RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM110D (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050105

Ensembl transcript IDs: ENSMUST00000060050.6

Found 26 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp CCCGGAGCCGGGCGGCGGCGACGTTGCGACCTGAGGGCCGTGCTCTaGGCCCCAGCTCTGCGGAGAGAAGCGCTCGGCGCCCAGCACCTC +
Preference number: 5 (lower is better)
Translates to: PGAGRRRRCDLRAVL*APALRREALGAQHL
Trigger: GAGGTGCTGGGCGCCGAGCGCTTCTCTCCGCAGAGCTGGGGCGCAGAGCACGGCCCTCAGGTCGCAACGTCGCCGCCGCCCGGCTCCGGG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp CACAGTCCGGGCTACCCGCGTCCCTGTCGCTGGATGTCCAATCGCTaGTGTCCCCGGAGCCGGGCGGCGGCGACGTTGCGACCTGAGGGC +
Preference number: 5 (lower is better)
Translates to: HSPGYPRPCRWMSNR*CPRSRAAATLRPEG
Trigger: GCCCTCAGGTCGCAACGTCGCCGCCGCCCGGCTCCGGGGACACCAGCGATTGGACATCCAGCGACAGGGACGCGGGTAGCCCGGACTGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS TCA 90 bp CGGCGCCCAGCACCTCCACCAGCGCGCGCTCCAAGCCGCAGTAGTTaGAGAATCGCTCTTTCTCCGACAGTGGCAGCGAGCACGTGGGAC +
Preference number: 5 (lower is better)
Translates to: RRPAPPPARAPSRSS*RIALSPTVAASTWD
Trigger: GTCCCACGTGCTCGCTGCCACTGTCGGAGAAAGAGCGATTCTTCAACTACTGCGGCTTGGAGCGCGCGCTGGTGGAGGTGCTGGGCGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS TCA 90 bp GGGTGTGGTGTCAGCGGTCCTGGTCCCCCGCGCAGGGCTGGCTCCTaGCGACGTACAATCACCTGGTGCGTCTTGACGTACTTGGCTTTG +
Preference number: 5 (lower is better)
Translates to: GCGVSGPGPPRRAGS*RRTITWCVLTYLAL
Trigger: CAAAGCCAAGTACGTCAAGACGCACCAGGTGATTGTACGTCGTCAGGAGCCAGCCCTGCGCGGGGGACCAGGACCGCTGACACCACACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS GCA 90 bp GAATCGCTCTTTCTCCGACAGTGGCAGCGAGCACGTGGGACACACTaGGCGCTTTCCTGTCGCCTCTGGTGTATCCGGGGACCCAGCCCA +
Preference number: 5 (lower is better)
Translates to: ESLFLRQWQRARGTH*ALSCRLWCIRGPSP
Trigger: TGGGCTGGGTCCCCGGATACACCAGAGGCGACAGGAAAGCGCGCAGTGTGTCCCACGTGCTCGCTGCCACTGTCGGAGAAAGAGCGATTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp CTTGCAGTCCCTCTTCTGGCGGTAAAAGATAAGGGAGTCAGGTCTTaGCTGTCGCCTGCCGCTACCCCGGCGGGCAGGCCCAGGCGTTCT +
Preference number: 5 (lower is better)
Translates to: LAVPLLAVKDKGVRS*LSPAATPAGRPRRS
Trigger: AGAACGCCTGGGCCTGCCCGCCGGGGTAGCGGCAGGCGACAGCCAAGACCTGACTCCCTTATCTTTTACCGCCAGAAGAGGGACTGCAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp GCAGCGTCCCGGGTGGCACCCAGGAAAAGGCGTCGTACTAGCCCCTaGCCCTTGGCGTTCTCTTTGTTCACCGAAGCCTTGCAGTCCCTC +
Preference number: 5 (lower is better)
Translates to: AASRVAPRKRRRTSP*PLAFSLFTEALQSL
Trigger: GAGGGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTGCCACCCGGGACGCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp ATTGCAGGGGTGTGGTGTCAGCGGTCCTGGTCCCCCGCGCAGGGCTaGCTCCTGACGACGTACAATCACCTGGTGCGTCTTGACGTACTT +
Preference number: 5 (lower is better)
