RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAM110C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036136

Ensembl transcript IDs: ENSMUST00000041133.10

Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCTGAAAATATACTCCAGCAGCTGCTGTTTCTTCAGCCGTTCCTCTaGGACACCCTCTTGCAAGGAGAACGCTCCGAGTGGTCTCTAATA +
Preference number: 1 (lower is better)
Translates to: PENILQQLLFLQPFL*DTLLQGERSEWSLI
Trigger: TATTAGAGACCACTCGGAGCGTTCTCCTTGCAAGAGGGTGTCTCAGAGGAACGGCTGAAGAAACAGCAGCTGCTGGAGTATATTTTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR TCA 90 bp GCAATTCCACTGTATGTGAAGTGGAACCAGACCTCAGGCATGTGGTaGGCCAGTTTTTATCCCCTTTATAAGGTAAGAAGGAGGGTGTTA +
Preference number: 1 (lower is better)
Translates to: AIPLYVKWNQTSGMW*ASFYPLYKVRRRVL
Trigger: TAACACCCTCCTTCTTACCTTATAAAGGGGATAAAAACTGGCTCACCACATGCCTGAGGTCTGGTTCCACTTCACATACAGTGGAATTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR TCA 90 bp AGAGGCAGTCTTTGCTTCAAAACATATCCTCTGCAGACAATGGGTTaGTGCCAAATGCAGGCAATTCCACTGTATGTGAAGTGGAACCAG +
Preference number: 1 (lower is better)
Translates to: RGSLCFKTYPLQTMG*CQMQAIPLYVKWNQ
Trigger: CTGGTTCCACTTCACATACAGTGGAATTGCCTGCATTTGGCATCAACCCATTGTCTGCAGAGGATATGTTTTGAAGCAAAGACTGCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR-3UTR CCA 90 bp TTGCTTCAAAACATATCCTCTGCAGACAATGGGTTGATGCCAAATGCAGGCAATGCAACTCTGTATTGTTaGAATACACCAAACACATGG +
Preference number: 2 (lower is better)
Translates to: LLQNISSADNGLMPNAGNATLYC*NTPNTW
Trigger: CCATGTGTTTGGTGTATTCCAACAATACAGAGTTGC...ATTGCCTGCATTTGGCATCAACCCATTGTCTGCAGAGGATATGTTTTGAAGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR-3UTR CCA 90 bp TGGCATAAATCAGTTGAAAGGAGAATAACATTGCATCCATGCTTGATTCCATACAATACACCAAACACATaGCTCTGGAGTTTCAGACGC +
Preference number: 2 (lower is better)
Translates to: WHKSVERRITLHPCLIPYNTPNT*LWSFRR
Trigger: GCGTCTGAAACTCCAGAGCCATGTGTTTGGTGTATT...GTATGGAATCAAGCATGGATGCAATGTTATTCTCCTTTCAACTGATTTATGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR GCA 72 bp CTTGCAAGGAGAACGCTCCGAGTGGTCTCTAATATCTaGCCTCCCACCTTCCCCACAGCACGCCATCATGGC +
Preference number: 3 (lower is better)
Translates to: LARRTLRVVSNI*PPTFPTARHHG
Trigger: GCCATGATGGCGTGCTGTGGGGAAGGTGGGAGGGCAGATATTAGAGACCACTCGGAGCGTTCTCCTTGCAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR TCA 72 bp ATACTCCAGCAGCTGCTGTTTCTTCAGCCGTTCCTCTaGGACACCCTCTTGCAAGGAGAACGCTCCGAGTGG +
Preference number: 3 (lower is better)
Translates to: ILQQLLFLQPFL*DTLLQGERSEW
Trigger: CCACTCGGAGCGTTCTCCTTGCAAGAGGGTGTCTCAGAGGAACGGCTGAAGAAACAGCAGCTGCTGGAGTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR CCA 72 bp ACACATGGCTCTGGAGTTTCAGACGCCTACAATTTATaGGTCTGTTCATCACCGGGGAAGTTTGCTTCCTGG +
