RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM124B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043230

Ensembl transcript IDs: ENSMUST00000058748.2

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCCAACACATGCATCTGAGCTGTGTCTCTGAGAAGCTCAGACCCTaGGTTTTCTTTCTCTCCCTTCCAACTGGCCAGCACACTGTCAGA +
Preference number: 1 (lower is better)
Translates to: SQHMHLSCVSEKLRP*VFFLSLPTGQHTVR
Trigger: TCTGACAGTGTGCTGGCCAGTTGGAAGGGAGAGAAAGAAAACCCAGGGTCTGAGCTTCTCAGAGACACAGCTCAGATGCATGTGTTGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR CCA 90 bp TCTTCACTGTCAACTGGATTCAGACACACCATGGAAACCCATCTCTaGGTGTATCTAGAAGGGTGTTTCCAGAAAGATTTAACTGAGGAA +
Preference number: 1 (lower is better)
Translates to: SSLSTGFRHTMETHL*VYLEGCFQKDLTEE
Trigger: TTCCTCAGTTAAATCTTTCTGGAAACACCCTTCTAGATACACCCAGAGATGGGTTTCCATGGTGTGTCTGAATCCAGTTGACAGTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR GCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATGCATCCATCCCCCTCTaGTACCTGACTGTAGAGGAA +
Preference number: 2 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDASIPL*YLTVEE
Trigger: TTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGC...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR TCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTGTGACTTCCCAGCCATaGATGGGGCTGACTCTTAAA +
Preference number: 2 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCVTSQP*MGLTLK
Trigger: TTTAAGAGTCAGCCCCATTCATGGCTGGGAAGTCAC...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR CCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATTATCTTCCCATGAGCTaGAGTCCCAGATTGAGCTTT +
Preference number: 2 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDYLPMS*SPRLSF
Trigger: AAAGCTCAATCTGGGACTCCAGCTCATGGGAAGATA...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR GCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCAACCAGTCACACTCTTaGTTCTGTGACTTCCCAGCC +
Preference number: 2 (lower is better)
Translates to: DKRVEISLSLALILNLAFNQSHS*FCDFPA
Trigger: GGCTGGGAAGTCACAGAAGCAAGAGTGTGACTGGTT...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR CCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTGAGAAGCTCAGACCCTaGGTTTTCTTTCTCTCCCTT +
Preference number: 2 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCEKLRP*VFFLSL
Trigger: AAGGGAGAGAAAGAAAACCCAGGGTCTGAGCTTCTC...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR-3UTR TCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTCCAGAAAGATTTAACTaGGGAAGGAAGACCAACCCT +
Preference number: 2 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCPERFN*GRKTNP
Trigger: AGGGTTGGTCTTCCTTCCTCAGTTAAATCTTTCTGG...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR CAA 90 bp ATGAGAGACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTaGAACCTAGCTTTCTGGCTTCGAGTATTGTTACTAATTAAACAG +
Preference number: 2 (lower is better)
Translates to: MRDKRVEISLSLALI*NLAFWLRVLLLIKQ
Trigger: CTGTTTAATTAGTAACAATACTCGAAGCCAGAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTCTCTCAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR TCA 72 bp ACCAGTCACACTCTTGCTTCTGTGACTTCCCAGCCATaGATGGGGCTGACTCTTAAACCTTTGCTTGCTTTT +
Preference number: 3 (lower is better)
Translates to: TSHTLASVTSQP*MGLTLKPLLAF
