RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM131B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029861

Ensembl transcript IDs: ENSMUST00000031891.15, ENSMUST00000095974.4, ENSMUST00000143278.8

Found 296 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTCCCTGCTGTCTTCTGCCCGGGTTTCATCTGTGCTGCTGGAGCTTaGGAGGGTATGGGTTGCAGCCGTGCCCCTCAGGTCAGAGTGGGG +
Preference number: 1 (lower is better)
Translates to: FPAVFCPGFICAAGA*EGMGCSRAPQVRVG
Trigger: CCCCACTCTGACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGGAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp CTCCCAGTTCCCTGCTGTCTTCTGCCCGGGTTTCATCTGTGCTGCTaGAGCTTGGGAGGGTATGGGTTGCAGCCGTGCCCCTCAGGTCAG +
Preference number: 1 (lower is better)
Translates to: LPVPCCLLPGFHLCC*SLGGYGLQPCPSGQ
Trigger: CTGACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGGAACTGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp AAGCTCCCAGTTCCCTGCTGTCTTCTGCCCGGGTTTCATCTGTGCTaGTGGAGCTTGGGAGGGTATGGGTTGCAGCCGTGCCCCTCAGGT +
Preference number: 1 (lower is better)
Translates to: KLPVPCCLLPGFHLC*WSLGGYGLQPCPSG
Trigger: ACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGGAACTGGGAGCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp TGGAAGCTCCCAGTTCCCTGCTGTCTTCTGCCCGGGTTTCATCTGTaGTGCTGGAGCTTGGGAGGGTATGGGTTGCAGCCGTGCCCCTCA +
Preference number: 1 (lower is better)
Translates to: WKLPVPCCLLPGFHL*CWSLGGYGLQPCPS
Trigger: TGAGGGGCACGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGGAACTGGGAGCTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp TCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATaGCAGCAGCCTGGGGAAACCAAGTCCCTGCTCGGGTACAAACCC +
Preference number: 1 (lower is better)
Translates to: SLFRVGWASPASVAV*QQPGETKSLLGYKP
Trigger: GGGTTTGTACCCGAGCAGGGACTTGGTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 90 bp AGGCAGGTATTCTGCTGTTCCTGCCAAGCCATGTCCAACAGCCCCTaGGGCCTGCTTCCCACAGTAGGGATGCACTGGTGCCATGGGCAG +
Preference number: 1 (lower is better)
Translates to: RQVFCCSCQAMSNSP*GLLPTVGMHWCHGQ
Trigger: CTGCCCATGGCACCAGTGCATCCCTACTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACATGGCTTGGCAGGAACAGCAGAATACCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTaGCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACCAAGTCCCT +
Preference number: 1 (lower is better)
Translates to: PAPCIFSLQSGVGLT*LCGSMPAAWGNQVP
Trigger: AGGGACTTGGTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp GGAATGACGGGTTTCTGGAGTGCGAGCCCAGATAAAACCCCCTGCTaGTCCTTCACTTGCCAGGGCGGTAACGGCCTGGTGAGGACTGGA +
Preference number: 1 (lower is better)
Translates to: GMTGFWSASPDKTPC*SFTCQGGNGLVRTG
Trigger: TCCAGTCCTCACCAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGGGCTCGCACTCCAGAAACCCGTCATTCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp GCCATAGCCATGGCTCATCTCCCACCACCCTGCCACCTAATTGTCTaGGTCTCAGTTCCTGGAATGACGGGTTTCTGGAGTGCGAGCCCA +
Preference number: 1 (lower is better)
Translates to: AIAMAHLPPPCHLIV*VSVPGMTGFWSASP
Trigger: TGGGCTCGCACTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATGAGCCATGGCTATGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp GGCATGGACCCAAGAGCCATAGCCATGGCTCATCTCCCACCACCCTaGCACCTAATTGTCTGGGTCTCAGTTCCTGGAATGACGGGTTTC +
Preference number: 1 (lower is better)
Translates to: GMDPRAIAMAHLPPP*HLIVWVSVPGMTGF
Trigger: GAAACCCGTCATTCCAGGAACTGAGACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATGAGCCATGGCTATGGCTCTTGGGTCCATGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 90 bp AGCACAGCCAAGGCTCCTGGAAGACGAAATCGGGGGTGTAAAAACTaGGATTCAGTGTTCAGCGCGACGAACCTGGGCATGGACCCAAGA +
Preference number: 1 (lower is better)
Translates to: STAKAPGRRNRGCKN*DSVFSATNLGMDPR
Trigger: TCTTGGGTCCATGCCCAGGTTCGTCGCGCTGAACACTGAATCTCAGTTTTTACACCCCCGATTTCGTCTTCCAGGAGCCTTGGCTGTGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp TGCCACCTAATTGTCTGGGTCTCAGTTCCTGGAATGACGGGTTTCTaGAGTGCGAGCCCAGATAAAACCCCCTGCTGGTCCTTCACTTGC +
Preference number: 1 (lower is better)
Translates to: CHLIVWVSVPGMTGF*SASPDKTPCWSFTC
Trigger: GCAAGTGAAGGACCAGCAGGGGGTTTTATCTGGGCTCGCACTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAGACAATTAGGTGGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 90 bp TGCACTGGTGCCATGGGCAGAGAGAACAGAACCAGGAAAGCAGAGTaGAATGGAGAAAAGAGGCATTCGGACAGCACAGCCAAGGCTCCT +
Preference number: 1 (lower is better)
Translates to: CTGAMGRENRTRKAE*NGEKRHSDSTAKAP
Trigger: AGGAGCCTTGGCTGTGCTGTCCGAATGCCTCTTTTCTCCATTTCACTCTGCTTTCCTGGTTCTGTTCTCTCTGCCCATGGCACCAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp CTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACCAAGTCCCTaGTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGT +
Preference number: 1 (lower is better)
Translates to: LPLWQYASSLGKPSP*SGTNPTRFLQVFCS
Trigger: ACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGGGACTTGGTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp TGGCTGCTGCAGCACCCTCATAACAATACTGCACTGACTTGCTGTTaGTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGT +
Preference number: 1 (lower is better)
Translates to: WLLQHPHNNTALTCC*SLSPWSTPNQRKGG
Trigger: ACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTGCAGCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 90 bp TGTCTACCTCACTTTTGGCTCCTGATCTCAAAAGCCAAGATTGCCTaGGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAG +
Preference number: 1 (lower is better)
Translates to: CLPHFWLLISKAKIA*AGPTVYAEHRRTLQ
Trigger: CTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTCAGGCAATCTTGGCTTTTGAGATCAGGAGCCAAAAGTGAGGTAGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp GAGATGTGGCTGCTGCAGCACCCTCATAACAATACTGCACTGACTTaGTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAA +
Preference number: 1 (lower is better)
Translates to: EMWLLQHPHNNTALT*CCSLSPWSTPNQRK
Trigger: TTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTGCAGCAGCCACATCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp GGAGAAAAACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTaGTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCAGCACC +
Preference number: 1 (lower is better)
Translates to: GEKHGDKLGHLLSKL*LCQRPDWRCGCCST
Trigger: GGTGCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTTTTTCTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp GCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATaGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAA +
Preference number: 1 (lower is better)
Translates to: APCPHGPHQIKGKEV*TGKLRYHHSHSYKE
Trigger: TTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 90 bp AAACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATaGCAAAGGCCAGATTGGAGATGTGGCTGCTGCAGCACCCTCATA +
Preference number: 1 (lower is better)
Translates to: KHGDKLGHLLSKLCL*QRPDWRCGCCSTLI
Trigger: TATGAGGGTGCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp CCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATaGTCCACACCAAATCAAAGGAAAGGAGGTATGGACAGGCAAGCT +
Preference number: 1 (lower is better)
Translates to: PHNNTALTCCCSLSP*STPNQRKGGMDRQA
Trigger: AGCTTGCCTGTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp TTATTCTTTGTCTCATTGGTGACCCTCTTGTCTCTGAGTAGGCCTTaGGACAAAGAATCATACCATGACCCCTGTCAACCCCAGCTCCAT +
Preference number: 1 (lower is better)
Translates to: LFFVSLVTLLSLSRP*DKESYHDPCQPQLH
Trigger: ATGGAGCTGGGGTTGACAGGGGTCATGGTATGATTCTTTGTCCCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGAGACAAAGAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp TCTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTaGCTGCTGCAGCACCCTCATAACAATACTGCACTGACTTGCTGT +
Preference number: 1 (lower is better)
Translates to: SPIKTLLMPKARLEM*LLQHPHNNTALTCC
Trigger: ACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 90 bp GTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAATaGGGACCATTTGGCTTCCTTGAGGAATGGAAGGAGGAAAGAAAG +
Preference number: 1 (lower is better)
Translates to: VQTLLGFFRSFVVFQ*GPFGFLEEWKEERK
Trigger: CTTTCTTTCCTCCTTCCATTCCTCAAGGAAGCCAAATGGTCCCCATTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGCACTGACTTGCTGTTaGTCCCTGTCCCCATGGTCC +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNALTCC*SLSPWS
Trigger: GGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGTAGGGATGCACTGGTaGCATGGGCAGAGAGAACAG +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNVGMHW*HGQREQ
Trigger: CTGTTCTCTCTGCCCATGGCACCAGTGCATCCCTAC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGATAAAACCCCCTGCTaGTCCTTCACTTGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNDKTPC*SFTCQG
Trigger: GCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGGGCTGGGTGCCAGATaGAAGAAGGCAGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNGLGAR*KKAERE
Trigger: TTCTCTTTCTGCCTTCTTTCATCTGGCACCCAGCCC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTTGGGACTGGAGCCATaGATAGACAGGAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNLGLEP*IDRRKE
Trigger: CTCCTTCCTCCTGTCTATTCATGGCTCCAGTCCCAA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTGCTTCCCCCTCCCCTaGAGGATGAGGGTCACCTAC +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCCFPLP*RMRVTY
Trigger: GTAGGTGACCCTCATCCTTCAGGGGAGGGGGAAGCA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTCGGCCTGGTGAGGACTaGAAGCTCCCAGTTCCCTGC +