Preference number: 3 (lower is better)
Translates to: THGSGVSDAYNL*VCSSPGKFASW
Trigger: CCAGGAAGCAAACTTCCCCGGTGATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAGAGCCATGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR TCA 72 bp CTGTATGTGAAGTGGAACCAGACCTCAGGCATGTGGTaGGCCAGTTTTTATCCCCTTTATAAGGTAAGAAGG +
Preference number: 3 (lower is better)
Translates to: LYVKWNQTSGMW*ASFYPLYKVRR
Trigger: CCTTCTTACCTTATAAAGGGGATAAAAACTGGCTCACCACATGCCTGAGGTCTGGTTCCACTTCACATACAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR CCA 72 bp GCAGCAACTCTGTATTGTTGGAATACACCAAACACATaGCTCTGGAGTTTCAGACGCCTACAATTTATGGGT +
Preference number: 3 (lower is better)
Translates to: AATLYCWNTPNT*LWSFRRLQFMG
Trigger: ACCCATAAATTGTAGGCGTCTGAAACTCCAGAGCCATGTGTTTGGTGTATTCCAACAATACAGAGTTGCTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR TCA 72 bp CTTTGCTTCAAAACATATCCTCTGCAGACAATGGGTTaGTGCCAAATGCAGGCAATTCCACTGTATGTGAAG +
Preference number: 3 (lower is better)
Translates to: LCFKTYPLQTMG*CQMQAIPLYVK
Trigger: CTTCACATACAGTGGAATTGCCTGCATTTGGCATCAACCCATTGTCTGCAGAGGATATGTTTTGAAGCAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR CCA 72 bp ACTCTGTATTGTTGGAATACACCAAACACATGGCTCTaGAGTTTCAGACGCCTACAATTTATGGGTCTGTTC +
Preference number: 3 (lower is better)
Translates to: TLYCWNTPNTWL*SFRRLQFMGLF
Trigger: GAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAGAGCCATGTGTTTGGTGTATTCCAACAATACAGAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
3UTR CCA 72 bp TGCTTTATTCCTAGGATAGCAGCAACTCTGTATTGTTaGAATACACCAAACACATGGCTCTGGAGTTTCAGA +
Preference number: 3 (lower is better)
Translates to: CFIPRIAATLYC*NTPNTWLWSFR
Trigger: TCTGAAACTCCAGAGCCATGTGTTTGGTGTATTCCAACAATACAGAGTTGCTGCTATCCTAGGAATAAAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR GCA 90 bp CTCCGAGTGGTCTCTAATATCTGCCCTCCCACCTTCCCCACAGCACGCCATCATATCGGGTTGCGGTGCTaGACCCCTGGGGCCTCAGGG +
Preference number: 4 (lower is better)
Translates to: LRVVSNICPPTFPTARHHIGLRC*TPGASG
Trigger: CCCTGAGGCCCCAGGGGTGCAGCACCGCAACCCGAT...ATGATGGCGTGCTGTGGGGAAGGTGGGAGGGCAGATATTAGAGACCACTCGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR GCA 90 bp TTCAGCCGTTCCTCTGAGACACCCTCTTGCAAGGAGAACGCTCCGAGTGGTCTCAGGAGTTCCTCTTCTTaGAACCCGTCCTCGCTGTGC +
Preference number: 4 (lower is better)
Translates to: FSRSSETPSCKENAPSGLRSSSS*NPSSLC
Trigger: GCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCT...GAGACCACTCGGAGCGTTCTCCTTGCAAGAGGGTGTCTCAGAGGAACGGCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CCA 90 bp ATAACCATCCGTGATGTATGTAAAACAAGCCCCACAGAGCTCCACTTGCAAACCGCGGTGCTGCACCCCTaGGGCCTCAGGGACCCTGTG +