Trigger: AAAAGCAAGCAAAGGTTTAAGAGTCAGCCCCATTCATGGCTGGGAAGTCACAGAAGCAAGAGTGTGACTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR CCA 72 bp TCAACTGGATTCAGACACACCATGGAAACCCATCTCTaGGTGTATCTAGAAGGGTGTTTCCAGAAAGATTTA +
Preference number: 3 (lower is better)
Translates to: STGFRHTMETHL*VYLEGCFQKDL
Trigger: TAAATCTTTCTGGAAACACCCTTCTAGATACACCCAGAGATGGGTTTCCATGGTGTGTCTGAATCCAGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR CCA 72 bp TCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCTaGCTTCGAGTATTGTTACTAATTAAACAGGGGAGG +
Preference number: 3 (lower is better)
Translates to: SLSLALILNLAF*LRVLLLIKQGR
Trigger: CCTCCCCTGTTTAATTAGTAACAATACTCGAAGCCAGAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTTGGGTAGGGAAACCCTaGCAGGGTGAACGCCGTAGG +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTWVGKP*QGERRR
Trigger: CCTACGGCGTTCACCCTGGCAGGGTTTCCCTACCCA...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTAATTCACTGGCCTCATaGCCCACACTGGCATCTGGT +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTNSLAS*PTLASG
Trigger: ACCAGATGCCAGTGTGGGGCATGAGGCCAGTGAATT...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTAGCGTGGTGGTTGGCTaGTCTGAAAATCCCTGGGAA +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTSVVVG*SENPWE
Trigger: TTCCCAGGGATTTTCAGAGCAGCCAACCACCACGCT...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTCAGACTGGAGTCCTGTaGATGTGTGTCACCTCTCAA +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTQTGVL*MCVTSQ
Trigger: TTGAGAGGTGACACACATCCACAGGACTCCAGTCTG...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATGACCTCCCCTGTGCATaGTGGGTAGGGAAACCCTGC +
Preference number: 4 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDDLPCA*WVGKPC
Trigger: GCAGGGTTTCCCTACCCAGCATGCACAGGGGAGGTC...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATTGCTTCAGAGAGAGCTaGAGGCTGAAGCCCTCGGTG +
Preference number: 4 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDCFRES*RLKPSV
Trigger: CACCGAGGGCTTCAGCCTGCAGCTCTCTCTGAAGCA...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTATACATTCTAGTAGTTaGTCCAGAGCCTGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTIHSSS*SRACCR
Trigger: TCTGCAGCAGGCTCTGGACCAACTACTAGAATGTAT...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTCAAAACAGACATTCCTaGGAAGCGGGCCCTCCGCGG +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCQNRHS*EAGPPR
Trigger: CCGCGGAGGGCCCGCTTCCCAGGAATGTCTGTTTTG...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTTGCTCTGAAAATCCCTaGGAAATCTGCTCGGAAAAG +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTCSENP*EICSEK
Trigger: CTTTTCCGAGCAGATTTCCCAGGGATTTTCAGAGCA...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTATGATGGGAACATTTTaGGATGACCTTCTTTGCACC +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTMMGTF*DDLLCT
Trigger: GGTGCAAAGAAGGTCATCTCAAAATGTTCCCATCAT...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTGCATCTCATAGAGTCTaGTGGCATCTTCATAGTTAT +
Preference number: 4 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTASHRV*WHLHSY
Trigger: ATAACTATGAAGATGCCATCAGACTCTATGAGATGC...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCGAGAGAGCTGCAGGCTaGAGCCCTCGGTGGCATAGA +
Preference number: 4 (lower is better)
Translates to: DKRVEISLSLALILNLAFERAAG*SPRWHR
