
Trigger: CAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAA...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAGGCTTTATGAGGTTCTaGTCTTGCTTAGTTCCCTTC +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTGFMRF*SCLVPF
Trigger: GAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCC...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGTATGAGGTTCTTGTCTaGCTTAGTTCCCTTCCCATC +
Preference number: 5 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQYEVLV*LSSLPI
Trigger: GATGGGAAGGGAACTAAGCAAGACAAGAACCTCATA...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACATCCAGTAGTCTCAGCTaGGCTTTTATGTGCTTGTAT +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTSSSLS*AFMCLY
Trigger: ATACAAGCACATAAAAGCCAAGCTGAGACTACTGGA...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp CTGTGCAGAATGAATGCAGCTCACAAGAAAGTTATTTCACTTTATAAAGTACAGTCCAGTAGTCTCAGCTaGGCTTTTATGTGCTTGTAT +
Preference number: 5 (lower is better)
Translates to: LCRMNAAHKKVISLYKVQSSSLS*AFMCLY
Trigger: ATACAAGCACATAAAAGCCAAGCTGAGACTACTGGA...CTGTACTTTATAAAGTGAAATAACTTTCTTGTGAGCTGCATTCATTCTGCACAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp TTTATGAAGGCCATTACTCTGATTCATAAACAGCAGGTGAATACAGAGAGAACAAATTTTTCTTCAAACTaGCGAATCTTCCTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: FMKAITLIHKQQVNTERTNFSSN*RIFLLR
Trigger: CCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATT...TGTTCTCTCTGTATTCACCTGCTGTTTATGAATCAGAGTAATGGCCTTCATAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS-3UTR CAA 90 bp ACAGCTAATACTATCTCTAAAGTGCTTCCGTTTTCAGTACATCAAAACTACGTAAATTTTTCTTCAAACTaGCGAATCTTCCTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: TANTISKVLPFSVHQNYVNFSSN*RIFLLR
Trigger: CCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAAATT...TACGTAGTTTTGATGTACTGAAAACGGAAGCACTTTAGAGATAGTATTAGCTGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp GGATCTGCAGGATCTGCGCTGTCGGCAGGCGCACTCTaGGTGGAAGCTGGGGCCGGGTCCTTAACTCCGTGC +
Preference number: 6 (lower is better)
Translates to: GSAGSALSAGAL*VEAGAGSLTPC
Trigger: GCACGGAGTTAAGGACCCGGCCCCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp GGTACCGTCGGCGTCACCCGGTGCATCCTTATGAGCTaGCATGGGATCTGCAGGATCTGCGCTGTCGGCAGG +
Preference number: 6 (lower is better)
Translates to: GTVGVTRCILMS*HGICRICAVGR
Trigger: CCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCACCGGGTGACGCCGACGGTACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp AGGGGTCTGTTCTCTCTTCTCCGGCACCACAGCATCTaGAGTCTCCTCGCCAGAGGAGCCTGGTTCGGGGCC +
Preference number: 6 (lower is better)
Translates to: RGLFSLLRHHSI*SLLARGAWFGA
Trigger: GGCCCCGAACCAGGCTCCTCTGGCGAGGAGACTTCAGATGCTGTGGTGCCGGAGAAGAGAGAACAGACCCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp GTGGAAGCTGGGGCCGGGTCCTTAACTCCGTGCACCTaGCCATCTTCTTCCTGGGTCGTCAGAAACGCGGAG +
Preference number: 6 (lower is better)
Translates to: VEAGAGSLTPCT*PSSSWVVRNAE
Trigger: CTCCGCGTTTCTGACGACCCAGGAAGAAGATGGCCAGGTGCACGGAGTTAAGGACCCGGCCCCAGCTTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp CCCCACTGCCACATCGGGAAGAGCTTCGTGGCATCATaGACTGCTGGCTGCTGGGTGGAGATGGAGCGGACT +