Preference number: 4 (lower is better)
Translates to: ITIRDVCKTSPTELHLQTAVLHP*GLRDPV
Trigger: CACAGGGTCCCTGAGGCCCCAGGGGTGCAGCACCGC...GGTTTGCAAGTGGAGCTCTGTGGGGCTTGTTTTACATACATCACGGATGGTTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR GCA 90 bp CCAAACACATGGCTCTGGAGTTTCAGACGCCTACAATTTATGGGTCTGTTCATCCCGAAGGGATCGGGTTaGGGTGCTGCACCCCTGGGG +
Preference number: 4 (lower is better)
Translates to: PNTWLWSFRRLQFMGLFIPKGSG*GAAPLG
Trigger: CCCCAGGGGTGCAGCACCGCAACCCGATCCCTTCGG...GATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAGAGCCATGTGTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR TCA 90 bp ATAACCATCCGTGATGTATGTAAAACAAGCCCCACAGAGCTCCACTTGCAAACCTCGAGTAGCGGGAGCTaGGATCTGACTGAGAGCGCT +
Preference number: 4 (lower is better)
Translates to: ITIRDVCKTSPTELHLQTSSSGS*DLTESA
Trigger: AGCGCTCTCAGTCAGATCTCAGCTCCCGCTACTCGA...GGTTTGCAAGTGGAGCTCTGTGGGGCTTGTTTTACATACATCACGGATGGTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR GCA 90 bp CTGGAGTTTCAGACGCCTACAATTTATGGGTCTGTTCATCACCGGGGAAGTTTGGTGGTGCTAGGCACCTaGTCCAGGAGTTCCTCTTCT +
Preference number: 4 (lower is better)
Translates to: LEFQTPTIYGSVHHRGSLVVLGT*SRSSSS
Trigger: AGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCAC...CAAACTTCCCCGGTGATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CCA 90 bp CTGGAGTTTCAGACGCCTACAATTTATGGGTCTGTTCATCACCGGGGAAGTTTGCCTGGTCTTCTCAGCTaGGGACTTCACGGCTACAAC +
Preference number: 4 (lower is better)
Translates to: LEFQTPTIYGSVHHRGSLPGLLS*GLHGYN
Trigger: GTTGTAGCCGTGAAGTCCCCAGCTGAGAAGACCAGG...CAAACTTCCCCGGTGATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CCA 90 bp ATAACCATCCGTGATGTATGTAAAACAAGCCCCACAGAGCTCCACTTGCAAACCTCATCAGTCCCACTCTaGAACAGTCTGCATCTGACC +
Preference number: 4 (lower is better)
Translates to: ITIRDVCKTSPTELHLQTSSVPL*NSLHLT
Trigger: GGTCAGATGCAGACTGTTCCAGAGTGGGACTGATGA...GGTTTGCAAGTGGAGCTCTGTGGGGCTTGTTTTACATACATCACGGATGGTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CCA 90 bp CCAAACACATGGCTCTGGAGTTTCAGACGCCTACAATTTATGGGTCTGTTCATCCCTGTAATTTCTGGCTaGGGGTTTCTTTGGCCTTCT +
Preference number: 4 (lower is better)
Translates to: PNTWLWSFRRLQFMGLFIPVISG*GFLWPS
Trigger: AGAAGGCCAAAGAAACCCCCAGCCAGAAATTACAGG...GATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAGAGCCATGTGTTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR TCA 90 bp TGGCATAAATCAGTTGAAAGGAGAATAACATTGCATCCATGCTTGATTCCATACCCAGGCCACAATACTTaGAGAAGGTGTCGGACTCAG +