Preference number: 2 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLRPGED*KLPVPC
Trigger: GCAGGGAACTGGGAGCTTCCAGTCCTCACCAGGCCG...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACCTGGGTCTCAGTTCCTaGAATGACGGGTTTCTGGAG +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNLGLSS*NDGFLE
Trigger: CTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAG...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGTATTCTGCTGTTCCTaGCAAGCCATGTCCAACAGC +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNVFCCS*QAMSNS
Trigger: GCTGTTGGACATGGCTTGGCAGGAACAGCAGAATAC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAGTCCAGCCAAGGCAGTaGCAGCACCAGACTCCCCAC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPVQPRQ*QHQTPH
Trigger: GTGGGGAGTCTGGTGCTGTCACTGCCTTGGCTGGAC...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATGGGAGGGTATGGGTTaGAGCCGTGCCCCTCAGGTC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPWEGMG*SRAPQV
Trigger: GACCTGAGGGGCACGGCTGCAACCCATACCCTCCCA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACCACGGATGGGGACACTaGATCCTAGGTCAACAATTT +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNHGWGH*ILGQQF
Trigger: AAATTGTTGACCTAGGATGCAGTGTCCCCATCCGTG...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTGGAGATGTGGCTGCTaGAGCACCCTCATAACAATA +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNWRCGC*STLITI
Trigger: TATTGTTATGAGGGTGCTGCAGCAGCCACATCTCCA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCACGGCCTGGTGAGGACTaGAAGCTCCCAGTTCCCTGC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPRPGED*KLPVPC
Trigger: GCAGGGAACTGGGAGCTTCCAGTCCTCACCAGGCCG...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTAGTATGCCAGCAGCCTaGGGAAACCAAGTCCCTGCT +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSMPAA*GNQVPA
Trigger: AGCAGGGACTTGGTTTCCCCAGGCTGCTGGCATACT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTTGGGACTGGAGCCATaGATAGACAGGAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCLGLEP*IDRRKE
Trigger: CTCCTTCCTCCTGTCTATTCATGGCTCCAGTCCCAA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTGGGAGGGTATGGGTTaGAGCCGTGCCCCTCAGGTC +
Preference number: 2 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDWEGMG*SRAPQV
Trigger: GACCTGAGGGGCACGGCTGCAACCCATACCCTCCCA...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTCCAGATAAAACCCCCTaGTGGTCCTTCACTTGCCAG +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCPDKTP*WSFTCQ
Trigger: CTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGG...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTGTAGGGATGCACTGGTaGCATGGGCAGAGAGAACAG +
Preference number: 2 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLVGMHW*HGQREQ
Trigger: CTGTTCTCTCTGCCCATGGCACCAGTGCATCCCTAC...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCGGCCTGGTGAGGACTaGAAGCTCCCAGTTCCCTGC +
Preference number: 2 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDRPGED*KLPVPC
Trigger: GCAGGGAACTGGGAGCTTCCAGTCCTCACCAGGCCG...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTGATGCACTGGTGCCATaGGCAGAGAGAACAGAACCA +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCDALVP*AERTEP
Trigger: TGGTTCTGTTCTCTCTGCCCATGGCACCAGTGCATC...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATAGCCAGTGTCCACCCTaGCCCTCAGCCAGCCACCCA +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHSQCPP*PSASHP
Trigger: TGGGTGGCTGGCTGAGGGCCAGGGTGGACACTGGCT...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGAGCCAGTGTCCACCCTaGCCCTCAGCCAGCCACCCA +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRSQCPP*PSASHP
Trigger: TGGGTGGCTGGCTGAGGGCCAGGGTGGACACTGGCT...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACACTGTTCACCTACTTTaGCTCTCCTGGTTTATTCCC +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNTVHLL*LSWFIP
Trigger: GGGAATAAACCAGGAGAGCCAAAGTAGGTGAACAGT...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGGTCCAGCCAAGGCAGTaGCAGCACCAGACTCCCCAC +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRVQPRQ*QHQTPH
Trigger: GTGGGGAGTCTGGTGCTGTCACTGCCTTGGCTGGAC...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTTACAGTTCAGTGTATaGATGTGGTACAGGACAGCA +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNLQFSV*MWYRTA
Trigger: TGCTGTCCTGTACCACATTCATACACTGAACTGTAA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCTGGGAGGGTATGGGTTaGAGCCGTGCCCCTCAGGTC +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCWEGMG*SRAPQV
Trigger: GACCTGAGGGGCACGGCTGCAACCCATACCCTCCCA...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTGCTGGTCCTTCACTTaGCAGGGCGGTAACGGCCTG +
Preference number: 2 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDCWSFT*QGGNGL
Trigger: CAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCA...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTCTGGGTCTCAGTTCCTaGAATGACGGGTTTCTGGAG +
Preference number: 2 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLLGLSS*NDGFLE
Trigger: CTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAG...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGCACAGCCAAGGCTCCTaGAAGACGAAATCGGGGGTG +
Preference number: 2 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWHSQGS*KTKSGV
Trigger: CACCCCCGATTTCGTCTTCCAGGAGCCTTGGCTGTG...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTCTCTGAGTAGGCCTTaGGACAAAGAATCATACCAT +
Preference number: 2 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNSLSRP*DKESYH
Trigger: ATGGTATGATTCTTTGTCCCAAGGCCTACTCAGAGA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAATGTCCAACAGCCCCTaGGGCCTGCTTCCCACAGTA +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGMSNSP*GLLPTV
Trigger: TACTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACAT...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCTGCTGGTCCTTCACTTaGCAGGGCGGTAACGGCCTG +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCCWSFT*QGGNGL
Trigger: CAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCA...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAGTAGGGATGCACTGGTaGCATGGGCAGAGAGAACAG +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPVGMHW*HGQREQ
Trigger: CTGTTCTCTCTGCCCATGGCACCAGTGCATCCCTAC...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTCCTGGGGGCTGGGTaGCAGATGAAAGAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGLLGAG*QMKEGR
Trigger: TCTGCCTTCTTTCATCTGGCACCCAGCCCCCAGGAG...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTCACGGATGGGGACACTaGATCCTAGGTCAACAATTT +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCHGWGH*ILGQQF
Trigger: AAATTGTTGACCTAGGATGCAGTGTCCCCATCCGTG...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTCCCCACTCCACTCTaGTCAACCCTGAGTCCCCAA +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGLPTPL*STLSPQ
Trigger: TTGGGGACTCAGGGTTGAGCAGAGTGGAGTGGGGAG...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTCCTATAAGGAACACTaGATTGAGGACCCCTGGGAA +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSYKEH*IEDPWE
Trigger: TTCCCAGGGGTCCTCAATCCAGTGTTCCTTATAGGA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTACCAGGAAAGCAGAGTaGAATGGAGAAAAGAGGCAT +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCTRKAE*NGEKRH
Trigger: ATGCCTCTTTTCTCCATTTCACTCTGCTTTCCTGGT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGAAAGCCAAGATTGCCTaGGCTGGGCCCACTGTCTAT +
Preference number: 2 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWKAKIA*AGPTVY
Trigger: ATAGACAGTGGGCCCAGCTCAGGCAATCTTGGCTTT...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATTGGGACTGGAGCCATaGATAGACAGGAGGAAGGAG +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPLGLEP*IDRRKE
Trigger: CTCCTTCCTCCTGTCTATTCATGGCTCCAGTCCCAA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAGGGTTTCATCTGTGCTaGTGGAGCTTGGGAGGGTAT +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPGFHLC*WSLGGY
Trigger: ATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCC...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGCTCAAAAGCCAAGATTaGCTGAGCTGGGCCCACTGT +
Preference number: 2 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWLKSQD*LSWAHC
Trigger: ACAGTGGGCCCAGCTCAGGCAATCTTGGCTTTTGAG...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCTCCTGGGGGCTGGGTaGCAGATGAAAGAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCLLGAG*QMKEGR
Trigger: TCTGCCTTCTTTCATCTGGCACCCAGCCCCCAGGAG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGCTCCTGGGGGCTGGGTaGCAGATGAAAGAAGGCAGA +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRLLGAG*QMKEGR
Trigger: TCTGCCTTCTTTCATCTGGCACCCAGCCCCCAGGAG...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATGCACTGACTTGCTGTTaGTCCCTGTCCCCATGGTCC +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHALTCC*SLSPWS
Trigger: GGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGC...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAGATAAAACCCCCTGCTaGTCCTTCACTTGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGDKTPC*SFTCQG
Trigger: GCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATC...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGCACAGCCAAGGCTCCTaGAAGACGAAATCGGGGGTG +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRHSQGS*KTKSGV