Trigger: TCTATGCCACCGAGGGCTTCAGCCTGCAGCTCTCTC...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATGCACCAAAGTCCCTTTaGCTAGGAAGTGACAGAGGG +
Preference number: 4 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDAPKSL*LGSDRG
Trigger: CCCTCTGTCACTTCCTAGTCAAAGGGACTTTGGTGC...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTATTCCCAGGGGCAGCTaGTTCAGAGAGAGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCIPRGS*FRESCR
Trigger: CCTGCAGCTCTCTCTGAAGCAGCTGCCCCTGGGAAT...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTTTTCCCATGAGCCACTaGGTTGTGGAAGCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCFPMSH*VVEAPA
Trigger: CGCTGGAGCTTCCACAACCCAGTGGCTCATGGGAAA...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTTGGTCCAGAGCCTGCTaGAGAAGCAAACCGTTCCCA +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCWSRAC*RSKPFP
Trigger: TGGGAACGGTTTGCTTCTGCAGCAGGCTCTGGACCA...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTGGTGGTTGGCTGCTCTaGAAATCCCTGGGAAATCTG +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCGGWLL*KSLGNL
Trigger: CAGATTTCCCAGGGATTTTCAGAGCAGCCAACCACC...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTCCCTGGGCCTGCAGATaGTGGGAACATTTTGAGATG +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCPWACR*WEHFEM
Trigger: CATCTCAAAATGTTCCCATCATCTGCAGGCCCAGGG...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTAGTTGGTCCAGAGCCTaGTGCAGAAGCAAACCGTTC +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCSWSRA*CRSKPF
Trigger: GAACGGTTTGCTTCTGCAGCAGGCTCTGGACCAACT...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCAGTGCCACAATTCACTaGCCTCATGCCCCACACTGG +
Preference number: 4 (lower is better)
Translates to: DKRVEISLSLALILNLAFSATIH*PHAPHW
Trigger: CCAGTGTGGGGCATGAGGCCAGTGAATTGTGGCACT...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTGCACAGAAGACTCCTTaGGGTCTACTGACATTCCCA +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCAQKTP*GLLTFP
Trigger: TGGGAATGTCAGTAGACCCCAAGGAGTCTTCTGTGC...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCAGCTGCCCAATCTCTTaGACCCTGAACTGCAGCACA +
Preference number: 4 (lower is better)
Translates to: DKRVEISLSLALILNLAFSCPIS*TLNCST
Trigger: TGTGCTGCAGTTCAGGGTTCAAGAGATTGGGCAGCT...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTGTGTCGGCAAGAAGATaGACAGTCAAGGCTAGAGGT +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCVSARR*TVKARG
Trigger: ACCTCTAGCCTTGACTGTGCATCTTCTTGCCGACAC...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCTGTCCCAGGCTTTCCTaGAGGAAGAGCAAAACAGAC +
Preference number: 4 (lower is better)
Translates to: DKRVEISLSLALILNLAFCPRLS*RKSKTD
Trigger: GTCTGTTTTGCTCTTCCTTCAGGAAAGCCTGGGACA...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTCAATCTCTTGAACCCTaGACTGCAGCACAGAAGACT +
Preference number: 4 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCQSLEP*TAAQKT
Trigger: AGTCTTCTGTGCTGCAGTTCAGGGTTCAAGAGATTG...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCCGCTCTTTTGCACAGTaGCGTCTCTCTGTAGAAGCA +
Preference number: 4 (lower is better)
Translates to: DKRVEISLSLALILNLAFRSFAQ*RLSVEA
Trigger: TGCTTCTACAGAGAGACGCCACTGTGCAAAAGAGCG...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTGGAAGTGACAGAGGGTaGAGTCTATCCTTAAAGACT +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCGSDRG*SLSLKT