Preference number: 4 (lower is better)
Translates to: WHKSVERRITLHPCLIPYPGHNT*RRCRTQ
Trigger: CTGAGTCCGACACCTTCTTCAAGTATTGTGGCCTGG...GTATGGAATCAAGCATGGATGCAATGTTATTCTCCTTTCAACTGATTTATGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 90 bp AGGTCTCAGAGGCTTTCGAGCGATAGCCCTGCGTGCTACAGGAGCTaGGGCAAGAGCCGAAGGGATCGGGTTGCGGTGCTGCACCCCTGG +
Preference number: 5 (lower is better)
Translates to: RSQRLSSDSPACYRS*GKSRRDRVAVLHPW
Trigger: CCAGGGGTGCAGCACCGCAACCCGATCCCTTCGGCTCTTGCCCCAGCTCCTGTAGCACGCAGGGCTATCGCTCGAAAGCCTCTGAGACCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 90 bp GACCAACGAATCAGGTCTCAGAGGCTTTCGAGCGATAGCCCTGCGTaGTACAGGAGCTGGGGCAAGAGCCGAAGGGATCGGGTTGCGGTG +
Preference number: 5 (lower is better)
Translates to: DQRIRSQRLSSDSPA*YRSWGKSRRDRVAV
Trigger: CACCGCAACCCGATCCCTTCGGCTCTTGCCCCAGCTCCTGTAGCACGCAGGGCTATCGCTCGAAAGCCTCTGAGACCTGATTCGTTGGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 90 bp GGTGTCGGACTCAGCCTTGGCTATCGAGTAGCGGGAGCTGAGATCTaGCTGAGAGCGCTGCAATCCTTTGCTACGCGACACCCGCAGCTG +
Preference number: 5 (lower is better)
Translates to: GVGLSLGYRVAGAEI*LRALQSFATRHPQL
Trigger: CAGCTGCGGGTGTCGCGTAGCAAAGGATTGCAGCGCTCTCAGTCAGATCTCAGCTCCCGCTACTCGATAGCCAAGGCTGAGTCCGACACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 90 bp CCCTCCCGAGAGCCTCCACTACGTCAGGGTCCAGGCCACAATACTTaGAGAAGGTGTCGGACTCAGCCTTGGCTATCGAGTAGCGGGAGC +
Preference number: 5 (lower is better)
Translates to: PSREPPLRQGPGHNT*RRCRTQPWLSSSGS
Trigger: GCTCCCGCTACTCGATAGCCAAGGCTGAGTCCGACACCTTCTTCAAGTATTGTGGCCTGGACCCTGACGTAGTGGAGGCTCTCGGGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 90 bp TACGCGACACCCGCAGCTGCACACCGGAGCATCCGACAGGAACCCTaGGAGCCACTTCAAAAGGCAAGGCTGGGGACTTCACAGCTACTA +
Preference number: 5 (lower is better)
Translates to: YATPAAAHRSIRQEP*EPLQKARLGTSQLL
Trigger: TAGTAGCTGTGAAGTCCCCAGCCTTGCCTTTTGAAGTGGCTCCCAGGGTTCCTGTCGGATGCTCCGGTGTGCAGCTGCGGGTGTCGCGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 90 bp ATGATACGGGCGTTCCTTTCTACTACCGAGGTGGTGCTAGGCACCTaGTCCAGGAGTTCCTCTTCTTGCAACCCGTCCTCGCTGTGCCTG +
Preference number: 5 (lower is better)
Translates to: MIRAFLSTTEVVLGT*SRSSSSCNPSSLCL
Trigger: CAGGCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCACCTCGGTAGTAGAAAGGAACGCCCGTATCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 90 bp ACTACCGAGGTGGTGCTAGGCACCTGCTCCAGGAGTTCCTCTTCTTaGAACCCGTCCTCGCTGTGCCTGGAAAAGCTACTATCAGAAGCA +
Preference number: 5 (lower is better)
Translates to: TTEVVLGTCSRSSSS*NPSSLCLEKLLSEA