Trigger: CACCCCCGATTTCGTCTTCCAGGAGCCTTGGCTGTG...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTACTGTTCACCTACTTTaGCTCTCCTGGTTTATTCCC +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCTVHLL*LSWFIP
Trigger: GGGAATAAACCAGGAGAGCCAAAGTAGGTGAACAGT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAGCCCACTGTCTATGCTaGACACAGAAGGACCCTTCA +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGAHCLC*TQKDPS
Trigger: TGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGC...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGTCCAGCCAAGGCAGTaGCAGCACCAGACTCCCCAC +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQVQPRQ*QHQTPH
Trigger: GTGGGGAGTCTGGTGCTGTCACTGCCTTGGCTGGAC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAAGGAGAAAAACACGGTaGCAAGCTTGGGCATCTCCT +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPRRKTR*QAWASP
Trigger: AGGAGATGCCCAAGCTTGTCACCGTGTTTTTCTCCT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTTACAGTTCAGTGTATaGATGTGGTACAGGACAGCA +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCLQFSV*MWYRTA
Trigger: TGCTGTCCTGTACCACATTCATACACTGAACTGTAA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCATCTCCCACCACCCTaGCACCTAATTGTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCHLPPP*HLIVWV
Trigger: GACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAAGCTGCTGTAAAACGTaGTGCACAGCCTTTAACCCC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPSCCKT*CTAFNP
Trigger: GGGGTTAAAGGCTGTGCAGCACGTTTTACAGCAGCT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATTTCATCTGTGCTGCTaGAGCTTGGGAGGGTATGGG +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGFHLCC*SLGGYG
Trigger: CCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGACACAGCCAAGGCTCCTaGAAGACGAAATCGGGGGTG +
Preference number: 2 (lower is better)
Translates to: YGQASLGITTATPIRNTGHSQGS*KTKSGV
Trigger: CACCCCCGATTTCGTCTTCCAGGAGCCTTGGCTGTG...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAGATGCACTGGTGCCATaGGCAGAGAGAACAGAACCA +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGDALVP*AERTEP
Trigger: TGGTTCTGTTCTCTCTGCCCATGGCACCAGTGCATC...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTAAAGGAAAGGAGGTATaGACAGGCAAGCTTAGGTAT +
Preference number: 2 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCKGKEV*TGKLRY
Trigger: ATACCTAAGCTTGCCTGTCCATACCTCCTTTCCTTT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATGCCAGATTGGAGATGTaGCTGCTGCAGCACCCTCAT +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHARLEM*LLQHPH
Trigger: ATGAGGGTGCTGCAGCAGCCACATCTCCAATCTGGC...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATGCCCACTGTCTATGCTaGACACAGAAGGACCCTTCA +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHAHCLC*TQKDPS
Trigger: TGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGC...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACAAAGAATCATACCATaGCCCCTGTCAACCCCAGCT +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGQRIIP*PLSTPA
Trigger: AGCTGGGGTTGACAGGGGTCATGGTATGATTCTTTG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCAAAGAATCATACCATaGCCCCTGTCAACCCCAGCT +
Preference number: 2 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDQRIIP*PLSTPA
Trigger: AGCTGGGGTTGACAGGGGTCATGGTATGATTCTTTG...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGGGGCTGGGTGCCAGATaGAAGAAGGCAGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRGLGAR*KKAERE
Trigger: TTCTCTTTCTGCCTTCTTTCATCTGGCACCCAGCCC...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATTCCTGGGCCTGGGGTaGGAGTTTCACATTAAGAAA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPFLGLG*EFHIKK
Trigger: TTTCTTAATGTGAAACTCTCACCCCAGGCCCAGGAA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATCCAGATAAAACCCCCTaGTGGTCCTTCACTTGCCAG +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHPDKTP*WSFTCQ
Trigger: CTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGG...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGCCAGATAAAACCCCCTaGTGGTCCTTCACTTGCCAG +
Preference number: 2 (lower is better)
Translates to: QASLGITTATPIRNTGLRPDKTP*WSFTCQ
Trigger: CTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGG...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGACATCTCCCACCACCCTaGCACCTAATTGTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: YGQASLGITTATPIRNTGHLPPP*HLIVWV
Trigger: GACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATG...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCGATGCACTGGTGCCATaGGCAGAGAGAACAGAACCA +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCDALVP*AERTEP
Trigger: TGGTTCTGTTCTCTCTGCCCATGGCACCAGTGCATC...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCGCCCACTGTCTATGCTaGACACAGAAGGACCCTTCA +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGAHCLC*TQKDPS
Trigger: TGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGC...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGAAAAGCCAAGATTGCCTaGGCTGGGCCCACTGTCTAT +
Preference number: 2 (lower is better)
Translates to: YGQASLGITTATPIRNTGKAKIA*AGPTVY
Trigger: ATAGACAGTGGGCCCAGCTCAGGCAATCTTGGCTTT...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCGGGCTGGGTGCCAGATaGAAGAAGGCAGAAAGAGAA +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGGLGAR*KKAERE
Trigger: TTCTCTTTCTGCCTTCTTTCATCTGGCACCCAGCCC...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACAAAGGGAACCGAGATaGATAAACCTCTCACTGGAC +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGQREPR*INLSLD
Trigger: GTCCAGTGAGAGGTTTATTCATCTCGGTTCCCTTTG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCGTATTCTGCTGTTCCTaGCAAGCCATGTCCAACAGC +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCVFCCS*QAMSNS
Trigger: GCTGTTGGACATGGCTTGGCAGGAACAGCAGAATAC...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCCTCAAAAGCCAAGATTaGCTGAGCTGGGCCCACTGT +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGLKSQD*LSWAHC
Trigger: ACAGTGGGCCCAGCTCAGGCAATCTTGGCTTTTGAG...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACACGGATGGGGACACTaGATCCTAGGTCAACAATTT +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGHGWGH*ILGQQF
Trigger: AAATTGTTGACCTAGGATGCAGTGTCCCCATCCGTG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACTCCCCACTCCACTCTaGTCAACCCTGAGTCCCCAA +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQLPTPL*STLSPQ
Trigger: TTGGGGACTCAGGGTTGAGCAGAGTGGAGTGGGGAG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCTTTCATCTGTGCTGCTaGAGCTTGGGAGGGTATGGG +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGFHLCC*SLGGYG
Trigger: CCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAA...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATGTCTACCTCACTTTTaGCTCCTGATCTCAAAAGCC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPCLPHF*LLISKA
Trigger: GGCTTTTGAGATCAGGAGCCAAAAGTGAGGTAGACA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAGGTATTTCTCAGACCTaGAAGACAGAGTGTGGGATA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPGISQT*KTECGI
Trigger: TATCCCACACTCTGTCTTCCAGGTCTGAGAAATACC...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTCACTTTTGGCTCCTaGTCTCAAAAGCCAAGATTG +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGLTFGS*SQKPRL
Trigger: CAATCTTGGCTTTTGAGATCAGGAGCCAAAAGTGAG...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACTCACTTTTGGCTCCTaGTCTCAAAAGCCAAGATTG +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGLTFGS*SQKPRL
Trigger: CAATCTTGGCTTTTGAGATCAGGAGCCAAAAGTGAG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACATCTCCCACCACCCTaGCACCTAATTGTCTGGGTC +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQHLPPP*HLIVWV
Trigger: GACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATTGGAGATGTGGCTGCTaGAGCACCCTCATAACAATA +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHWRCGC*STLITI
Trigger: TATTGTTATGAGGGTGCTGCAGCAGCCACATCTCCA...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATCAAAACTCTGCTTATaGCAAAGGCCAGATTGGAGA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPSKLCL*QRPDWR
Trigger: TCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACGGGGTGGGCCTCACCTaGCTCTGTGGCAGTATGCCA +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDGVGLT*LCGSMP
Trigger: TGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCC...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGATAAAACCCCCTGCTaGTCCTTCACTTGCCAGGGC +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQDKTPC*SFTCQG
Trigger: GCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAGAAAGCAGAGTGAAATaGAGAAAAGAGGCATTCGGA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPESRVK*RKEAFG
Trigger: TCCGAATGCCTCTTTTCTCCATTTCACTCTGCTTTC...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGATGTCTACCTCACTTTTaGCTCCTGATCTCAAAAGCC +
Preference number: 2 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGCLPHF*LLISKA
Trigger: GGCTTTTGAGATCAGGAGCCAAAAGTGAGGTAGACA...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATGTCTACCTCACTTTTaGCTCCTGATCTCAAAAGCC +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGCLPHF*LLISKA
Trigger: GGCTTTTGAGATCAGGAGCCAAAAGTGAGGTAGACA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCACTACTTTGGCTCTCCTaGTTTATTCCCATGTTCCTA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPLLWLS*FIPMFL
