RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM131C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006218

Ensembl transcript IDs: ENSMUST00000006380.5

Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGTCCTGGAGCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCGGTaGACAGGAGTAACAGCCAGCCTCCTCACCACGATCCACCCTGTG +
Preference number: 1 (lower is better)
Translates to: SPGAGCEQVHGGTER*TGVTASLLTTIHPV
Trigger: CACAGGGTGGATCGTGGTGAGGAGGCTGGCTGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTGCTCACAGCCTGCTCCAGGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR GCA 90 bp TCCTCACCACGATCCACCCTGTGTTTGTACGGAGGAGTCGAGAGATaGCCCGTGGTACAGTGGTACAGCTGGGCTCCCAGCAGGGTGTGC +
Preference number: 1 (lower is better)
Translates to: SSPRSTLCLYGGVER*PVVQWYSWAPSRVC
Trigger: GCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCCTCCGTACAAACACAGGGTGGATCGTGGTGAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR CCA 90 bp TTGTACGGAGGAGTCGAGAGATGCCCCGTGGTACAGTGGTACAGCTaGGCTCCCAGCAGGGTGTGCAGACAACGGACTGGCCATCTTGCC +
Preference number: 1 (lower is better)
Translates to: LYGGVERCPVVQWYS*APSRVCRQRTGHLA
Trigger: GGCAAGATGGCCAGTCCGTTGTCTGCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCCTCCGTACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR CCA 90 bp CACGATCCACCCTGTGTTTGTACGGAGGAGTCGAGAGATGCCCCGTaGTACAGTGGTACAGCTGGGCTCCCAGCAGGGTGTGCAGACAAC +
Preference number: 1 (lower is better)
Translates to: HDPPCVCTEESRDAP*YSGTAGLPAGCADN
Trigger: GTTGTCTGCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCCTCCGTACAAACACAGGGTGGATCGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR-3UTR CCA 90 bp AGAGAGGAAGGACAGACAGACAGTCCAGTGACTAGAGAGAGTCCAGGAGAAACACAGGCTGAGCCCAGGTaGAGGTTGGCTCCCCAGACC +
Preference number: 2 (lower is better)
Translates to: REEGQTDSPVTRESPGETQAEPR*RLAPQT
Trigger: GGTCTGGGGAGCCAACCTCCACCTGGGCTCAGCCTG...TGTTTCTCCTGGACTCTCTCTAGTCACTGGACTGTCTGTCTGTCCTTCCTCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR CCA 72 bp GGAGTCGAGAGATGCCCCGTGGTACAGTGGTACAGCTaGGCTCCCAGCAGGGTGTGCAGACAACGGACTGGC +
Preference number: 3 (lower is better)
Translates to: GVERCPVVQWYS*APSRVCRQRTG
Trigger: GCCAGTCCGTTGTCTGCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR GCA 72 bp GCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCGGTaGACAGGAGTAACAGCCAGCCTCCTCACCACGATC +
Preference number: 3 (lower is better)
Translates to: AGCEQVHGGTER*TGVTASLLTTI
Trigger: GATCGTGGTGAGGAGGCTGGCTGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTGCTCACAGCCTGC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR CCA 72 bp CCCTGTGTTTGTACGGAGGAGTCGAGAGATGCCCCGTaGTACAGTGGTACAGCTGGGCTCCCAGCAGGGTGT +
Preference number: 3 (lower is better)
Translates to: PCVCTEESRDAP*YSGTAGLPAGC
Trigger: ACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCCTCCGTACAAACACAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
3UTR CCA 72 bp TTGTACGGAGGAGTCGAGAGATGCCCCGTGGTACAGTaGTACAGCTGGGCTCCCAGCAGGGTGTGCAGACAA +
Preference number: 3 (lower is better)