Trigger: TGCTTCTGATAGTAGCTTTTCCAGGCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCACCTCGGTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CAA 90 bp CTGGAGTTTCAGACGCCTACAATTTATGGGTCTGTTCATCACCGGGGAAGTTTGTCCAGGCCACAATACTaGAAGAAGGTGTCGGACTCA +
Preference number: 5 (lower is better)
Translates to: LEFQTPTIYGSVHHRGSLSRPQY*KKVSDS
Trigger: TGAGTCCGACACCTTCTTCAAGTATTGTGGCCTGGA...CAAACTTCCCCGGTGATGAACAGACCCATAAATTGTAGGCGTCTGAAACTCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 90 bp CTGGAAAAACTTCTTCATCAGTCCCACTCTGGAACAGTCTGCATCTaGCCCTCGTACGAATTCACATTTCTGCCGATAGATGACCAACGA +
Preference number: 5 (lower is better)
Translates to: LEKLLHQSHSGTVCI*PSYEFTFLPIDDQR
Trigger: TCGTTGGTCATCTATCGGCAGAAATGTGAATTCGTACGAGGGTCAGATGCAGACTGTTCCAGAGTGGGACTGATGAAGAAGTTTTTCCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS-3UTR CAA 90 bp GAAACTGTTATGTACAAAACAGTACTTCTTTTAGCAGGCTCTCAATTCTCACGATGGCTGGGGGTTTCTTaGGCCTTCTTGCAGGTAAAC +
Preference number: 5 (lower is better)
Translates to: ETVMYKTVLLLAGSQFSRWLGVS*AFLQVN
Trigger: GTTTACCTGCAAGAAGGCCAAAGAAACCCCCAGCCA...TCGTGAGAATTGAGAGCCTGCTAAAAGAAGTACTGTTTTGTACATAACAGTTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp GTCCGCTGCCAGTCTCTCCACAGCGCTCTTGTTCGCTaGCCGCGGGGTGAGAGTGTCCTCCGCTGCCCTGGG +
Preference number: 6 (lower is better)
Translates to: VRCQSLHSALVR*PRGESVLRCPG
Trigger: CCCAGGGCAGCGGAGGACACTCTCACCCCGCGGCCAGCGAACAAGAGCGCTGTGGAGAGACTGGCAGCGGAC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 72 bp TTGGCGCGGTCCGCTGCCAGTCTCTCCACAGCGCTCTaGTTCGCTGGCCGCGGGGTGAGAGTGTCCTCCGCT +
Preference number: 6 (lower is better)
Translates to: LARSAASLSTAL*FAGRGVRVSSA
Trigger: AGCGGAGGACACTCTCACCCCGCGGCCAGCGAACAAGAGCGCTGTGGAGAGACTGGCAGCGGACCGCGCCAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 72 bp GAGCGCTGCAATCCTTTGCTACGCGACACCCGCAGCTaGACACCGGAGCATCCGACAGGAACCCTGGGAGCC +
Preference number: 6 (lower is better)
Translates to: ERCNPLLRDTRS*TPEHPTGTLGA
Trigger: GGCTCCCAGGGTTCCTGTCGGATGCTCCGGTGTGCAGCTGCGGGTGTCGCGTAGCAAAGGATTGCAGCGCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp CCCGCAGCTGCACACCGGAGCATCCGACAGGAACCCTaGGAGCCACTTCAAAAGGCAAGGCTGGGGACTTCA +
Preference number: 6 (lower is better)
Translates to: PAAAHRSIRQEP*EPLQKARLGTS
Trigger: TGAAGTCCCCAGCCTTGCCTTTTGAAGTGGCTCCCAGGGTTCCTGTCGGATGCTCCGGTGTGCAGCTGCGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 72 bp ATCAGGTCTCAGAGGCTTTCGAGCGATAGCCCTGCGTaGTACAGGAGCTGGGGCAAGAGCCGAAGGGATCGG +
Preference number: 6 (lower is better)
Translates to: IRSQRLSSDSPA*YRSWGKSRRDR