Trigger: TAGGAACATGGGAATAAACCAGGAGAGCCAAAGTAG...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTGCTTCCCCCTCCCCTaGAGGATGAGGGTCACCTAC +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDCFPLP*RMRVTY
Trigger: GTAGGTGACCCTCATCCTTCAGGGGAGGGGGAAGCA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGGGTTTCATCTGTGCTaGTGGAGCTTGGGAGGGTAT +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQGFHLC*WSLGGY
Trigger: ATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACGCCTCTGTGGCAGTATaGCAGCAGCCTGGGGAAACC +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDASVAV*QQPGET
Trigger: GGTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGC...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACGAAAGCAGAGTGAAATaGAGAAAAGAGGCATTCGGA +
Preference number: 2 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDESRVK*RKEAFG
Trigger: TCCGAATGCCTCTTTTCTCCATTTCACTCTGCTTTC...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGAGAAAGCAGAGTGAAATaGAGAAAAGAGGCATTCGGA +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGESRVK*RKEAFG
Trigger: TCCGAATGCCTCTTTTCTCCATTTCACTCTGCTTTC...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCACACAGGACATTCAAGTaGCTGTGTTTATTCTTTGTC +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPHRTFK*LCLFFV
Trigger: GACAAAGAATAAACACAGCCACTTGAATGTCCTGTG...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCACCAGGAAAGCAGAGTaGAATGGAGAAAAGAGGCAT +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGTRKAE*NGEKRH
Trigger: ATGCCTCTTTTCTCCATTTCACTCTGCTTTCCTGGT...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGAACCAGGAAAGCAGAGTaGAATGGAGAAAAGAGGCAT +
Preference number: 2 (lower is better)
Translates to: YGQASLGITTATPIRNTGTRKAE*NGEKRH
Trigger: ATGCCTCTTTTCTCCATTTCACTCTGCTTTCCTGGT...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACATGTCCAACAGCCCCTaGGGCCTGCTTCCCACAGTA +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDMSNSP*GLLPTV
Trigger: TACTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACAT...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCCTCACTTTTGGCTCCTaGTCTCAAAAGCCAAGATTG +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGLTFGS*SQKPRL
Trigger: CAATCTTGGCTTTTGAGATCAGGAGCCAAAAGTGAG...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGTATTCTGCTGTTCCTaGCAAGCCATGTCCAACAGC +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQVFCCS*QAMSNS
Trigger: GCTGTTGGACATGGCTTGGCAGGAACAGCAGAATAC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACGCACTGACTTGCTGTTaGTCCCTGTCCCCATGGTCC +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDALTCC*SLSPWS
Trigger: GGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGC...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATTCAAAACTCTGCTTATaGCAAAGGCCAGATTGGAGA +
Preference number: 2 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHSKLCL*QRPDWR
Trigger: TCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGA...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAAGGAGGAAAGAAAGCTaGTTTAGTTTACTCTTCCTA +
Preference number: 2 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPRRKES*FSLLFL
Trigger: TAGGAAGAGTAAACTAAAGCAGCTTTCTTTCCTCCT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACACAGGACATTCAAGTaGCTGTGTTTATTCTTTGTC +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGHRTFK*LCLFFV
Trigger: GACAAAGAATAAACACAGCCACTTGAATGTCCTGTG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCAAAGGAAAGGAGGTATaGACAGGCAAGCTTAGGTAT +
Preference number: 2 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCKGKEV*TGKLRY
Trigger: ATACCTAAGCTTGCCTGTCCATACCTCCTTTCCTTT...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATTTGTAGTCTTTCAATaGGGACCATTTGGCTTCCTT +
Preference number: 2 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGFVVFQ*GPFGFL
Trigger: AAGGAAGCCAAATGGTCCCCATTGAAAGACTACAAA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATCTCTGAGTAGGCCTTaGGACAAAGAATCATACCAT +
Preference number: 2 (lower is better)
Translates to: YGQASLGITTATPIRNTGSLSRP*DKESYH
Trigger: ATGGTATGATTCTTTGTCCCAAGGCCTACTCAGAGA...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAATCCTATAAGGAACACTaGATTGAGGACCCCTGGGAA +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQSYKEH*IEDPWE
Trigger: TTCCCAGGGGTCCTCAATCCAGTGTTCCTTATAGGA...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CAA 90 bp CCCATTCAGGCAGCATTAGATGAGCTAAGTGACTGTTCACCTACTTaGGCTCTCCTGGTTTATTCCCATGTTCCTACATTAAGAGACCTT +
Preference number: 2 (lower is better)
Translates to: PIQAALDELSDCSPT*ALLVYSHVPTLRDL
Trigger: AAGGTCTCTTAATGTAGGAACATGGGAATAAACCAGGAGAGCCAAAGTAGGTGAACAGTCACTTAGCTCATCTAATGCTGCCTGAATGGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACCCTGGGCCAGCTCCTTaGATCTTCTCTCTTCAGAGT +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDPGPAP*IFSLQS
Trigger: ACTCTGAAGAGAGAAGATGCAAGGAGCTGGCCCAGG...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCCACAGGACATTCAAGTaGCTGTGTTTATTCTTTGTC +
Preference number: 2 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGHRTFK*LCLFFV
Trigger: GACAAAGAATAAACACAGCCACTTGAATGTCCTGTG...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAATCTCTGAGTAGGCCTTaGGACAAAGAATCATACCAT +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQSLSRP*DKESYH
Trigger: ATGGTATGATTCTTTGTCCCAAGGCCTACTCAGAGA...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACTACTTTGGCTCTCCTaGTTTATTCCCATGTTCCTA +
Preference number: 2 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQLLWLS*FIPMFL
Trigger: TAGGAACATGGGAATAAACCAGGAGAGCCAAAGTAG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTGCTGTAAAACGTGCTaGACAGCCTTTAACCCCAAA +
Preference number: 2 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDCCKTC*TAFNPK
Trigger: TTTGGGGTTAAAGGCTGTGCAGCACGTTTTACAGCA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp CCCTGCTGTCTTCTGCCCGGGTTTCATCTGTGCTGCTaGAGCTTGGGAGGGTATGGGTTGCAGCCGTGCCCC +
Preference number: 3 (lower is better)
Translates to: PCCLLPGFHLCC*SLGGYGLQPCP
Trigger: GGGGCACGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp GCGAGCCCAGATAAAACCCCCTGCTGGTCCTTCACTTaGCAGGGCGGTAACGGCCTGGTGAGGACTGGAAGC +
Preference number: 3 (lower is better)
Translates to: ASPDKTPCWSFT*QGGNGLVRTGS
Trigger: GCTTCCAGTCCTCACCAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGGGCTCGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp CCAGTTCCCTGCTGTCTTCTGCCCGGGTTTCATCTGTaGTGCTGGAGCTTGGGAGGGTATGGGTTGCAGCCG +
Preference number: 3 (lower is better)
Translates to: PVPCCLLPGFHL*CWSLGGYGLQP
Trigger: CGGCTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAGATGAAACCCGGGCAGAAGACAGCAGGGAACTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp ACGGGTTTCTGGAGTGCGAGCCCAGATAAAACCCCCTaGTGGTCCTTCACTTGCCAGGGCGGTAACGGCCTG +
Preference number: 3 (lower is better)
Translates to: TGFWSASPDKTP*WSFTCQGGNGL
Trigger: CAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGGGCTCGCACTCCAGAAACCCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp GGTTTCTGGAGTGCGAGCCCAGATAAAACCCCCTGCTaGTCCTTCACTTGCCAGGGCGGTAACGGCCTGGTG +
Preference number: 3 (lower is better)
Translates to: GFWSASPDKTPC*SFTCQGGNGLV
Trigger: CACCAGGCCGTTACCGCCCTGGCAAGTGAAGGACCAGCAGGGGGTTTTATCTGGGCTCGCACTCCAGAAACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp GGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTaGGGAAACCAAGTCCCTGCTCGGGTACAAACCCTA +
Preference number: 3 (lower is better)
Translates to: GLTCLCGSMPAA*GNQVPARVQTL
Trigger: TAGGGTTTGTACCCGAGCAGGGACTTGGTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp GGCCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTaGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAG +
Preference number: 3 (lower is better)
Translates to: GQLLASSLFRVG*ASPASVAVCQQ
Trigger: CTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp TCCTGGGCCAGCTCCTTGCATCTTCTCTCTTCAGAGTaGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCC +
Preference number: 3 (lower is better)
Translates to: SWASSLHLLSSE*GGPHLPLWQYA
Trigger: GGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGGCCCAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 72 bp TTCTGCTGTTCCTGCCAAGCCATGTCCAACAGCCCCTaGGGCCTGCTTCCCACAGTAGGGATGCACTGGTGC +
Preference number: 3 (lower is better)
Translates to: FCCSCQAMSNSP*GLLPTVGMHWC
Trigger: GCACCAGTGCATCCCTACTGTGGGAAGCAGGCCTCAGGGGCTGTTGGACATGGCTTGGCAGGAACAGCAGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp TGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTaGCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAAC +
Preference number: 3 (lower is better)
Translates to: CIFSLQSGVGLT*LCGSMPAAWGN
Trigger: GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTCTGTGCTGCTGGAGCTaGGGAGGGTATGGGTTGCAG +
Preference number: 3 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLLCCWS*GGYGLQ
Trigger: CTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAG...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTTGGGAGGGTATGGGTaGCAGCCGTGCCCCTCAGGT +
Preference number: 3 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDLGGYG*QPCPSG
Trigger: ACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAA...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTCATTGGTGACCCTCTaGTCTCTGAGTAGGCCTTGG +