Trigger: AGTCTTTAAGGATAGACTCCACCCTCTGTCACTTCC...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR TCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTGGGAACATTTTGAGATaGCCTTCTTTGCACCAAAGT +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCGNILR*PSLHQS
Trigger: ACTTTGGTGCAAAGAAGGTCATCTCAAAATGTTCCC...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR GCA 90 bp GATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCTTCACTGTGCAGCAGAATCTTATTaGCATCATAGTCCTGAGTCT +
Preference number: 4 (lower is better)
Translates to: DLSQRSKKLNVRRSDLHCAAESY*HHSPES
Trigger: AGACTCAGGACTATGATGGCAATAAGATTCTGCTGC...ACAGTGAAGATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CCA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATTGTAGAATTCCTGATTaGCAGGGAGATAAGAACAAG +
Preference number: 4 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDCRIPD*QGDKNK
Trigger: CTTGTTCTTATCTCCCTGCCAATCAGGAATTCTACA...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
3UTR CAA 72 bp AAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTaGAACCTAGCTTTCTGGCTTCGAGTATTGTTACTA +
Preference number: 4 (lower is better)
Translates to: KRVEISLSLALI*NLAFWLRVLLL
Trigger: TAGTAACAATACTCGAAGCCAGAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp TGGGAAGCGGGCCCTCCGCGGGTGGTACTTTTCATGGTAGTTCACTaGCCTGGCACGTTCAGACACCAGGAAGAGACGCACCTCTGGGCA +
Preference number: 5 (lower is better)
Translates to: WEAGPPRVVLFMVVH*PGTFRHQEETHLWA
Trigger: TGCCCAGAGGTGCGTCTCTTCCTGGTGTCTGAACGTGCCAGGCCAGTGAACTACCATGAAAAGTACCACCCGCGGAGGGCCCGCTTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp AGCGGGCCCTCCGCGGGTGGTACTTTTCATGGTAGTTCACTGGCCTaGCACGTTCAGACACCAGGAAGAGACGCACCTCTGGGCAGATAC +
Preference number: 5 (lower is better)
Translates to: SGPSAGGTFHGSSLA*HVQTPGRDAPLGRY
Trigger: GTATCTGCCCAGAGGTGCGTCTCTTCCTGGTGTCTGAACGTGCCAGGCCAGTGAACTACCATGAAAAGTACCACCCGCGGAGGGCCCGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp GACACCAGGAAGAGACGCACCTCTGGGCAGATACATTCTAGTAGTTaGTCCAGAGCCTGCTGCAGAAGCAAACCGTTCCCAGTGTCGGCA +
Preference number: 5 (lower is better)
Translates to: DTRKRRTSGQIHSSS*SRACCRSKPFPVSA
Trigger: TGCCGACACTGGGAACGGTTTGCTTCTGCAGCAGGCTCTGGACCAACTACTAGAATGTATCTGCCCAGAGGTGCGTCTCTTCCTGGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTTCCTCCTCCGGCTCCTaGGCTCCAAGGTTCTCTGTG +
Preference number: 5 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTSSSGS*APRFSV
Trigger: CACAGAGAACCTTGGAGCCAAGGAGCCGGAGGAGGA...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 90 bp GAATCTTATTGCCATCATAGTCCTGAGTCTGCCACCTCGCGCTGCTaGTGGGAACACACGGATTGGGTAGAAGAGGCACCAGCTGCCCAA +
Preference number: 5 (lower is better)
Translates to: ESYCHHSPESATSRC*WEHTDWVEEAPAAQ
Trigger: TTGGGCAGCTGGTGCCTCTTCTACCCAATCCGTGTGTTCCCATCAGCAGCGCGAGGTGGCAGACTCAGGACTATGATGGCAATAAGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 90 bp ACGGATTGGGTAGAAGAGGCACCAGCTGCCCAATCTCTTGAACCCTaGACTGCAGCACAGAAGACTCCTTGGGGTCTACTGACATTCCCA +
Preference number: 5 (lower is better)
Translates to: TDWVEEAPAAQSLEP*TAAQKTPWGLLTFP
Trigger: TGGGAATGTCAGTAGACCCCAAGGAGTCTTCTGTGCTGCAGTTCAGGGTTCAAGAGATTGGGCAGCTGGTGCCTCTTCTACCCAATCCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS GCA 90 bp CAGTTACCTCTAAGGAAGAGCCTGACAAGCAGCGTGGTGGTTGGCTaGTCTGAAAATCCCTGGGAAATCTGCTCGGAAAAGATCGCCTGG +