Trigger: CCGATCCCTTCGGCTCTTGCCCCAGCTCCTGTAGCACGCAGGGCTATCGCTCGAAAGCCTCTGAGACCTGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp GGTGGTAACATAGAGGCTGGTCTGGCGGCTGCTGCCTaGCTCGACTTAGTCCAAGTGGCCTCTGTTTCCTTC +
Preference number: 6 (lower is better)
Translates to: GGNIEAGLAAAA*LDLVQVASVSF
Trigger: GAAGGAAACAGAGGCCACTTGGACTAAGTCGAGCCAGGCAGCAGCCGCCAGACCAGCCTCTATGTTACCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp GACAGGAACCCTGGGAGCCACTTCAAAAGGCAAGGCTaGGGACTTCACAGCTACTACAGGGGTTGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: DRNPGSHFKRQG*GLHSYYRGWRW
Trigger: CCACCTCCAACCCCTGTAGTAGCTGTGAAGTCCCCAGCCTTGCCTTTTGAAGTGGCTCCCAGGGTTCCTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 72 bp GGTGGTGCTAGGCACCTGCTCCAGGAGTTCCTCTTCTaGCAACCCGTCCTCGCTGTGCCTGGAAAAGCTACT +
Preference number: 6 (lower is better)
Translates to: GGARHLLQEFLF*QPVLAVPGKAT
Trigger: AGTAGCTTTTCCAGGCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS GCA 72 bp GTGGTGCTAGGCACCTGCTCCAGGAGTTCCTCTTCTTaGAACCCGTCCTCGCTGTGCCTGGAAAAGCTACTA +
Preference number: 6 (lower is better)
Translates to: VVLGTCSRSSSS*NPSSLCLEKLL
Trigger: TAGTAGCTTTTCCAGGCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp CGTCTTATCTTCATTCGCCACCCTGGTCTTCTCAGCTaGGGACTTCACGGCTACAACAGGGGTTGGAGGTGG +
Preference number: 6 (lower is better)
Translates to: RLIFIRHPGLLS*GLHGYNRGWRW
Trigger: CCACCTCCAACCCCTGTTGTAGCCGTGAAGTCCCCAGCTGAGAAGACCAGGGTGGCGAATGAAGATAAGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp GGTGGTAACATAGAGGCTGGTCTGGTGGCTGCTGCCTaGCTCGACTTAGTCCAAGTGGCCTCTGTTTCCTTC +
Preference number: 6 (lower is better)
Translates to: GGNIEAGLVAAA*LDLVQVASVSF
Trigger: GAAGGAAACAGAGGCCACTTGGACTAAGTCGAGCCAGGCAGCAGCCACCAGACCAGCCTCTATGTTACCACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 90 bp TACTACCGAGGTGGTGCTAGGCACCTGCTCCAGGAGTTCCTCTTCTaGCAACCCGTCCTCGCTGTGCCTGGAAAAGCTACTATCAGAAGC +
Preference number: 6 (lower is better)
Translates to: YYRGGARHLLQEFLF*QPVLAVPGKATIRS
Trigger: GCTTCTGATAGTAGCTTTTCCAGGCACAGCGAGGACGGGTTGCAAGAAGAGGAACTCCTGGAGCAGGTGCCTAGCACCACCTCGGTAGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 72 bp TGTCGGACTCAGCCTTGGCTATCGAGTAGCGGGAGCTaGGATCTGACTGAGAGCGCTGCAATCCTTTGCTAC +
Preference number: 6 (lower is better)
Translates to: CRTQPWLSSSGS*DLTESAAILCY
Trigger: GTAGCAAAGGATTGCAGCGCTCTCAGTCAGATCTCAGCTCCCGCTACTCGATAGCCAAGGCTGAGTCCGACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 72 bp AGAGCCTCCACTACGTCAGGGTCCAGGCCACAATACTaGAAGAAGGTGTCGGACTCAGCCTTGGCTATCGAG +
Preference number: 6 (lower is better)
Translates to: RASTTSGSRPQY*KKVSDSALAIE