Translates to: IAGVWCQRSWSPAQG*LLTTYNHLVRLDVL
Trigger: AAGTACGTCAAGACGCACCAGGTGATTGTACGTCGTCAGGAGCCAGCCCTGCGCGGGGGACCAGGACCGCTGACACCACACCCCTGCAAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp CCCGGGTGGCACCCAGGAAAAGGCGTCGTACTAGCCCCTGGCCCTTaGCGTTCTCTTTGTTCACCGAAGCCTTGCAGTCCCTCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: PGWHPGKGVVLAPGP*RSLCSPKPCSPSSG
Trigger: GCCAGAAGAGGGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTGCCACCCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 90 bp GCGCTCCAAGCCGCAGTAGTTGAAGAATCGCTCTTTCTCCGACAGTaGCAGCGAGCACGTGGGACACACTGCGCGCTTTCCTGTCGCCTC +
Preference number: 5 (lower is better)
Translates to: ALQAAVVEESLFLRQ*QRARGTHCALSCRL
Trigger: GAGGCGACAGGAAAGCGCGCAGTGTGTCCCACGTGCTCGCTGCCACTGTCGGAGAAAGAGCGATTCTTCAACTACTGCGGCTTGGAGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS GCA 72 bp GGGCGGCGGCGACGTTGCGACCTGAGGGCCGTGCTCTaGGCCCCAGCTCTGCGGAGAGAAGCGCTCGGCGCC +
Preference number: 6 (lower is better)
Translates to: GRRRRCDLRAVL*APALRREALGA
Trigger: GGCGCCGAGCGCTTCTCTCCGCAGAGCTGGGGCGCAGAGCACGGCCCTCAGGTCGCAACGTCGCCGCCGCCC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS GCA 72 bp ATCGCTGGTGTCCCCGGAGCCGGGCGGCGGCGACGTTaGGACCTGAGGGCCGTGCTCTGCGCCCCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: IAGVPGAGRRRR*DLRAVLCAPAL
Trigger: CAGAGCTGGGGCGCAGAGCACGGCCCTCAGGTCGCAACGTCGCCGCCGCCCGGCTCCGGGGACACCAGCGAT
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp GGCTACCCGCGTCCCTGTCGCTGGATGTCCAATCGCTaGTGTCCCCGGAGCCGGGCGGCGGCGACGTTGCGA +
Preference number: 6 (lower is better)
Translates to: GYPRPCRWMSNR*CPRSRAAATLR
Trigger: TCGCAACGTCGCCGCCGCCCGGCTCCGGGGACACCAGCGATTGGACATCCAGCGACAGGGACGCGGGTAGCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp CACACCTCAGACTCGCGCGGCGGGGCGCGTGCGCGCTaGCAGCCGTACAACCACTGGATGACGCGCGCGTTG +
Preference number: 6 (lower is better)
Translates to: HTSDSRGGARAR*QPYNHWMTRAL
Trigger: CAACGCGCGCGTCATCCAGTGGTTGTACGGCTGCCAGCGCGCACGCGCCCCGCCGCGCGAGTCTGAGGTGTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp GCACGTGGGACACACTGCGCGCTTTCCTGTCGCCTCTaGTGTATCCGGGGACCCAGCCCACCCCGCGGGAGC +
Preference number: 6 (lower is better)
Translates to: ARGTHCALSCRL*CIRGPSPPRGS
Trigger: GCTCCCGCGGGGTGGGCTGGGTCCCCGGATACACCAGAGGCGACAGGAAAGCGCGCAGTGTGTCCCACGTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS TCA 72 bp GTCAGCGGTCCTGGTCCCCCGCGCAGGGCTGGCTCCTaGCGACGTACAATCACCTGGTGCGTCTTGACGTAC +
Preference number: 6 (lower is better)
Translates to: VSGPGPPRRAGS*RRTITWCVLTY
Trigger: GTACGTCAAGACGCACCAGGTGATTGTACGTCGTCAGGAGCCAGCCCTGCGCGGGGGACCAGGACCGCTGAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp CCTCTTCTGGCGGTAAAAGATAAGGGAGTCAGGTCTTaGCTGTCGCCTGCCGCTACCCCGGCGGGCAGGCCC +
Preference number: 6 (lower is better)