Preference number: 6 (lower is better)
Translates to: PHCHIGKSFVAS*TAGCWVEMERT
Trigger: AGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp GCTCTGCCCTGGCACTCTGACTGGCTGGGTACCACATaGTCTGTCTCCTGGCTTTCTCCGTGGTTCCGACCA +
Preference number: 6 (lower is better)
Translates to: ALPWHSDWLGTT*SVSWLSPWFRP
Trigger: TGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGGCAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp TGCATCCTTATGAGCTGGCATGGGATCTGCAGGATCTaGGCTGTCGGCAGGCGCACTCTGCGTGGAAGCTGG +
Preference number: 6 (lower is better)
Translates to: CILMSWHGICRI*AVGRRTLRGSW
Trigger: CCAGCTTCCACGCAGAGTGCGCCTGCCGACAGCGCAGATCCTGCAGATCCCATGCCAGCTCATAAGGATGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp CCACATCGGGAAGAGCTTCGTGGCATCATGAACTGCTaGCTGCTGGGTGGAGATGGAGCGGACTCAGGGTCC +
Preference number: 6 (lower is better)
Translates to: PHREELRGIMNC*LLGGDGADSGS
Trigger: GGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp CTTGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGTaGCATCATGAACTGCTGGCTGCTGGGTGGAGATGG +
Preference number: 6 (lower is better)
Translates to: LAVPTATSGRAS*HHELLAAGWRW
Trigger: CCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp GCCCACGGCTTCCGACTTGCCATTTTCTCTGGGGACTaGAGGCTGTTCACAGGACAGGTTTCTCCGAGGGCC +
Preference number: 6 (lower is better)
Translates to: AHGFRLAIFSGD*RLFTGQVSPRA
Trigger: GGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp GGAGGCTGTTCACAGGACAGGTTTCTCCGAGGGCCCTaGGGCGTACTCCCTTGCTCTTCCGACAGCTTCAGC +
Preference number: 6 (lower is better)
Translates to: GGCSQDRFLRGP*GVLPCSSDSFS
Trigger: GCTGAAGCTGTCGGAAGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp CACTCTGACTGGCTGGGTACCACATGCTCTGTCTCCTaGCTTTCTCCGTGGTTCCGACCACTCTCGGCTCTG +
Preference number: 6 (lower is better)
Translates to: HSDWLGTTCSVS*LSPWFRPLSAL
Trigger: CAGAGCCGAGAGTGGTCGGAACCACGGAGAAAGCCAGGAGACAGAGCATGTGGTACCCAGCCAGTCAGAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp GTTCGGGGCCCACGGCTTCCGACTTGCCATTTTCTCTaGGGACTGGAGGCTGTTCACAGGACAGGTTTCTCC +
Preference number: 6 (lower is better)
Translates to: VRGPRLPTCHFL*GLEAVHRTGFS
Trigger: GGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAGAGAAAATGGCAAGTCGGAAGCCGTGGGCCCCGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp AGGCTTTGGATGTGCTTGGTGAGCTGTGTAATGGTCTGCGGCTCCTaGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGTGGCATCATG +
Preference number: 6 (lower is better)
Translates to: RLWMCLVSCVMVCGS*PSPLPHREELRGIM
Trigger: CATGATGCCACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp CTGGGGACTGGAGGCTGTTCACAGGACAGGTTTCTCCGAGGGCCCTaGGGCGTACTCCCTTGCTCTTCCGACAGCTTCAGCTTTAGTTCT +
Preference number: 6 (lower is better)
Translates to: LGTGGCSQDRFLRGP*GVLPCSSDSFSFSS
Trigger: AGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAACCTGTCCTGTGAACAGCCTCCAGTCCCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp TCCTGGCACCTGAAGATGCTGCTTTGTGGACTCTCATaGGCCGGTGTTCCTGCTCTGCCCTGGCACTCTGAC +
Preference number: 6 (lower is better)
Translates to: SWHLKMLLCGLS*AGVPALPWHSD