Trigger: CTCGATAGCCAAGGCTGAGTCCGACACCTTCTTCAAGTATTGTGGCCTGGACCCTGACGTAGTGGAGGCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp CTGTTTCCTTCGTCGTCTTATCTTCATTCGCCACCCTaGTCTTCTCAGCTGGGGACTTCACGGCTACAACAG +
Preference number: 6 (lower is better)
Translates to: LFPSSSYLHSPP*SSQLGTSRLQQ
Trigger: CTGTTGTAGCCGTGAAGTCCCCAGCTGAGAAGACCAGGGTGGCGAATGAAGATAAGACGACGAAGGAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 90 bp CTGGAAAAGCTACTATCAGAAGCAGCCATGCTCACGCTACGCACTTaGAGTGTAACACAGTCGGATCCAGCAGAAAAGTTCTCCCTCCCG +
Preference number: 6 (lower is better)
Translates to: LEKLLSEAAMLTLRT*SVTQSDPAEKFSLP
Trigger: CGGGAGGGAGAACTTTTCTGCTGGATCCGACTGTGTTACACTCAAAGTGCGTAGCGTGAGCATGGCTGCTTCTGATAGTAGCTTTTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 90 bp CAGGCAGGTCCCTGTAATTTCTGGCTGGGGGTTTCTTTGGCCTTCTaGCAGGTAAACAGCCACTTTATGATACGGGCGTTCCTTTCTACT +
Preference number: 6 (lower is better)
Translates to: QAGPCNFWLGVSLAF*QVNSHFMIRAFLST
Trigger: AGTAGAAAGGAACGCCCGTATCATAAAGTGGCTGTTTACCTGCAAGAAGGCCAAAGAAACCCCCAGCCAGAAATTACAGGGACCTGCCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 72 bp CTGACCCTCGTACGAATTCACATTTCTGCCGATAGATaGCCAACGAATCAGGTCTCAGAGGCTTTCGAGCGA +
Preference number: 6 (lower is better)
Translates to: LTLVRIHISADR*PTNQVSEAFER
Trigger: TCGCTCGAAAGCCTCTGAGACCTGATTCGTTGGTCATCTATCGGCAGAAATGTGAATTCGTACGAGGGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CCA 72 bp CAGACCCCTGGAAAAACTTCTTCATCAGTCCCACTCTaGAACAGTCTGCATCTGACCCTCGTACGAATTCAC +
Preference number: 6 (lower is better)
Translates to: QTPGKTSSSVPL*NSLHLTLVRIH
Trigger: GTGAATTCGTACGAGGGTCAGATGCAGACTGTTCCAGAGTGGGACTGATGAAGAAGTTTTTCCAGGGGTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 72 bp CCCTGTAATTTCTGGCTGGGGGTTTCTTTGGCCTTCTaGCAGGTAAACAGCCACTTTATGATACGGGCGTTC +
Preference number: 6 (lower is better)
Translates to: PCNFWLGVSLAF*QVNSHFMIRAF
Trigger: GAACGCCCGTATCATAAAGTGGCTGTTTACCTGCAAGAAGGCCAAAGAAACCCCCAGCCAGAAATTACAGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS CAA 72 bp CAGGCAGGTCCCTGTAATTTCTGGCTGGGGGTTTCTTaGGCCTTCTTGCAGGTAAACAGCCACTTTATGATA +
Preference number: 6 (lower is better)
Translates to: QAGPCNFWLGVS*AFLQVNSHFMI
Trigger: TATCATAAAGTGGCTGTTTACCTGCAAGAAGGCCAAAGAAACCCCCAGCCAGAAATTACAGGGACCTGCCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10
CDS TCA 72 bp CTTCTTCATCAGTCCCACTCTGGAACAGTCTGCATCTaGCCCTCGTACGAATTCACATTTCTGCCGATAGAT +
Preference number: 6 (lower is better)
Translates to: LLHQSHSGTVCI*PSYEFTFLPID
Trigger: ATCTATCGGCAGAAATGTGAATTCGTACGAGGGTCAGATGCAGACTGTTCCAGAGTGGGACTGATGAAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000041133.10