Preference number: 3 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSLVTL*SLSRPW
Trigger: CCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACGTGAGCCTCATCATTTaGATGGGTAAGGGAGTAGTT +
Preference number: 3 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNVSLII*MGKGVV
Trigger: AACTACTCCCTTACCCATCAAAATGATGAGGCTCAC...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 72 bp AGCCAAGATTGCCTGAGCTGGGCCCACTGTCTATGCTaGACACAGAAGGACCCTTCAGGCCACTCCTTCAGG +
Preference number: 3 (lower is better)
Translates to: SQDCLSWAHCLC*TQKDPSGHSFR
Trigger: CCTGAAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTCAGGCAATCTTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATTTGGGAGGGTATGGGTaGCAGCCGTGCCCCTCAGGT +
Preference number: 3 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHLGGYG*QPCPSG
Trigger: ACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAA...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTTATTCTTTGTCTCATaGGTGACCCTCTTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNLFFVS*VTLLSL
Trigger: CAGAGACAAGAGGGTCACCAATGAGACAAAGAATAA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp CCAAGAGCCATAGCCATGGCTCATCTCCCACCACCCTaGCACCTAATTGTCTGGGTCTCAGTTCCTGGAATG +
Preference number: 3 (lower is better)
Translates to: PRAIAMAHLPPP*HLIVWVSVPGM
Trigger: CATTCCAGGAACTGAGACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATGAGCCATGGCTATGGCTCTTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp ATTGTCTGGGTCTCAGTTCCTGGAATGACGGGTTTCTaGAGTGCGAGCCCAGATAAAACCCCCTGCTGGTCC +
Preference number: 3 (lower is better)
Translates to: IVWVSVPGMTGF*SASPDKTPCWS
Trigger: GGACCAGCAGGGGGTTTTATCTGGGCTCGCACTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAGACAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 72 bp AACATGGGCTCCTTCCACCAACCAAGGCTAAGACATTaGGGCCTAGGTAGGAGGATTAGCAGGGGGCTTCCA +
Preference number: 3 (lower is better)
Translates to: NMGSFHQPRLRH*GLGRRISRGLP
Trigger: TGGAAGCCCCCTGCTAATCCTCCTACCTAGGCCTCAATGTCTTAGCCTTGGTTGGTGGAAGGAGCCCATGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp ATGGCTCATCTCCCACCACCCTGCCACCTAATTGTCTaGGTCTCAGTTCCTGGAATGACGGGTTTCTGGAGT +
Preference number: 3 (lower is better)
Translates to: MAHLPPPCHLIV*VSVPGMTGFWS
Trigger: ACTCCAGAAACCCGTCATTCCAGGAACTGAGACCCAGACAATTAGGTGGCAGGGTGGTGGGAGATGAGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGACTGTGCTGCTGGAGCTaGGGAGGGTATGGGTTGCAG +
Preference number: 3 (lower is better)
Translates to: YGQASLGITTATPIRNTGLCCWS*GGYGLQ
Trigger: CTGCAACCCATACCCTCCCAAGCTCCAGCAGCACAG...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 72 bp AAGGCTCCTGGAAGACGAAATCGGGGGTGTAAAAACTaGGATTCAGTGTTCAGCGCGACGAACCTGGGCATG +
Preference number: 3 (lower is better)
Translates to: KAPGRRNRGCKN*DSVFSATNLGM
Trigger: CATGCCCAGGTTCGTCGCGCTGAACACTGAATCTCAGTTTTTACACCCCCGATTTCGTCTTCCAGGAGCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR TCA 72 bp TGTCCGCGGTCACCTGGGGGAAGAATATGGGGGCAGTaGGATGAGACAAATGTGTTGATAGAGCAGGGTAGA +
Preference number: 3 (lower is better)
Translates to: CPRSPGGRIWGQ*DETNVLIEQGR
Trigger: TCTACCCTGCTCTATCAACACATTTGTCTCATCTCACTGCCCCCATATTCTTCCCCCAGGTGACCGCGGACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp CTGCTGCAGCACCCTCATAACAATACTGCACTGACTTaGTGTTGCTCCCTGTCCCCATGGTCCACACCAAAT +
Preference number: 3 (lower is better)
Translates to: LLQHPHNNTALT*CCSLSPWSTPN
Trigger: ATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTGCAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp CCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATaGACAGGCAAGCTTAGGTATCACCACAGCCACTCC +
Preference number: 3 (lower is better)
Translates to: PHGPHQIKGKEV*TGKLRYHHSHS
Trigger: GGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGATCATTGGTGACCCTCTaGTCTCTGAGTAGGCCTTGG +
Preference number: 3 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGSLVTL*SLSRPW
Trigger: CCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGA...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTaGTCCCTGTCCCCATGGTCCACACCAAATCAAAGG +
Preference number: 3 (lower is better)
Translates to: QHPHNNTALTCC*SLSPWSTPNQR
Trigger: CCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp GACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATaGCAAAGGCCAGATTGGAGATGTGGCTGCTGCAGC +
Preference number: 3 (lower is better)
Translates to: DKLGHLLSKLCL*QRPDWRCGCCS
Trigger: GCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR GCA 72 bp CACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTaGTTATGCCAAAGGCCAGATTGGAGATGTGGCTGC +
Preference number: 3 (lower is better)
Translates to: HGDKLGHLLSKL*LCQRPDWRCGC
Trigger: GCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp GTCTCATTGGTGACCCTCTTGTCTCTGAGTAGGCCTTaGGACAAAGAATCATACCATGACCCCTGTCAACCC +
Preference number: 3 (lower is better)
Translates to: VSLVTLLSLSRP*DKESYHDPCQP
Trigger: GGGTTGACAGGGGTCATGGTATGATTCTTTGTCCCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATCATTGGTGACCCTCTaGTCTCTGAGTAGGCCTTGG +
Preference number: 3 (lower is better)
Translates to: YGQASLGITTATPIRNTGSLVTL*SLSRPW
Trigger: CCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGA...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp AATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATaGTCCACACCAAATCAAAGGAAAGGAGGTATGGAC +
Preference number: 3 (lower is better)
Translates to: NTALTCCCSLSP*STPNQRKGGMD
Trigger: GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTTGGGAGGGTATGGGTaGCAGCCGTGCCCCTCAGGT +
Preference number: 3 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDLGGYG*QPCPSG
Trigger: ACCTGAGGGGCACGGCTGCAACCCATACCCTCCCAA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGTTATTCTTTGTCTCATaGGTGACCCTCTTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWLFFVS*VTLLSL
Trigger: CAGAGACAAGAGGGTCACCAATGAGACAAAGAATAA...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CCA 72 bp AAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTaGCTGCTGCAGCACCCTCATAACAATACTGCACTG +
Preference number: 3 (lower is better)
Translates to: KTLLMPKARLEM*LLQHPHNNTAL
Trigger: CAGTGCAGTATTGTTATGAGGGTGCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGTGAGCCTCATCATTTaGATGGGTAAGGGAGTAGTT +
Preference number: 3 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQVSLII*MGKGVV
Trigger: AACTACTCCCTTACCCATCAAAATGATGAGGCTCAC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGATGAGACAAATGTGTaGATAGAGCAGGGTAGACAA +
Preference number: 3 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQDETNV*IEQGRQ
Trigger: TTGTCTACCCTGCTCTATCAACACATTTGTCTCATC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTTCAATGGGGACCATTaGGCTTCCTTGAGGAATGGA +
Preference number: 3 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDFNGDH*ASLRNG
Trigger: TCCATTCCTCAAGGAAGCCAAATGGTCCCCATTGAA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTTATTCTTTGTCTCATaGGTGACCCTCTTGTCTCTG +
Preference number: 3 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDLFFVS*VTLLSL
Trigger: CAGAGACAAGAGGGTCACCAATGAGACAAAGAATAA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR-3UTR CAA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACGATGAGACAAATGTGTaGATAGAGCAGGGTAGACAA +
Preference number: 3 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDDETNV*IEQGRQ
Trigger: TTGTCTACCCTGCTCTATCAACACATTTGTCTCATC...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACTGCCACTCAATCATGTaGGCCACCCGGCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNCHSIM*ATRPWP
Trigger: GGGCCAAGGCCGGGTGGCCCACATGATTGAGTGGCA...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp AGTGGGGTGGGCCTCACCTGCCTCTGTGGCAGTATGCCAGCAGCCTGGGGAAACAAGGCCGATGGAGACTaGTGCCATGCAGCGAGCTGG +
Preference number: 4 (lower is better)
Translates to: SGVGLTCLCGSMPAAWGNKADGD*CHAASW
Trigger: CCAGCTCGCTGCATGGCAGCAGTCTCCATCGGCCTT...GTTTCCCCAGGCTGCTGGCATACTGCCACAGAGGCAGGTGAGGCCCACCCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTGCCTTCCCCCAGCCCTaGCACTCAATCATGTGGGCC +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCAFPQP*HSIMWA
Trigger: GGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGC...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTCTCTCGTGGGGAAAGTaGCTCCAGATCCCGGCATCC +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCLSWGK*LQIPAS
Trigger: GGATGCCGGGATCTGGAGTCACTTTCCCCACGAGAG...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTGGAGACTGCTGCCATaGAGCGAGCTGGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCWRLLP*SELVLS
Trigger: GGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTGCCTTCCCCCAGCCCTaGCACTCAATCATGTGGGCC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLAFPQP*HSIMWA
Trigger: GGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGC...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTTGCCACTCAATCATGTaGGCCACCCGGCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLCHSIM*ATRPWP
Trigger: GGGCCAAGGCCGGGTGGCCCACATGATTGAGTGGCA...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTCAGACACCTTCCGGCTaGGAGCAGTGGACATCTCTG +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCQTPSG*EQWTSL
Trigger: CAGAGATGTCCACTGCTCTCAGCCGGAAGGTGTCTG...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTTGGAGACTGCTGCCATaGAGCGAGCTGGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLWRLLP*SELVLS