Trigger: GTCAGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp TGCTTTGTGGACTCTCATGAGCCGGTGTTCCTGCTCTaGCCTGGCACTCTGACTGGCTGGGTACCACATGCT +
Preference number: 6 (lower is better)
Translates to: CFVDSHEPVFLL*PGTLTGWVPHA
Trigger: AGCATGTGGTACCCAGCCAGTCAGAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp AGGCTTTGGATGTGCTTGGTGAGCTGTGTAATGGTCTaGGGCTCCTTGCCGTCCCCACTGCCACATCGGGAA +
Preference number: 6 (lower is better)
Translates to: RLWMCLVSCVMV*GSLPSPLPHRE
Trigger: TTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp GGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTTaGACATGGAGAGAGCTGGCTGCTTCCCTTCTTTCT +
Preference number: 6 (lower is better)
Translates to: GRGGRAWWPRVS*TWRELAASLLS
Trigger: AGAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp CGTAGCCTCTTCTTGTCAGCCCTAGTTTCTCGGAGATaGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAG +
Preference number: 6 (lower is better)
Translates to: RSLFLSALVSRR*SRRTGMVASCK
Trigger: CTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAGAAACTAGGGCTGACAAGAAGAGGCTACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp ATGTGCTTGGTGAGCTGTGTAATGGTCTGCGGCTCCTaGCCGTCCCCACTGCCACATCGGGAAGAGCTTCGT +
Preference number: 6 (lower is better)
Translates to: MCLVSCVMVCGS*PSPLPHREELR
Trigger: ACGAAGCTCTTCCCGATGTGGCAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp TGGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTaGGACATGGAGAGAGCTGGCTGCTTCCCTTCTTTC +
Preference number: 6 (lower is better)
Translates to: WSRRTGMVASCK*DMERAGCFPSF
Trigger: GAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp TCTTGGTTGAAGTCGCACCGTTTCCTGGCACCTGAAGATGCTGCTTaGTGGACTCTCATGAGCCGGTGTTCCTGCTCTGCCCTGGCACTC +
Preference number: 6 (lower is better)
Translates to: SWLKSHRFLAPEDAA*WTLMSRCSCSALAL
Trigger: GAGTGCCAGGGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp AGAGCTTCGTGGCATCATGAACTGCTGGCTGCTGGGTaGAGATGGAGCGGACTCAGGGTCCAAGTTGAACCT +
Preference number: 6 (lower is better)
Translates to: RASWHHELLAAG*RWSGLRVQVEP
Trigger: AGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCCACCCAGCAGCCAGCAGTTCATGATGCCACGAAGCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp AAGTCGCACCGTTTCCTGGCACCTGAAGATGCTGCTTaGTGGACTCTCATGAGCCGGTGTTCCTGCTCTGCC +
Preference number: 6 (lower is better)
Translates to: KSHRFLAPEDAA*WTLMSRCSCSA
Trigger: GGCAGAGCAGGAACACCGGCTCATGAGAGTCCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp CCACTCTCGGCTCTGAGGATGGATTTGGGCTTTCGGGACTTGAAGTaGCCCATACTGGTTCTCAGCACTCCATCCACAGGCAGGGTCTGT +
Preference number: 6 (lower is better)
Translates to: PLSALRMDLGFRDLK*PILVLSTPSTGRVC
Trigger: ACAGACCCTGCCTGTGGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS CAA 90 bp TTCCGACCACTCTCGGCTCTGAGGATGGATTTGGGCTTTCGGGACTaGAAGTTGCCCATACTGGTTCTCAGCACTCCATCCACAGGCAGG +
Preference number: 6 (lower is better)
Translates to: FRPLSALRMDLGFRD*KLPILVLSTPSTGR
Trigger: CCTGCCTGTGGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGTCGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS TCA 72 bp AGCACCGTGGTGACAGCAACGGATTGTCACCATCGGTaGTGTGATAGAGTAGCCTGCTGGTCCCTGCAGACT +