Translates to: LYGGVERCPVVQ*YSWAPSRVCRQ
Trigger: TTGTCTGCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCTCGACTCCTCCGTACAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp GGAGCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCGGTGCACAGGAGTAACAAGCCGCTGCCGGTGGTaGTGCTGGGTGGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: GAGCEQVHGGTERCTGVTSRCRW*CWVGLG
Trigger: CCCTAGCCCCACCCAGCAGCACCACCGGCAGCGGCT...TGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTGCTCACAGCCTGCTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp AGAGATGCCCCGTGGTACAGTGGTACAGCTGGGCTCCCAGCAGGGTGTGCAGACGACGGCAGCGAGCCATaGAAGTGGGCCCTGTCATCG +
Preference number: 4 (lower is better)
Translates to: RDAPWYSGTAGLPAGCADDGSEP*KWALSS
Trigger: CGATGACAGGGCCCACTTGCATGGCTCGCTGCCGTC...GTCTGCACACCCTGCTGGGAGCCCAGCTGTACCACTGTACCACGGGGCATCTCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp CAGGTCCATGGAGGCACTGAGCGGTGCACAGGAGTAACAGCCAGCCTCCTCACCAGGAGGTCTGTGCCCTaGGGCCTGGGGCTGTTTTTG +
Preference number: 4 (lower is better)
Translates to: QVHGGTERCTGVTASLLTRRSVP*GLGLFL
Trigger: CAAAAACAGCCCCAGGCCCCAGGGCACAGACCTCCT...GGTGAGGAGGCTGGCTGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR TCA 90 bp GGAGCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCGGTGCACAGGAGTAACAAGGGGGTTCCTCTGGTaGGGGCCAGCCATCATTCAG +
Preference number: 4 (lower is better)
Translates to: GAGCEQVHGGTERCTGVTRGFLW*GPAIIQ
Trigger: CTGAATGATGGCTGGCCCTCACCAGAGGAACCCCCT...TGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTGCTCACAGCCTGCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp GGACAGACAGACAGTCCAGTGACTAGAGAGAGTCCAGGAGAAACAGTCCCACCTCGCTGCCGGTGGTGCTaGTGGGTGGGGCTAGGGGGT +
Preference number: 4 (lower is better)
Translates to: GQTDSPVTRESPGETVPPRCRWC*WVGLGG
Trigger: ACCCCCTAGCCCCACCCAGCAGCACCACCGGCAGCG...AGGTGGGACTGTTTCTCCTGGACTCTCTCTAGTCACTGGACTGTCTGTCTGTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp CCAGTGACTAGAGAGAGTCCAGGAGAAACAGTCCCACCTTCCAGGCAGATGCCCAGCTGGAAGGCACCCTaGGTACTGTCCTCGGGCTGC +
Preference number: 4 (lower is better)
Translates to: PVTRESPGETVPPSRQMPSWKAP*VLSSGC
Trigger: GCAGCCCGAGGACAGTACCCAGGGTGCCTTCCAGCT...GGGCATCTGCCTGGAAGGTGGGACTGTTTCTCCTGGACTCTCTCTAGTCACTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp CCTCCTCACCACGATCCACCCTGTGTTTGTACGGAGGAGTCGAGAGATGCCCCGTCGAGGTCTTGGAGCTaGAAGGCACCCTGGGTACTG +
Preference number: 4 (lower is better)
Translates to: PPHHDPPCVCTEESRDAPSRSWS*KAPWVL
Trigger: CAGTACCCAGGGTGCCTTCCAGCTCCAAGACCTCGA...CGGGGCATCTCTCGACTCCTCCGTACAAACACAGGGTGGATCGTGGTGAGGAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp CACAGGAGTAACAGCCAGCCTCCTCACCACGATCCACCCTGTGTTTGTACGGAGTGGCTGGTGAGTGGCTaGAGGGCAGGTCCCGATTCA +
Preference number: 4 (lower is better)
Translates to: HRSNSQPPHHDPPCVCTEWLVSG*RAGPDS
Trigger: TGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCA...CTCCGTACAAACACAGGGTGGATCGTGGTGAGGAGGCTGGCTGTTACTCCTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR TCA 90 bp AACAGCCAGCCTCCTCACCACGATCCACCCTGTGTTTGTACGGAGGAGTCGAGAAGCCATCATTCAGGGTaGGGCCAGGAGAGCAGGCTA +