Preference number: 5 (lower is better)
Translates to: QLPLRKSLTSSVVVG*SENPWEICSEKIAW
Trigger: CCAGGCGATCTTTTCCGAGCAGATTTCCCAGGGATTTTCAGAGCAGCCAACCACCACGCTGCTTGTCAGGCTCTTCCTTAGAGGTAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp CCTGAGGATATCAGTGCCACAATTCACTGGCCTCATGCCCCACACTaGCATCTGGTTGTGCAGACTGTAGAATTCCTGATTGGCAGGGAG +
Preference number: 5 (lower is better)
Translates to: PEDISATIHWPHAPH*HLVVQTVEFLIGRE
Trigger: CTCCCTGCCAATCAGGAATTCTACAGTCTGCACAACCAGATGCCAGTGTGGGGCATGAGGCCAGTGAATTGTGGCACTGATATCCTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTCAGCTGCCCAATCTCTaGAACCCTGAACTGCAGCAC +
Preference number: 5 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTQLPNL*NPELQH
Trigger: GTGCTGCAGTTCAGGGTTCAAGAGATTGGGCAGCTG...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp ACTGCAGTACAGAGTCACCCTGAGGATATCAGTGCCACAATTCACTaGCCTCATGCCCCACACTGGCATCTGGTTGTGCAGACTGTAGAA +
Preference number: 5 (lower is better)
Translates to: TAVQSHPEDISATIH*PHAPHWHLVVQTVE
Trigger: TTCTACAGTCTGCACAACCAGATGCCAGTGTGGGGCATGAGGCCAGTGAATTGTGGCACTGATATCCTCAGGGTGACTCTGTACTGCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp AGCATCCATCCCCCTCTGCTACCTGACTGTAGAGGAAACGTAACCAGTCACACTTCGAAACAACCGTTCTaGTCCCAGGCTTTCCTGAAG +
Preference number: 5 (lower is better)
Translates to: SIHPPLLPDCRGNVTSHTSKQPF*SQAFLK
Trigger: CTTCAGGAAAGCCTGGGACAAGAACGGTTGTTTCGA...AGTGTGACTGGTTACGTTTCCTCTACAGTCAGGTAGCAGAGGGGGATGGATGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 90 bp GCAGCCGTTCAAGAAGGGATGCTCACCATTTTTAATGCCAACTCCTaGCTTCGGATGGACCTGCAGCAGAATCTTATTGCCATCATAGTC +
Preference number: 5 (lower is better)
Translates to: AAVQEGMLTIFNANS*LRMDLQQNLIAIIV
Trigger: GACTATGATGGCAATAAGATTCTGCTGCAGGTCCATCCGAAGCCAGGAGTTGGCATTAAAAATGGTGAGCATCCCTTCTTGAACGGCTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATCGCCTGGGTTCGGAATaGATGATGGTGAAGCCAGTG +
Preference number: 5 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDRLGSE*MMVKPV
Trigger: CACTGGCTTCACCATCATCAATTCCGAACCCAGGCG...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp GAGAGCCTAGATCTCTCTCAAAGGAGCAAGAAACTAAATGTTCGTAGATCCGATAGCACAGAAGACTCCTaGGGGTCTACTGACATTCCC +
Preference number: 5 (lower is better)
Translates to: ESLDLSQRSKKLNVRRSDSTEDS*GSTDIP
Trigger: GGGAATGTCAGTAGACCCCAAGGAGTCTTCTGTGCT...ATCGGATCTACGAACATTTAGTTTCTTGCTCCTTTGAGAGAGATCTAGGCTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 90 bp TCTTTTGCACAGTGGCGTCTCTCTGTAGAAGCATCTCATAGAGTCTaGTGGCATCTTCATAGTTATCAAAACTGCAGTACAGAGTCACCC +
Preference number: 5 (lower is better)
Translates to: SFAQWRLSVEASHRV*WHLHSYQNCSTESP
Trigger: GGGTGACTCTGTACTGCAGTTTTGATAACTATGAAGATGCCATCAGACTCTATGAGATGCTTCTACAGAGAGACGCCACTGTGCAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp GACAAAAGAGTAGAAATATCTCTGAGTCTAGCACTCATTTTGAACCTAGCTTTCATGGGAACACACGGATaGGGTAGAAGAGGCACCAGC +
Preference number: 5 (lower is better)
Translates to: DKRVEISLSLALILNLAFMGTHG*GRRGTS
Trigger: GCTGGTGCCTCTTCTACCCAATCCGTGTGTTCCCAT...GAAAGCTAGGTTCAAAATGAGTGCTAGACTCAGAGATATTTCTACTCTTTTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS-3UTR CAA 90 bp ATGCTCAGTGGAGATACAGAATTTTCTAATCATCCCTGTCTTCCTTGGTTTTGTAGCCAGTGTCAACATTaGTCTCCGCCTCGAGCTTCT +
Preference number: 5 (lower is better)