Preference number: 6 (lower is better)
Translates to: STVVTATDCHHR*CDRVACWSLQT
Trigger: AGTCTGCAGGGACCAGCAGGCTACTCTATCACATCACCGATGGTGACAATCCGTTGCTGTCACCACGGTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp GGAGATGGAGCGGACTCAGGGTCCAAGTTGAACCTCTaGCTTTGGCTAAAGATGGAGCACCGTGGTGACAGC +
Preference number: 6 (lower is better)
Translates to: GDGADSGSKLNL*LWLKMEHRGDS
Trigger: GCTGTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTCAACTTGGACCCTGAGTCCGCTCCATCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS GCA 72 bp GACAGGTTTCTCCGAGGGCCCTTGGGCGTACTCCCTTaGTCTTCCGACAGCTTCAGCTTTAGTTCTTTGAGC +
Preference number: 6 (lower is better)
Translates to: DRFLRGPLGVLP*SSDSFSFSSLS
Trigger: GCTCAAAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAGTACGCCCAAGGGCCCTCGGAGAAACCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp AGGTTCTTGTCTTGCTTAGTTCCCTTCCCATCGTCCTaGGGAGGGGTCTGTTCTCTCTTCTCCGGCACCACA +
Preference number: 6 (lower is better)
Translates to: RFLSCLVPFPSS*GGVCSLFSGTT
Trigger: TGTGGTGCCGGAGAAGAGAGAACAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp CCGTGGTTCCGACCACTCTCGGCTCTGAGGATGGATTaGGGCTTTCGGGACTTGAAGTTGCCCATACTGGTT +
Preference number: 6 (lower is better)
Translates to: PWFRPLSALRMD*GFRDLKLPILV
Trigger: AACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGTCGGAACCACGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS CAA 90 bp TGGCTTTCTCCGTGGTTCCGACCACTCTCGGCTCTGAGGATGGATTaGGGCTTTCGGGACTTGAAGTTGCCCATACTGGTTCTCAGCACT +
Preference number: 6 (lower is better)
Translates to: WLSPWFRPLSALRMD*GFRDLKLPILVLST
Trigger: AGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAGTGGTCGGAACCACGGAGAAAGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS CAA 90 bp TCTCGGAGATGGTCGAGGAGGACGGGCATGGTGGCCTCGTGTAAGTaGGACATGGAGAGAGCTGGCTGCTTCCCTTCTTTCTTTTCATCT +
Preference number: 6 (lower is better)
Translates to: SRRWSRRTGMVASCK*DMERAGCFPSFFSS
Trigger: AGATGAAAAGAAAGAAGGGAAGCAGCCAGCTCTCTCCATGTCCAACTTACACGAGGCCACCATGCCCGTCCTCCTCGACCATCTCCGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp GCTCTGAGGATGGATTTGGGCTTTCGGGACTTGAAGTaGCCCATACTGGTTCTCAGCACTCCATCCACAGGC +
Preference number: 6 (lower is better)
Translates to: ALRMDLGFRDLK*PILVLSTPSTG
Trigger: GCCTGTGGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS CAA 72 bp CTCTCGGCTCTGAGGATGGATTTGGGCTTTCGGGACTaGAAGTTGCCCATACTGGTTCTCAGCACTCCATCC +
Preference number: 6 (lower is better)
Translates to: LSALRMDLGFRD*KLPILVLSTPS
Trigger: GGATGGAGTGCTGAGAACCAGTATGGGCAACTTCAAGTCCCGAAAGCCCAAATCCATCCTCAGAGCCGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000173042.9
CDS CAA 72 bp AACTTGCGAATCTTCCTCTTGAGGCTTTGGATGTGCTaGGTGAGCTGTGTAATGGTCTGCGGCTCCTTGCCG +
Preference number: 6 (lower is better)
Translates to: NLRIFLLRLWMC*VSCVMVCGSLP
Trigger: CGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp TTTTCTTCAAACTTGCGAATCTTCCTCTTGAGGCTTTGGATGTGCTaGGTGAGCTGTGTAATGGTCTGCGGCTCCTTGCCGTCCCCACTG +
Preference number: 6 (lower is better)