Preference number: 4 (lower is better)
Translates to: NSQPPHHDPPCVCTEESRSHHSG*GQESRL
Trigger: TAGCCTGCTCTCCTGGCCTCACCCTGAATGATGGCT...TCTCGACTCCTCCGTACAAACACAGGGTGGATCGTGGTGAGGAGGCTGGCTGTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp GGACAGACAGACAGTCCAGTGACTAGAGAGAGTCCAGGAGAAACAGTCCCACCTGATTCAGGAGGTCTGTaGCCTGGGGCCTGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: GQTDSPVTRESPGETVPPDSGGL*PGAWGC
Trigger: ACAGCCCCAGGCCCCAGGGCACAGACCTCCTGAATC...AGGTGGGACTGTTTCTCCTGGACTCTCTCTAGTCACTGGACTGTCTGTCTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp GGACAGACAGACAGTCCAGTGACTAGAGAGAGTCCAGGAGAAACAGTCCCACCTCATGGTCCGGAACAATaGCTGGTGAGTGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GQTDSPVTRESPGETVPPHGPEQ*LVSGWR
Trigger: CCTCCAGCCACTCACCAGCCATTGTTCCGGACCATG...AGGTGGGACTGTTTCTCCTGGACTCTCTCTAGTCACTGGACTGTCTGTCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR TCA 90 bp TGTCTGCTTAGAGTCCTGGAGCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCTTCATCTTCCTCTTCTaGAAGAGAGCCACTGTCCAC +
Preference number: 4 (lower is better)
Translates to: CLLRVLEQAVSRSMEALSFIFLF*KRATVH
Trigger: GTGGACAGTGGCTCTCTTTCAGAAGAGGAAGATGAA...GCTCAGTGCCTCCATGGACCTGCTCACAGCCTGCTCCAGGACTCTAAGCAGACA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp GGACAGACAGACAGTCCAGTGACTAGAGAGAGTCCAGGAGAAACAGTCCCACCTTGGTCCTTGATGCTCTaGACCACCCCCACAAGGGAT +
Preference number: 4 (lower is better)
Translates to: GQTDSPVTRESPGETVPPWSLML*TTPTRD
Trigger: ATCCCTTGTGGGGGTGGTGCAGAGCATCAAGGACCA...AGGTGGGACTGTTTCTCCTGGACTCTCTCTAGTCACTGGACTGTCTGTCTGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR GCA 90 bp AACAGCCAGCCTCCTCACCACGATCCACCCTGTGTTTGTACGGAGGAGTCGAGACAACAGAAATCCATCTaGTTGTCCTTGCCAGCAACA +
Preference number: 4 (lower is better)
Translates to: NSQPPHHDPPCVCTEESRQQKSI*LSLPAT
Trigger: TGTTGCTGGCAAGGACAAGCAGATGGATTTCTGTTG...TCTCGACTCCTCCGTACAAACACAGGGTGGATCGTGGTGAGGAGGCTGGCTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CCA 90 bp CTGGGATTAACACACTACTTTAATGTCACCAGAGAACCCTGTGGGAGAGGGAGGCTGGGGCTGTTTTTGTaGGCACTTGTGAACAGATCT +
Preference number: 4 (lower is better)
Translates to: LGLTHYFNVTREPCGRGRLGLFL*ALVNRS
Trigger: AGATCTGTTCACAAGTGCCCACAAAAACAGCCCCAG...CCTCCCTCTCCCACAGGGTTCTCTGGTGACATTAAAGTAGTGTGTTAATCCCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 90 bp TCTGAAAGAGAGCCACTGTCCACCGACGGCAGCGAGCCATGCAAGTaGGCCCTGTCATCGAGCCCCTGGGCCCCTGGCAGCCGCTGCCGG +
Preference number: 5 (lower is better)
Translates to: SEREPLSTDGSEPCK*ALSSSPWAPGSRCR
Trigger: CCGGCAGCGGCTGCCAGGGGCCCAGGGGCTCGATGACAGGGCCCACTTGCATGGCTCGCTGCCGTCGGTGGACAGTGGCTCTCTTTCAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 90 bp TGTCCTTGCCAGCAACATGGTCCGGAACAATGGCTGGTGAGTGGCTaGAGGGCAGGTCCCGATTCAGGAGGTCTGTGCCCTGGGGCCTGG +
Preference number: 5 (lower is better)
Translates to: CPCQQHGPEQWLVSG*RAGPDSGGLCPGAW