Trigger: GGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCA...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTAAGGCCGATGGAGACTaGTGCCATGCAGCGAGCTGG +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLKADGD*CHAASW
Trigger: CCAGCTCGCTGCATGGCAGCAGTCTCCATCGGCCTT...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTACAGTACATCCCCTGTaGCACGTAGGAGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCTVHPL*HVGVRP
Trigger: TGGCCTCACTCCTACGTGTCACAGGGGATGTACTGT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTATGCAGGCTCGGCTGTaGGTCATCAAATGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLMQARL*VIKCRA
Trigger: GGCCCTGCATTTGATGACTCACAGCCGAGCCTGCAT...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTCTGAGCAGAGTATCCTaGAGCAGGTTGGGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLLSRVS*SRLGRP
Trigger: GGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAG...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTCAGACACCTTCCGGCTaGGAGCAGTGGACATCTCTG +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLQTPSG*EQWTSL
Trigger: CAGAGATGTCCACTGCTCTCAGCCGGAAGGTGTCTG...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTGCACACCTGAGGATGTaGCATCAGACACCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLAHLRM*HQTPSG
Trigger: GCCGGAAGGTGTCTGATGTCACATCCTCAGGTGTGC...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTAGCAGTGGACATCTCTaGGTCCTCTCGTGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSSGHL*VLSWGK
Trigger: CTTTCCCCACGAGAGGACCCAGAGATGTCCACTGCT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTACAGTACATCCCCTGTaGCACGTAGGAGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLTVHPL*HVGVRP
Trigger: TGGCCTCACTCCTACGTGTCACAGGGGATGTACTGT...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACGCCTTCCCCCAGCCCTaGCACTCAATCATGTGGGCC +
Preference number: 4 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDAFPQP*HSIMWA
Trigger: GGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGC...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTAAGTGGTGTCCTCCATaGAAAGCTCTGTCGAAGGCC +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCKWCPP*KALSKA
Trigger: GGCCTTCGACAGAGCTTTCCATGGAGGACACCACTT...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000031891.15
CDS-3UTR TCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGCTGAGCAGAGTATCCTaGAGCAGGTTGGGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWLSRVS*SRLGRP
Trigger: GGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAG...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACTCTCGTGGGGAAAGTaGCTCCAGATCCCGGCATCC +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGLSWGK*LQIPAS
Trigger: GGATGCCGGGATCTGGAGTCACTTTCCCCACGAGAG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGGCACACCTGAGGATGTaGCATCAGACACCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWAHLRM*HQTPSG
Trigger: GCCGGAAGGTGTCTGATGTCACATCCTCAGGTGTGC...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGATGGAGACTGCTGCCATaGAGCGAGCTGGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGWRLLP*SELVLS
Trigger: GGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCA...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTTATCCTGAAGCAGGTTaGGAAGGCCCCATGTCATGC +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLYPEAG*EGPMSC
Trigger: GCATGACATGGGGCCTTCCCAACCTGCTTCAGGATA...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCTCTACAGGTCCCCTaGCCAGTTCCACCCCACCAA +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGPLQVP*PVPPHQ
Trigger: TTGGTGGGGTGGAACTGGCCAGGGGACCTGTAGAGG...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACCTTCTCGCCATCACTaGGGTCAGAGTAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGPSRHH*GQSRRL
Trigger: CAGACGCCTACTCTGACCTCAGTGATGGCGAGAAGG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCTTCTCGCCATCACTaGGGTCAGAGTAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGPSRHH*GQSRRL
Trigger: CAGACGCCTACTCTGACCTCAGTGATGGCGAGAAGG...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACTTCCCAGGCGTCAGATaGCCCCAGACAGTACATCCC +
Preference number: 4 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDFPGVR*PQTVHP
Trigger: GGGATGTACTGTCTGGGGTCATCTGACGCCTGGGAA...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCTCTCGTGGGGAAAGTaGCTCCAGATCCCGGCATCC +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCLSWGK*LQIPAS
Trigger: GGATGCCGGGATCTGGAGTCACTTTCCCCACGAGAG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAGCACACCTGAGGATGTaGCATCAGACACCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGAHLRM*HQTPSG
Trigger: GCCGGAAGGTGTCTGATGTCACATCCTCAGGTGTGC...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCTGCCACTCAATCATGTaGGCCACCCGGCCTTGGCCC +
Preference number: 4 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGCHSIM*ATRPWP
Trigger: GGGCCAAGGCCGGGTGGCCCACATGATTGAGTGGCA...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp GAGCTGGGCCCACTGTCTATGCTGAACACAGAAGGACCCTTCAGGCCACTCCTTATAGGATCCGGTAGCTaGAGATGCAATGAGGGACTG +
Preference number: 4 (lower is better)
Translates to: ELGPLSMLNTEGPFRPLLIGSGS*RCNEGL
Trigger: CAGTCCCTCATTGCATCTCCAGCTACCGGATCCTAT...AAGGAGTGGCCTGAAGGGTCCTTCTGTGTTCAGCATAGACAGTGGGCCCAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCCTCTACAGGTCCCCTaGCCAGTTCCACCCCACCAA +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCPLQVP*PVPPHQ
Trigger: TTGGTGGGGTGGAACTGGCCAGGGGACCTGTAGAGG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAAGCAGTGGACATCTCTaGGTCCTCTCGTGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPSSGHL*VLSWGK
Trigger: CTTTCCCCACGAGAGGACCCAGAGATGTCCACTGCT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTCGGAAGGATGGAAGTaGTGTCCTCCATGGAAAGAT +
Preference number: 4 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSEGWK*CPPWKD
Trigger: ATCTTTCCATGGAGGACACCACTTCCATCCTTCCGA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGTTCCCAGGCGTCAGATaGCCCCAGACAGTACATCCC +
Preference number: 4 (lower is better)
Translates to: QASLGITTATPIRNTGLRFPGVR*PQTVHP
Trigger: GGGATGTACTGTCTGGGGTCATCTGACGCCTGGGAA...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGATGCAGGCTCGGCTGTaGGTCATCAAATGCAGGGCC +
Preference number: 4 (lower is better)
Translates to: QASLGITTATPIRNTGLRMQARL*VIKCRA
Trigger: GGCCCTGCATTTGATGACTCACAGCCGAGCCTGCAT...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCTGAGCAGAGTATCCTaGAGCAGGTTGGGAAGGCCC +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCLSRVS*SRLGRP
Trigger: GGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATCAGACACCTTCCGGCTaGGAGCAGTGGACATCTCTG +
Preference number: 4 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHQTPSG*EQWTSL
Trigger: CAGAGATGTCCACTGCTCTCAGCCGGAAGGTGTCTG...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAAGTTGTCACTGTAGTTaGAGTCCAGTGGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPSCHCS*SPVAPG
Trigger: CCCAGGAGCCACTGGACTGCAACTACAGTGACAACT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACAGATCCCGGCATCCTaGATCTTCTTCCTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGQIPAS*IFFLLR
Trigger: CCTGAGGAGGAAGAAGATGCAGGATGCCGGGATCTG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGCTGAGAATGATGACTTaGCCAGGGCCCCAATGCCAT +
Preference number: 4 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWLRMMT*PGPQCH
Trigger: ATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAG...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGACTCCTCAGGGGCCAGTaGTCTCTTCTCTTCCTCTAC +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGLLRGQ*SLLFLY
Trigger: GTAGAGGAAGAGAAGAGACCACTGGCCCCTGAGGAG...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCTCCTCAGGGGCCAGTaGTCTCTTCTCTTCCTCTAC +
Preference number: 4 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDLLRGQ*SLLFLY
Trigger: GTAGAGGAAGAGAAGAGACCACTGGCCCCTGAGGAG...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGAAGCAGTGGACATCTCTaGGTCCTCTCGTGGGGAAAG +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGSSGHL*VLSWGK
Trigger: CTTTCCCCACGAGAGGACCCAGAGATGTCCACTGCT...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCCCTTCTCGCCATCACTaGGGTCAGAGTAGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGPSRHH*GQSRRL
Trigger: CAGACGCCTACTCTGACCTCAGTGATGGCGAGAAGG...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCTTCCCAGGCGTCAGATaGCCCCAGACAGTACATCCC +
Preference number: 4 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGFPGVR*PQTVHP
Trigger: GGGATGTACTGTCTGGGGTCATCTGACGCCTGGGAA...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACAAAGGTGGAGGCTCCTaGGCAGAGTATCCTGAAGCA +
Preference number: 4 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDKGGGS*AEYPEA
Trigger: TGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTT...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGAAAGGACTGCACACCTaGGGATGTGACATCAGACAC +
Preference number: 4 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWKGLHT*GCDIRH
Trigger: GTGTCTGATGTCACATCCTCAGGTGTGCAGTCCTTT...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAAGTTGTCACTGTAGTTaGAGTCCAGTGGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGSCHCS*SPVAPG