Translates to: FSSNLRIFLLRLWMC*VSCVMVCGSLPSPL
Trigger: CAGTGGGGACGGCAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp TTTGGCCAAATGGTAGCCCTCTGGTCTATTCTTGGTTaGAGTCGCACCGTTTCCTGGCACCTGAAGATGCTG +
Preference number: 6 (lower is better)
Translates to: FGQMVALWSILG*SRTVSWHLKML
Trigger: CAGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp TCCCTTGCTCTTCCGACAGCTTCAGCTTTAGTTCTTTaGGCTGTTTGCGCCCCTTGGCCAAATCGTTCATCC +
Preference number: 6 (lower is better)
Translates to: SLALPTASALVL*AVCAPWPNRSS
Trigger: GGATGAACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp CTTTGGCCAAATGGTAGCCCTCTGGTCTATTCTTGGTaGAAGTCGCACCGTTTCCTGGCACCTGAAGATGCT +
Preference number: 6 (lower is better)
Translates to: LWPNGSPLVYSW*KSHRFLAPEDA
Trigger: AGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp CTCCCTTGCTCTTCCGACAGCTTCAGCTTTAGTTCTTaGAGCTGTTTGCGCCCCTTGGCCAAATCGTTCATC +
Preference number: 6 (lower is better)
Translates to: LPCSSDSFSFSS*SCLRPLAKSFI
Trigger: GATGAACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAAGCTGTCGGAAGAGCAAGGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp GCATCGGTCATAAAGAGGCTTTATGAGGTTCTTGTCTaGCTTAGTTCCCTTCCCATCGTCCTGGGGAGGGGT +
Preference number: 6 (lower is better)
Translates to: ASVIKRLYEVLV*LSSLPIVLGRG
Trigger: ACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCCTCTTTATGACCGATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp AAAAGCATCCTTTGGCCAAATGGTAGCCCTCTGGTCTATTCTTGGTaGAAGTCGCACCGTTTCCTGGCACCTGAAGATGCTGCTTTGTGG +
Preference number: 6 (lower is better)
Translates to: KSILWPNGSPLVYSW*KSHRFLAPEDAALW
Trigger: CCACAAAGCAGCATCTTCAGGTGCCAGGAAACGGTGCGACTTCAACCAAGAATAGACCAGAGGGCTACCATTTGGCCAAAGGATGCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp GATACCTCTGCATCGGTCATAAAGAGGCTTTATGAGGTTCTTGTCTaGCTTAGTTCCCTTCCCATCGTCCTGGGGAGGGGTCTGTTCTCT +
Preference number: 6 (lower is better)
Translates to: DTSASVIKRLYEVLV*LSSLPIVLGRGLFS
Trigger: AGAGAACAGACCCCTCCCCAGGACGATGGGAAGGGAACTAAGCAAGACAAGAACCTCATAAAGCCTCTTTATGACCGATGCAGAGGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp GAACCTCTGACTTTGGCTAAAGATGGAGCACCGTGGTaGCAGCAACGGATTGTCACCATCGGTGATGTGATA +
Preference number: 6 (lower is better)
Translates to: EPLTLAKDGAPW*QQRIVTIGDVI
Trigger: TATCACATCACCGATGGTGACAATCCGTTGCTGTCACCACGGTGCTCCATCTTTAGCCAAAGTCAGAGGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp CCCTGTGGACAGTCTTCATCAGAGTCCTCTTCCTCCTaGATTGTTGGGATAAGGGATGGTGTCGGCAAGATT +
Preference number: 6 (lower is better)
Translates to: PCGQSSSESSSS*IVGIRDGVGKI
Trigger: AATCTTGCCGACACCATCCCTTATCCCAACAATTCAGGAGGAAGAGGACTCTGATGAAGACTGTCCACAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS GCA 72 bp TCAAACTTGCGAATCTTCCTCTTGAGGCTTTGGATGTaGTTGGTGAGCTGTGTAATGGTCTGCGGCTCCTTG +
Preference number: 6 (lower is better)
Translates to: SNLRIFLLRLWM*LVSCVMVCGSL
Trigger: CAAGGAGCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTTTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp GGCCAAATCGTTCATCCATTTCAGAACTTCGGGATTTaGAGTCTTGTCCCCATGCGACGGGCGGTATTTCTT +