Translates to: MLSGDTEFSNHPCLPWFCSQCQH*SPPRAS
Trigger: AGAAGCTCGAGGCGGAGACAAATGTTGACACTGGCT...ACAAAACCAAGGAAGACAGGGATGATTAGAAAATTCTGTATCTCCACTGAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS GCA 72 bp CAAGACCTCCCCTGTGCATGCTGGGTAGGGAAACCCTaGCAGGGTGAACGCCGTAGGAAGTCCAAGACTCGA +
Preference number: 6 (lower is better)
Translates to: QDLPCACWVGKP*QGERRRKSKTR
Trigger: TCGAGTCTTGGACTTCCTACGGCGTTCACCCTGGCAGGGTTTCCCTACCCAGCATGCACAGGGGAGGTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp GGCCCTCCGCGGGTGGTACTTTTCATGGTAGTTCACTaGCCTGGCACGTTCAGACACCAGGAAGAGACGCAC +
Preference number: 6 (lower is better)
Translates to: GPPRVVLFMVVH*PGTFRHQEETH
Trigger: GTGCGTCTCTTCCTGGTGTCTGAACGTGCCAGGCCAGTGAACTACCATGAAAAGTACCACCCGCGGAGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp TCCTCCTCCGGCTCCTTGGCTCCAAGGTTCTCTGTGTaGAGACGGAGTTCAGACTGGAGTCCTGTGGATGTG +
Preference number: 6 (lower is better)
Translates to: SSSGSLAPRFSV*RRSSDWSPVDV
Trigger: CACATCCACAGGACTCCAGTCTGAACTCCGTCTCCACACAGAGAACCTTGGAGCCAAGGAGCCGGAGGAGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS GCA 72 bp CTCCTGGCTTCGGATGGACCTGCAGCAGAATCTTATTaGCATCATAGTCCTGAGTCTGCCACCTCGCGCTGC +
Preference number: 6 (lower is better)
Translates to: LLASDGPAAESY*HHSPESATSRC
Trigger: GCAGCGCGAGGTGGCAGACTCAGGACTATGATGGCAATAAGATTCTGCTGCAGGTCCATCCGAAGCCAGGAG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp TCCGCGGGTGGTACTTTTCATGGTAGTTCACTGGCCTaGCACGTTCAGACACCAGGAAGAGACGCACCTCTG +
Preference number: 6 (lower is better)
Translates to: SAGGTFHGSSLA*HVQTPGRDAPL
Trigger: CAGAGGTGCGTCTCTTCCTGGTGTCTGAACGTGCCAGGCCAGTGAACTACCATGAAAAGTACCACCCGCGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp CAGAGTCACCCTGAGGATATCAGTGCCACAATTCACTaGCCTCATGCCCCACACTGGCATCTGGTTGTGCAG +
Preference number: 6 (lower is better)
Translates to: QSHPEDISATIH*PHAPHWHLVVQ
Trigger: CTGCACAACCAGATGCCAGTGTGGGGCATGAGGCCAGTGAATTGTGGCACTGATATCCTCAGGGTGACTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp ACAAGCAGCGTGGTGGTTGGCTGCTCTGAAAATCCCTaGGAAATCTGCTCGGAAAAGATCGCCTGGGTTCGG +
Preference number: 6 (lower is better)
Translates to: TSSVVVGCSENP*EICSEKIAWVR
Trigger: CCGAACCCAGGCGATCTTTTCCGAGCAGATTTCCCAGGGATTTTCAGAGCAGCCAACCACCACGCTGCTTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp GTAGAAGAGGCACCAGCTGCCCAATCTCTTGAACCCTaGACTGCAGCACAGAAGACTCCTTGGGGTCTACTG +
Preference number: 6 (lower is better)
Translates to: VEEAPAAQSLEP*TAAQKTPWGLL
Trigger: CAGTAGACCCCAAGGAGTCTTCTGTGCTGCAGTTCAGGGTTCAAGAGATTGGGCAGCTGGTGCCTCTTCTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp GAAGAGCCTGACAAGCAGCGTGGTGGTTGGCTGCTCTaGAAATCCCTGGGAAATCTGCTCGGAAAAGATCGC +
Preference number: 6 (lower is better)
Translates to: EEPDKQRGGWLL*KSLGNLLGKDR
Trigger: GCGATCTTTTCCGAGCAGATTTCCCAGGGATTTTCAGAGCAGCCAACCACCACGCTGCTTGTCAGGCTCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS GCA 72 bp CTAAGGAAGAGCCTGACAAGCAGCGTGGTGGTTGGCTaGTCTGAAAATCCCTGGGAAATCTGCTCGGAAAAG +
Preference number: 6 (lower is better)
Translates to: LRKSLTSSVVVG*SENPWEICSEK
Trigger: CTTTTCCGAGCAGATTTCCCAGGGATTTTCAGAGCAGCCAACCACCACGCTGCTTGTCAGGCTCTTCCTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp AAGAGACGCACCTCTGGGCAGATACATTCTAGTAGTTaGTCCAGAGCCTGCTGCAGAAGCAAACCGTTCCCA +