Trigger: CCCAGGAGCCACTGGACTGCAACTACAGTGACAACT...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCAATAGGATCCGGTAGCTaGAGATGCAATGAGGGACTG +
Preference number: 4 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPIGSGS*RCNEGL
Trigger: CAGTCCCTCATTGCATCTCCAGCTACCGGATCCTAT...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGATACCCCCAACAAAGGTaGAGGCTCCTGAGCAGAGTA +
Preference number: 4 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGYPQQR*RLLSRV
Trigger: TACTCTGCTCAGGAGCCTCCACCTTTGTTGGGGGTA...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCCTCCTCAGGGGCCAGTaGTCTCTTCTCTTCCTCTAC +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCLLRGQ*SLLFLY
Trigger: GTAGAGGAAGAGAAGAGACCACTGGCCCCTGAGGAG...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGAACAGTACATCCCCTGTaGCACGTAGGAGTGAGGCCA +
Preference number: 4 (lower is better)
Translates to: YGQASLGITTATPIRNTGTVHPL*HVGVRP
Trigger: TGGCCTCACTCCTACGTGTCACAGGGGATGTACTGT...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp GTGGTACAGGACAGCATCACAGATGAACAGAATCACTCTAGCGGTGAGCCTCATAAAGGTGGAGGCTCCTaGGCAGAGTATCCTGAAGCA +
Preference number: 4 (lower is better)
Translates to: VVQDSITDEQNHSSGEPHKGGGS*AEYPEA
Trigger: TGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTT...ATGAGGCTCACCGCTAGAGTGATTCTGTTCATCTGTGATGCTGTCCTGTACCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGAAAAGGACTGCACACCTaGGGATGTGACATCAGACAC +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGKGLHT*GCDIRH
Trigger: GTGTCTGATGTCACATCCTCAGGTGTGCAGTCCTTT...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATCACATGGTCCTTCATaGTCCTCGAGATCCCTGAGA +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGSHGPS*SSRSLR
Trigger: TCTCAGGGATCTCGAGGAGCATGAAGGACCATGTGA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATCCGGTAGCTGGAGATaGAATGAGGGACTGATCACT +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGSGSWR*NEGLIT
Trigger: AGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGAATAGGATCCGGTAGCTaGAGATGCAATGAGGGACTG +
Preference number: 4 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGIGSGS*RCNEGL
Trigger: CAGTCCCTCATTGCATCTCCAGCTACCGGATCCTAT...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCTATCCTGAAGCAGGTTaGGAAGGCCCCATGTCATGC +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCYPEAG*EGPMSC
Trigger: GCATGACATGGGGCCTTCCCAACCTGCTTCAGGATA...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACCTCTACAGGTCCCCTaGCCAGTTCCACCCCACCAA +
Preference number: 4 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQPLQVP*PVPPHQ
Trigger: TTGGTGGGGTGGAACTGGCCAGGGGACCTGTAGAGG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACCTGTCCATGTTGATCTaGTCAACATCCTTGAGGCCT +
Preference number: 4 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDLSMLI*STSLRP
Trigger: AGGCCTCAAGGATGTTGATCAGATCAACATGGACAG...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000031891.15
ENSMUST00000143278.8
CDS-3UTR TCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGAAAGGACTGCACACCTaGGGATGTGACATCAGACAC +
Preference number: 4 (lower is better)
Translates to: QASLGITTATPIRNTGLRKGLHT*GCDIRH
Trigger: GTGTCTGATGTCACATCCTCAGGTGTGCAGTCCTTT...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATTGGAGATGTGGCTGCTGCTCACATGGTCCTTCATaGTCCTCGAGATCCCTGAGA +
Preference number: 4 (lower is better)
Translates to: LLSKLCLCQRPDWRCGCCSHGPS*SSRSLR
Trigger: TCTCAGGGATCTCGAGGAGCATGAAGGACCATGTGA...GCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATTGAGGTCCGGTAGCTGGAGATaGAATGAGGGACTGATCACT +
Preference number: 4 (lower is better)
Translates to: QASLGITTATPIRNTGLRSGSWR*NEGLIT
Trigger: AGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGA...CCTCAATCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCTACCCCCAACAAAGGTaGAGGCTCCTGAGCAGAGTA +
Preference number: 4 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGYPQQR*RLLSRV
Trigger: TACTCTGCTCAGGAGCCTCCACCTTTGTTGGGGGTA...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGATCGGAAGGATGGAAGTaGTGTCCTCCATGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: YGQASLGITTATPIRNTGSEGWK*CPPWKA
Trigger: AGCTTTCCATGGAGGACACCACTTCCATCCTTCCGA...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000031891.15
CDS-3UTR TCA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGACTGTCCATGTTGATCTaGTCAACATCCTTGAGGCCT +
Preference number: 4 (lower is better)
Translates to: YGQASLGITTATPIRNTGLSMLI*STSLRP
Trigger: AGGCCTCAAGGATGTTGATCAGATCAACATGGACAG...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031891.15
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAAGTTGTCACTGTAGTTaGAGTCCAGTGGCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQSCHCS*SPVAPG
Trigger: CCCAGGAGCCACTGGACTGCAACTACAGTGACAACT...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACTGAGAATGATGACTTaGCCAGGGCCCCAATGCCAT +
Preference number: 4 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQLRMMT*PGPQCH
Trigger: ATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAATCCGGTAGCTGGAGATaGAATGAGGGACTGATCACT +
Preference number: 4 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQSGSWR*NEGLIT
Trigger: AGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGA...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CAA 72 bp AGGACATTCAAGTGGCTGTGTTTATTCTTTGTCTCATaGGTGACCCTCTTGTCTCTGAGTAGGCCTTGGGAC +
Preference number: 4 (lower is better)
Translates to: RTFKWLCLFFVS*VTLLSLSRPWD
Trigger: GTCCCAAGGCCTACTCAGAGACAAGAGGGTCACCAATGAGACAAAGAATAAACACAGCCACTTGAATGTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
3UTR CAA 72 bp TCTCCTATCAAAACTCTGCTTATGCCAAAGGCCAGATaGGAGATGTGGCTGCTGCAGCACCCTCATAACAAT +
Preference number: 4 (lower is better)
Translates to: SPIKTLLMPKAR*EMWLLQHPHNN
Trigger: ATTGTTATGAGGGTGCTGCAGCAGCCACATCTCCAATCTGGCCTTTGGCATAAGCAGAGTTTTGATAGGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR GCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACCAGATCCCGGCATCCTaGATCTTCTTCCTCCTCAGG +
Preference number: 4 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDQIPAS*IFFLLR
Trigger: CCTGAGGAGGAAGAAGATGCAGGATGCCGGGATCTG...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAATCGGAAGGATGGAAGTaGTGTCCTCCATGGAAAGAT +
Preference number: 4 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQSEGWK*CPPWKD
Trigger: ATCTTTCCATGGAGGACACCACTTCCATCCTTCCGA...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACCTGAGAATGATGACTTaGCCAGGGCCCCAATGCCAT +
Preference number: 4 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDLRMMT*PGPQCH
Trigger: ATGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAG...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CCA 90 bp AGAAAACATGCTAAGACTGACCATAAAAATGGGTATTTCTCAGACCTGGAAGACTATCCTGAAGCAGGTTaGGAAGGCCCCATGTCATGC +
Preference number: 4 (lower is better)
Translates to: RKHAKTDHKNGYFSDLEDYPEAG*EGPMSC
Trigger: GCATGACATGGGGCCTTCCCAACCTGCTTCAGGATA...GTCTTCCAGGTCTGAGAAATACCCATTTTTATGGTCAGTCTTAGCATGTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 90 bp TCTGATGCCCAGTCAGTGTCTACCCCCAACAAAGGTGGAGGCTCCTaGGCAGAGTATCCTGAAGCAGGTTGGGAAGGCCCCATGTCATGC +
Preference number: 5 (lower is better)
Translates to: SDAQSVSTPNKGGGS*AEYPEAGWEGPMSC
Trigger: GCATGACATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTTGTTGGGGGTAGACACTGACTGGGCATCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CCA 90 bp AGAGTAGGCGTCTGTATCCCTGCGCACAGCCTCATGGCTATGTTGTaGCTGAATTGTTGGAGCCTTCCCCCAGCCCTGCCACTCAATCAT +
Preference number: 5 (lower is better)
Translates to: RVGVCIPAHSLMAML*LNCWSLPPALPLNH
Trigger: ATGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGACGCCTACTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGCCTGAGAATGATGACTaGGCCAGGGCCCCAATGCCA +
Preference number: 5 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWPENDD*ARAPMP
Trigger: TGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGG...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CCAGCTCCTTGCATCTTCTCTCTTCAGAGTGGGGTGGGCCTCACCTGCCTCTGTTCCTCCATGGAAAGATaGATGCCGTCCCAGGAGAAA +
Preference number: 5 (lower is better)
Translates to: PAPCIFSLQSGVGLTCLCSSMER*MPSQEK
Trigger: TTTCTCCTGGGACGGCATCAATCTTTCCATGGAGGA...ACAGAGGCAGGTGAGGCCCACCCCACTCTGAAGAGAGAAGATGCAAGGAGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 90 bp TGGAGACTGCTGCCATGCAGCGAGCTGGTGCTGTCCATGTTGATCTaGTCAACATCCTTGAGGCCTTTCCAGTCCACGGCAATCACTTCG +
Preference number: 5 (lower is better)
Translates to: WRLLPCSELVLSMLI*STSLRPFQSTAITS
Trigger: CGAAGTGATTGCCGTGGACTGGAAAGGCCTCAAGGATGTTGATCAGATCAACATGGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031891.15
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CAGCACCCTCATAACAATACTGCACTGACTTGCTGTTGCTCCCTGTCCCCATGGGAGGCCATCCATCCATaGGGGCTTGAGCTAGTGCAT +
Preference number: 5 (lower is better)
Translates to: QHPHNNTALTCCCSLSPWEAIHP*GLELVH
Trigger: ATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTC...CCATGGGGACAGGGAGCAACAGCAAGTCAGTGCAGTATTGTTATGAGGGTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TTAGTGTTGTTCCACACAGCCTCTGGCCTTCTCCAACATGGGCTCCTTCCACCATATGTTGTGGCTGAATaGTTGGAGCCTTCCCCCAGC +
Preference number: 5 (lower is better)
Translates to: LVLFHTASGLLQHGLLPPYVVAE*LEPSPS