Preference number: 6 (lower is better)
Translates to: GQIVHPFQNFGI*SLVPMRRAVFL
Trigger: AAGAAATACCGCCCGTCGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGAAATGGATGAACGATTTGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp AGAGTCCTCTTCCTCCTGAATTGTTGGGATAAGGGATaGTGTCGGCAAGATTTGCTTGATACCTCTGCATCG +
Preference number: 6 (lower is better)
Translates to: RVLFLLNCWDKG*CRQDLLDTSAS
Trigger: CGATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTCAGGAGGAAGAGGACTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS CAA 72 bp TGGCCAAATCGTTCATCCATTTCAGAACTTCGGGATTaGAAGTCTTGTCCCCATGCGACGGGCGGTATTTCT +
Preference number: 6 (lower is better)
Translates to: WPNRSSISELRD*KSCPHATGGIS
Trigger: AGAAATACCGCCCGTCGCATGGGGACAAGACTTCAAATCCCGAAGTTCTGAAATGGATGAACGATTTGGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS TCA 72 bp TGGAGCTTCAGCAAGGAATTCTCATGTAAGTCCTGCTaGGTTCCAAAAGCATCCTTTGGCCAAATGGTAGCC +
Preference number: 6 (lower is better)
Translates to: WSFSKEFSCKSC*VPKASFGQMVA
Trigger: GGCTACCATTTGGCCAAAGGATGCTTTTGGAACTCAGCAGGACTTACATGAGAATTCCTTGCTGAAGCTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CCA 72 bp TTTTCTTCAAACTTGCGAATCTTCCTCTTGAGGCTTTaGATGTGCTTGGTGAGCTGTGTAATGGTCTGCGGC +
Preference number: 6 (lower is better)
Translates to: FSSNLRIFLLRL*MCLVSCVMVCG
Trigger: GCCGCAGACCATTACACAGCTCACCAAGCACATCCAAAGCCTCAAGAGGAAGATTCGCAAGTTTGAAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 72 bp AGCTTCAGCTTTAGTTCTTTGAGCTGTTTGCGCCCCTaGGCCAAATCGTTCATCCATTTCAGAACTTCGGGA +
Preference number: 6 (lower is better)
Translates to: SFSFSSLSCLRP*AKSFIHFRTSG
Trigger: TCCCGAAGTTCTGAAATGGATGAACGATTTGGCCAAGGGGCGCAAACAGCTCAAAGAACTAAAGCTGAAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
ENSMUST00000173042.9
CDS CAA 90 bp CTCTTCCTCCTGAATTGTTGGGATAAGGGATGGTGTCGGCAAGATTaGCTTGATACCTCTGCATCGGTCATAAAGAGGCTTTATGAGGTT +
Preference number: 6 (lower is better)
Translates to: LFLLNCWDKGWCRQD*LDTSASVIKRLYEV
Trigger: AACCTCATAAAGCCTCTTTATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTCAGGAGGAAGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS CAA 90 bp GTCCTCTTCCTCAATTGTTGGGATAAGGGATGGTGTCGGCAAGATTaGCTTGATACCTCTGCATCGGTCATAAAGAGGCTTTATGAGGTT +
Preference number: 6 (lower is better)
Translates to: VLFLNCWDKGWCRQD*LDTSASVIKRLYEV
Trigger: AACCTCATAAAGCCTCTTTATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTGAGGAAGAGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173042.9
CDS CAA 72 bp CTGAATTGTTGGGATAAGGGATGGTGTCGGCAAGATTaGCTTGATACCTCTGCATCGGTCATAAAGAGGCTT +
Preference number: 6 (lower is better)
Translates to: LNCWDKGWCRQD*LDTSASVIKRL
Trigger: AAGCCTCTTTATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062883.7
ENSMUST00000105436.9
CDS CAA 72 bp CTCAATTGTTGGGATAAGGGATGGTGTCGGCAAGATTaGCTTGATACCTCTGCATCGGTCATAAAGAGGCTT +
Preference number: 6 (lower is better)
Translates to: LNCWDKGWCRQD*LDTSASVIKRL
Trigger: AAGCCTCTTTATGACCGATGCAGAGGTATCAAGCAAATCTTGCCGACACCATCCCTTATCCCAACAATTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173042.9