Preference number: 6 (lower is better)
Translates to: KRRTSGQIHSSS*SRACCRSKPFP
Trigger: TGGGAACGGTTTGCTTCTGCAGCAGGCTCTGGACCAACTACTAGAATGTATCTGCCCAGAGGTGCGTCTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CAA 90 bp AAATCCCTGGGAAATCTGCTCGGAAAAGATCGCCTGGGTTCGGAATaGATGATGGTGAAGCCAGTGTCAACATTTGTCTCCGCCTCGAGC +
Preference number: 6 (lower is better)
Translates to: KSLGNLLGKDRLGSE*MMVKPVSTFVSASS
Trigger: GCTCGAGGCGGAGACAAATGTTGACACTGGCTTCACCATCATCAATTCCGAACCCAGGCGATCTTTTCCGAGCAGATTTCCCAGGGATTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS GCA 72 bp TGCAGAAGCAAACCGTTCCCAGTGTCGGCAAGAAGATaGACAGTCAAGGCTAGAGGTTCCTGTATCTCATCC +
Preference number: 6 (lower is better)
Translates to: CRSKPFPVSARR*TVKARGSCISS
Trigger: GGATGAGATACAGGAACCTCTAGCCTTGACTGTGCATCTTCTTGCCGACACTGGGAACGGTTTGCTTCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp CTGGCATCTGGTTGTGCAGACTGTAGAATTCCTGATTaGCAGGGAGATAAGAACAAGACCTCCCCTGTGCAT +
Preference number: 6 (lower is better)
Translates to: LASGCADCRIPD*QGDKNKTSPVH
Trigger: ATGCACAGGGGAGGTCTTGTTCTTATCTCCCTGCCAATCAGGAATTCTACAGTCTGCACAACCAGATGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp CTCTTCACCCTGGGCCTGCAGATGATGGGAACATTTTaGGATGACCTTCTTTGCACCAAAGTCCCTTTGACT +
Preference number: 6 (lower is better)
Translates to: LFTLGLQMMGTF*DDLLCTKVPLT
Trigger: AGTCAAAGGGACTTTGGTGCAAAGAAGGTCATCTCAAAATGTTCCCATCATCTGCAGGCCCAGGGTGAAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp CAAGAAGGGATGCTCACCATTTTTAATGCCAACTCCTaGCTTCGGATGGACCTGCAGCAGAATCTTATTGCC +
Preference number: 6 (lower is better)
Translates to: QEGMLTIFNANS*LRMDLQQNLIA
Trigger: GGCAATAAGATTCTGCTGCAGGTCCATCCGAAGCCAGGAGTTGGCATTAAAAATGGTGAGCATCCCTTCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CAA 72 bp GGAAATCTGCTCGGAAAAGATCGCCTGGGTTCGGAATaGATGATGGTGAAGCCAGTGTCAACATTTGTCTCC +
Preference number: 6 (lower is better)
Translates to: GNLLGKDRLGSE*MMVKPVSTFVS
Trigger: GGAGACAAATGTTGACACTGGCTTCACCATCATCAATTCCGAACCCAGGCGATCTTTTCCGAGCAGATTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS CCA 72 bp AGTGACAGAGGGTGGAGTCTATCCTTAAAGACTCCTTaGTTTGGGGAAACAGTTACCTCTAAGGAAGAGCCT +
Preference number: 6 (lower is better)
Translates to: SDRGWSLSLKTP*FGETVTSKEEP
Trigger: AGGCTCTTCCTTAGAGGTAACTGTTTCCCCAAACCAAGGAGTCTTTAAGGATAGACTCCACCCTCTGTCACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp CTTCATAGTTATCAAAACTGCAGTACAGAGTCACCCTaGGGATATCAGTGCCACAATTCACTGGCCTCATGC +
Preference number: 6 (lower is better)
Translates to: LHSYQNCSTESP*GYQCHNSLASC
Trigger: GCATGAGGCCAGTGAATTGTGGCACTGATATCCTCAGGGTGACTCTGTACTGCAGTTTTGATAACTATGAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp CATTTTGAGATGACCTTCTTTGCACCAAAGTCCCTTTaGCTAGGAAGTGACAGAGGGTGGAGTCTATCCTTA +
Preference number: 6 (lower is better)
Translates to: HFEMTFFAPKSL*LGSDRGWSLSL
Trigger: TAAGGATAGACTCCACCCTCTGTCACTTCCTAGTCAAAGGGACTTTGGTGCAAAGAAGGTCATCTCAAAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2
CDS TCA 72 bp CAGTGGCGTCTCTCTGTAGAAGCATCTCATAGAGTCTaGTGGCATCTTCATAGTTATCAAAACTGCAGTACA +
Preference number: 6 (lower is better)
Translates to: QWRLSVEASHRV*WHLHSYQNCST
Trigger: TGTACTGCAGTTTTGATAACTATGAAGATGCCATCAGACTCTATGAGATGCTTCTACAGAGAGACGCCACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058748.2