Trigger: CCAGGCCCCAGGGCACAGACCTCCTGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCATTGTTCCGGACCATGTTGCTGGCAAGGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 90 bp GGTGAGTGGCTGGAGGGCAGGTCCCGATTCAGGAGGTCTGTGCCCTaGGGCCTGGGGCTGTTTTTGTGGGCACTTGTGAACAGATCTCGC +
Preference number: 5 (lower is better)
Translates to: GEWLEGRSRFRRSVP*GLGLFLWALVNRSR
Trigger: GCGAGATCTGTTCACAAGTGCCCACAAAAACAGCCCCAGGCCCCAGGGCACAGACCTCCTGAATCGGGACCTGCCCTCCAGCCACTCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS TCA 90 bp CATCTGCTTGTCCTTGCCAGCAACATGGTCCGGAACAATGGCTGGTaGGTGGCTGGAGGGCAGGTCCCGATTCAGGAGGTCTGTGCCCTG +
Preference number: 5 (lower is better)
Translates to: HLLVLASNMVRNNGW*VAGGQVPIQEVCAL
Trigger: CAGGGCACAGACCTCCTGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCATTGTTCCGGACCATGTTGCTGGCAAGGACAAGCAGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CAA 90 bp GGAGCAGGCTGTGAGCAGGTCCATGGAGGCACTGAGCGGTGCACAGGAGTAACATCCATCTGCTTGTCCTaGCCAGCAACATGGTCCGGA +
Preference number: 5 (lower is better)
Translates to: GAGCEQVHGGTERCTGVTSICLS*PATWSG
Trigger: TCCGGACCATGTTGCTGGCAAGGACAAGCAGATGGA...TGTTACTCCTGTGCACCGCTCAGTGCCTCCATGGACCTGCTCACAGCCTGCTCC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS-3UTR CAA 90 bp GGATTAACACACTACTTTAATGTCACCAGAGAACCCTGTGGGAGAGGGAGGGGGGGCCTGGGGCTGTTTTaGTGGGCACTTGTGAACAGA +
Preference number: 5 (lower is better)
Translates to: GLTHYFNVTREPCGRGRGGLGLF*WALVNR
Trigger: TCTGTTCACAAGTGCCCACAAAAACAGCCCCAGGCC...CCCCCTCCCTCTCCCACAGGGTTCTCTGGTGACATTAAAGTAGTGTGTTAATCC
53% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 72 bp AGCGAGCCATGCAAGTGGGCCCTGTCATCGAGCCCCTaGGCCCCTGGCAGCCGCTGCCGGTGGTGCTGCTGG +
Preference number: 6 (lower is better)
Translates to: SEPCKWALSSSP*APGSRCRWCCW
Trigger: CCAGCAGCACCACCGGCAGCGGCTGCCAGGGGCCCAGGGGCTCGATGACAGGGCCCACTTGCATGGCTCGCT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 72 bp GAGCCACTGTCCACCGACGGCAGCGAGCCATGCAAGTaGGCCCTGTCATCGAGCCCCTGGGCCCCTGGCAGC +
Preference number: 6 (lower is better)
Translates to: EPLSTDGSEPCK*ALSSSPWAPGS
Trigger: GCTGCCAGGGGCCCAGGGGCTCGATGACAGGGCCCACTTGCATGGCTCGCTGCCGTCGGTGGACAGTGGCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS TCA 72 bp GTCCTTGCCAGCAACATGGTCCGGAACAATGGCTGGTaGGTGGCTGGAGGGCAGGTCCCGATTCAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: VLASNMVRNNGW*VAGGQVPIQEV
Trigger: GACCTCCTGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCATTGTTCCGGACCATGTTGCTGGCAAGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 72 bp CAGCAACATGGTCCGGAACAATGGCTGGTGAGTGGCTaGAGGGCAGGTCCCGATTCAGGAGGTCTGTGCCCT +
Preference number: 6 (lower is better)
Translates to: QQHGPEQWLVSG*RAGPDSGGLCP
Trigger: AGGGCACAGACCTCCTGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCATTGTTCCGGACCATGTTGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5
CDS CCA 72 bp TCTGCTTGTCCTTGCCAGCAACATGGTCCGGAACAATaGCTGGTGAGTGGCTGGAGGGCAGGTCCCGATTCA +
Preference number: 6 (lower is better)
Translates to: SACPCQQHGPEQ*LVSGWRAGPDS
Trigger: TGAATCGGGACCTGCCCTCCAGCCACTCACCAGCCATTGTTCCGGACCATGTTGCTGGCAAGGACAAGCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006380.5