Trigger: GCTGGGGGAAGGCTCCAACAATTCAGCCACAACATA...TGGTGGAAGGAGCCCATGTTGGAGAAGGCCAGAGGCTGTGTGGAACAACACTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGAGAGGCCATCCATCCATaGGGGCTTGAGCTAGTGCAT +
Preference number: 5 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGEAIHP*GLELVH
Trigger: ATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTC...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGACGAGGCCATCCATCCATaGGGGCTTGAGCTAGTGCAT +
Preference number: 5 (lower is better)
Translates to: CCSLSPWSTPNQRKGGMDEAIHP*GLELVH
Trigger: ATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTC...GTCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCCCTGAGAATGATGACTaGGCCAGGGCCCCAATGCCA +
Preference number: 5 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGPENDD*ARAPMP
Trigger: TGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGG...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCGTTGTGGCTGAATTGTaGGAGCCTTCCCCCAGCCCT +
Preference number: 5 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGVVAEL*EPSPSP
Trigger: AGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAAC...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TATGGACAGGCAAGCTTAGGTATCACCACAGCCACTCCTATAAGGAACACTGGAGTTGTGGCTGAATTGTaGGAGCCTTCCCCCAGCCCT +
Preference number: 5 (lower is better)
Translates to: YGQASLGITTATPIRNTGVVAEL*EPSPSP
Trigger: AGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAAC...TCCAGTGTTCCTTATAGGAGTGGCTGTGGTGATACCTAAGCTTGCCTGTCCATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATATGTTGTGGCTGAATaGTTGGAGCCTTCCCCCAGC +
Preference number: 5 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGYVVAE*LEPSPS
Trigger: GCTGGGGGAAGGCTCCAACAATTCAGCCACAACATA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CTGTTGCTCCCTGTCCCCATGGTCCACACCAAATCAAAGGAAAGGAGGTATGGAGGCTCCTGGGTAGAATaGACACTCATGTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: LLLPVPMVHTKSKERRYGGSWVE*TLMSSP
Trigger: TGGTGAGGACATGAGTGTCAATTCTACCCAGGAGCC...TCCATACCTCCTTTCCTTTGATTTGGTGTGGACCATGGGGACAGGGAGCAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp TTAACACAAGGAAAAGAAGGGAGGTATGTGGGCTGGGGGAGGCAATGGAAGGGATCCTCCATGGAAAGATaGATGCCGTCCCAGGAGAAA +
Preference number: 5 (lower is better)
Translates to: LTQGKEGRYVGWGRQWKGSSMER*MPSQEK
Trigger: TTTCTCCTGGGACGGCATCAATCTTTCCATGGAGGA...TCCCTTCCATTGCCTCCCCCAGCCCACATACCTCCCTTCTTTTCCTTGTGTTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAACCTGAGAATGATGACTaGGCCAGGGCCCCAATGCCA +
Preference number: 5 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQPENDD*ARAPMP
Trigger: TGGCATTGGGGCCCTGGCCAAGTCATCATTCTCAGG...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCTATGTTGTGGCTGAATaGTTGGAGCCTTCCCCCAGC +
Preference number: 5 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGYVVAE*LEPSPS
Trigger: GCTGGGGGAAGGCTCCAACAATTCAGCCACAACATA...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp AACACGGTGACAAGCTTGGGCATCTCCTATCAAAACTCTGCTTATGCCAAAGGCGGCTCCTGGGTAGAATaGACACTCATGTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: NTVTSLGISYQNSAYAKGGSWVE*TLMSSP
Trigger: TGGTGAGGACATGAGTGTCAATTCTACCCAGGAGCC...GCCTTTGGCATAAGCAGAGTTTTGATAGGAGATGCCCAAGCTTGTCACCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS-3UTR CAA 90 bp CCTGCTCGGGTACAAACCCTACTAGGTTTCTTCAGGTCTTTTGTAGTCTTTCAAGGCTCCTGGGTAGAATaGACACTCATGTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: PARVQTLLGFFRSFVVFQGSWVE*TLMSSP
Trigger: TGGTGAGGACATGAGTGTCAATTCTACCCAGGAGCC...TTGAAAGACTACAAAAGACCTGAAGAAACCTAGTAGGGTTTGTACCCGAGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 72 bp GGCGTCTGTATCCCTGCGCACAGCCTCATGGCTATGTaGTGGCTGAATTGTTGGAGCCTTCCCCCAGCCCTG +
Preference number: 6 (lower is better)
Translates to: GVCIPAHSLMAM*WLNCWSLPPAL
Trigger: CAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGACGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 90 bp CTGTATCCCTGCGCACAGCCTCATGGCTATGTTGTGGCTGAATTGTaGGAGCCTTCCCCCAGCCCTGCCACTCAATCATGTGGGCCACCC +
Preference number: 6 (lower is better)
Translates to: LYPCAQPHGYVVAEL*EPSPSPATQSCGPP
Trigger: GGGTGGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 90 bp CGTCTGTATCCCTGCGCACAGCCTCATGGCTATGTTGTGGCTGAATaGTTGGAGCCTTCCCCCAGCCCTGCCACTCAATCATGTGGGCCA +
Preference number: 6 (lower is better)
Translates to: RLYPCAQPHGYVVAE*LEPSPSPATQSCGP
Trigger: TGGCCCACATGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp GTATCCCTGCGCACAGCCTCATGGCTATGTTGTGGCTaGATTGTTGGAGCCTTCCCCCAGCCCTGCCACTCA +
Preference number: 6 (lower is better)
Translates to: VSLRTASWLCCG*IVGAFPQPCHS
Trigger: TGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp CACCTGCTAGGAAACGTGCCTCCTTCTCGCCATCACTaGGGTCAGAGTAGGCGTCTGTATCCCTGCGCACAG +
Preference number: 6 (lower is better)
Translates to: HLLGNVPPSRHH*GQSRRLYPCAQ
Trigger: CTGTGCGCAGGGATACAGACGCCTACTCTGACCTCAGTGATGGCGAGAAGGAGGCACGTTTCCTAGCAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp CCCCAACAAAGGTGGAGGCTCCTGAGCAGAGTATCCTaGAGCAGGTTGGGAAGGCCCCATGTCATGCAGGCT +
Preference number: 6 (lower is better)
Translates to: PQQRWRLLSRVS*SRLGRPHVMQA
Trigger: AGCCTGCATGACATGGGGCCTTCCCAACCTGCTTCAGGATACTCTGCTCAGGAGCCTCCACCTTTGTTGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CCA 72 bp GTCTGTATCCCTGCGCACAGCCTCATGGCTATGTTGTaGCTGAATTGTTGGAGCCTTCCCCCAGCCCTGCCA +
Preference number: 6 (lower is better)
Translates to: VCIPAHSLMAML*LNCWSLPPALP
Trigger: TGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 72 bp CCCTGCGCACAGCCTCATGGCTATGTTGTGGCTGAATaGTTGGAGCCTTCCCCCAGCCCTGCCACTCAATCA +
Preference number: 6 (lower is better)
Translates to: PCAQPHGYVVAE*LEPSPSPATQS
Trigger: TGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 90 bp GTCAGAGTAGGCGTCTGTATCCCTGCGCACAGCCTCATGGCTATGTaGTGGCTGAATTGTTGGAGCCTTCCCCCAGCCCTGCCACTCAAT +
Preference number: 6 (lower is better)
Translates to: VRVGVCIPAHSLMAM*WLNCWSLPPALPLN
Trigger: ATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCAGGGATACAGACGCCTACTCTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp AGGTTGGGAAGGCCCCATGTCATGCAGGCTCGGCTGTaGGTCATCAAATGCAGGGCCAAGATAGGATCCGGT +
Preference number: 6 (lower is better)
Translates to: RLGRPHVMQARL*VIKCRAKIGSG
Trigger: ACCGGATCCTATCTTGGCCCTGCATTTGATGACTCACAGCCGAGCCTGCATGACATGGGGCCTTCCCAACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp AGCAGTGGACATCTCTGGGTCCTCTCGTGGGGAAAGTaGCTCCAGATCCCGGCATCCTGCATCTTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: SSGHLWVLSWGK*LQIPASCIFFL
Trigger: GAGGAAGAAGATGCAGGATGCCGGGATCTGGAGTCACTTTCCCCACGAGAGGACCCAGAGATGTCCACTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS GCA 72 bp GAGTATCCTGAAGCAGGTTGGGAAGGCCCCATGTCATaGAGGCTCGGCTGTGAGTCATCAAATGCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: EYPEAGWEGPMS*RLGCESSNAGP
Trigger: TGGCCCTGCATTTGATGACTCACAGCCGAGCCTGCATGACATGGGGCCTTCCCAACCTGCTTCAGGATACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CCA 72 bp GAGAAATCTGTTCGTGTTTGCTCTGTCGAAGGCCGATaGAGACTGCTGCCATGCAGCGAGCTGGTGCTGTCC +
Preference number: 6 (lower is better)
Translates to: EKSVRVCSVEGR*RLLPCSELVLS
Trigger: GGACAGCACCAGCTCGCTGCATGGCAGCAGTCTCCATCGGCCTTCGACAGAGCAAACACGAACAGATTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS TCA 72 bp CTGCCATGCAGCGAGCTGGTGCTGTCCATGTTGATCTaGTCAACATCCTTGAGGCCTTTCCAGTCCACGGCA +
Preference number: 6 (lower is better)
Translates to: LPCSELVLSMLI*STSLRPFQSTA
Trigger: TGCCGTGGACTGGAAAGGCCTCAAGGATGTTGATCAGATCAACATGGACAGCACCAGCTCGCTGCATGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031891.15
ENSMUST00000143278.8
CDS CAA 72 bp TGCGCACAGCCTCATGGCTATGTTGTGGCTGAATTGTaGGAGCCTTCCCCCAGCCCTGCCACTCAATCATGT +
Preference number: 6 (lower is better)
Translates to: CAQPHGYVVAEL*EPSPSPATQSC
Trigger: ACATGATTGAGTGGCAGGGCTGGGGGAAGGCTCCAACAATTCAGCCACAACATAGCCATGAGGCTGTGCGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 90 bp GACAGTACATCCCCTGTGACACGTAGGAGTGAGGCCATCCATCCATaGGGGCTTGAGCTAGTGCATCCTGACTTTCCATCAGCTCCTGGT +
Preference number: 6 (lower is better)
Translates to: DSTSPVTRRSEAIHP*GLELVHPDFPSAPG
Trigger: ACCAGGAGCTGATGGAAAGTCAGGATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTCACTCCTACGTGTCACAGGGGATGTACTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS GCA 72 bp AAATGCAGGGCCAAGATAGGATCCGGTAGCTGGAGATaGAATGAGGGACTGATCACTTGCTTCCCAGGCGTC +
Preference number: 6 (lower is better)
Translates to: KCRAKIGSGSWR*NEGLITCFPGV
Trigger: GACGCCTGGGAAGCAAGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGATCCTATCTTGGCCCTGCATTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CAA 72 bp TCCCCTGTGACACGTAGGAGTGAGGCCATCCATCCATaGGGGCTTGAGCTAGTGCATCCTGACTTTCCATCA +
Preference number: 6 (lower is better)
Translates to: SPVTRRSEAIHP*GLELVHPDFPS
Trigger: TGATGGAAAGTCAGGATGCACTAGCTCAAGCCCCAATGGATGGATGGCCTCACTCCTACGTGTCACAGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8
CDS CCA 72 bp GTCATCAAATGCAGGGCCAAGATAGGATCCGGTAGCTaGAGATGCAATGAGGGACTGATCACTTGCTTCCCA +
Preference number: 6 (lower is better)
Translates to: VIKCRAKIGSGS*RCNEGLITCFP
Trigger: TGGGAAGCAAGTGATCAGTCCCTCATTGCATCTCCAGCTACCGGATCCTATCTTGGCCCTGCATTTGATGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031891.15
ENSMUST00000095974.4
ENSMUST00000143278.8