Translates to: PLLAVKDKGVRS*LSPAATPAGRP
Trigger: GGGCCTGCCCGCCGGGGTAGCGGCAGGCGACAGCCAAGACCTGACTCCCTTATCTTTTACCGCCAGAAGAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS TCA 72 bp GCACCTCCACCAGCGCGCGCTCCAAGCCGCAGTAGTTaGAGAATCGCTCTTTCTCCGACAGTGGCAGCGAGC +
Preference number: 6 (lower is better)
Translates to: APPPARAPSRSS*RIALSPTVAAS
Trigger: GCTCGCTGCCACTGTCGGAGAAAGAGCGATTCTTCAACTACTGCGGCTTGGAGCGCGCGCTGGTGGAGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS GCA 72 bp TTTCTCCGACAGTGGCAGCGAGCACGTGGGACACACTaGGCGCTTTCCTGTCGCCTCTGGTGTATCCGGGGA +
Preference number: 6 (lower is better)
Translates to: FLRQWQRARGTH*ALSCRLWCIRG
Trigger: TCCCCGGATACACCAGAGGCGACAGGAAAGCGCGCAGTGTGTCCCACGTGCTCGCTGCCACTGTCGGAGAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CAA 90 bp TCCCGGGTGGCACCCAGGAAAAGGCGTCGTACTAGCCCCTGGCCCTaGGCGTTCTCTTTGTTCACCGAAGCCTTGCAGTCCCTCTTCTGG +
Preference number: 6 (lower is better)
Translates to: SRVAPRKRRRTSPWP*AFSLFTEALQSLFW
Trigger: CCAGAAGAGGGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTGCCACCCGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp CGGGTGGCACCCAGGAAAAGGCGTCGTACTAGCCCCTaGCCCTTGGCGTTCTCTTTGTTCACCGAAGCCTTG +
Preference number: 6 (lower is better)
Translates to: RVAPRKRRRTSP*PLAFSLFTEAL
Trigger: CAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTGCCACCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp AGAATCGCTCTTTCTCCGACAGTGGCAGCGAGCACGTaGGACACACTGCGCGCTTTCCTGTCGCCTCTGGTG +
Preference number: 6 (lower is better)
Translates to: RIALSPTVAAST*DTLRAFLSPLV
Trigger: CACCAGAGGCGACAGGAAAGCGCGCAGTGTGTCCCACGTGCTCGCTGCCACTGTCGGAGAAAGAGCGATTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CAA 72 bp AGGCGTCGTACTAGCCCCTGGCCCTTGGCGTTCTCTTaGTTCACCGAAGCCTTGCAGTCCCTCTTCTGGCGG +
Preference number: 6 (lower is better)
Translates to: RRRTSPWPLAFS*FTEALQSLFWR
Trigger: CCGCCAGAAGAGGGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp CACCCAGGAAAAGGCGTCGTACTAGCCCCTGGCCCTTaGCGTTCTCTTTGTTCACCGAAGCCTTGCAGTCCC +
Preference number: 6 (lower is better)
Translates to: HPGKGVVLAPGP*RSLCSPKPCSP
Trigger: GGGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CCA 72 bp GCCGCAGTAGTTGAAGAATCGCTCTTTCTCCGACAGTaGCAGCGAGCACGTGGGACACACTGCGCGCTTTCC +
Preference number: 6 (lower is better)
Translates to: AAVVEESLFLRQ*QRARGTHCALS
Trigger: GGAAAGCGCGCAGTGTGTCCCACGTGCTCGCTGCCACTGTCGGAGAAAGAGCGATTCTTCAACTACTGCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6
CDS CAA 72 bp GCACCCAGGAAAAGGCGTCGTACTAGCCCCTGGCCCTaGGCGTTCTCTTTGTTCACCGAAGCCTTGCAGTCC +
Preference number: 6 (lower is better)
Translates to: APRKRRRTSPWP*AFSLFTEALQS
Trigger: GGACTGCAAGGCTTCGGTGAACAAAGAGAACGCCAAGGGCCAGGGGCTAGTACGACGCCTTTTCCTGGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060050.6