Pregenerated sensors for FAM104A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041629Ensembl transcript IDs: ENSMUST00000120194.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CGAAATCGCAACAGTGCAGCAAAACCCCGAGTAAGCAGCACCTGCTaGCCCGGCACTCACACTCAAATACAGACGGAAAGCCGACAGGCA | + |
|
Preference number: 1 (lower is better) Translates to: RNRNSAAKPRVSSTC*PGTHTQIQTESRQA Trigger: TGCCTGTCGGCTTTCCGTCTGTATTTGAGTGTGAGTGCCGGGTCAGCAGGTGCTGCTTACTCGGGGTTTTGCTGCACTGTTGCGATTTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR CCA 90 bp | GTGACCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCTTGCAAGCGAGGAAGTTCCATGACAGAATGTaGGCCCCCGGCAGGGCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: VTRRRILAPYSGSLQARKFHDRM*APGRAG Trigger: CCCAGCCCTGCCGGGGGCCCACATTCTGTCATGGAA...CTTCCTCGCTTGCAAGCTGCCTGAATAAGGAGCCAGGATGCGTCGTCGGGTCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | CCCTGTTTGCCTTACTGTTCCAATTCCAGCCAAGTACCCTTCCCCACATCCCTTGGGCTGGCCCTTCCATaGTGTGGCCCTCAGAGGCGG | + |
|
Preference number: 2 (lower is better) Translates to: PCLPYCSNSSQVPFPTSLGLALP*CGPQRR Trigger: CCGCCTCTGAGGGCCACAGCATGGAAGGGCCAGCCC...AAGGGATGTGGGGAAGGGTACTTGGCTGGAATTGGAACAGTAAGGCAAACAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCGCAGGAGGCTATGGGTaGACGCTTAAGGCACTTCCT | + |
|
Preference number: 2 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTAGGYG*TLKALP Trigger: AGGAAGTGCCTTAAGCGTGCACCCATAGCCTCCTGC...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR TCA 90 bp | CTTCTTACTAGAGCCATCCCCGCTCCTCAGCGCTGTCGCCTGTGCTGTGTGGCCCCTGGCTCTCTAGTATaGCCAAGTAGCATAGGAACA | + |
|
Preference number: 2 (lower is better) Translates to: LLTRAIPAPQRCRLCCVAPGSLV*PSSIGT Trigger: TGTTCCTATGCTACTTGGTCATACTAGAGAGCCAGG...GGCCACACAGCACAGGCGACAGCGCTGAGGAGCGGGGATGGCTCTAGTAAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR CCA 90 bp | CACTGGTCAGAGCATGGGAAGAGCCTTTGTCTTCAGATGTCTCCCCTGTGCCTTCAGGCAGCCTGCACTTaGTCTGCACTGACCACTGCC | + |
|
Preference number: 2 (lower is better) Translates to: HWSEHGKSLCLQMSPLCLQAACT*SALTTA Trigger: GGCAGTGGTCAGTGCAGACCAAGTGCAGGCTGCCTG...AAGGCACAGGGGAGACATCTGAAGACAAAGGCTCTTCCCATGCTCTGACCAGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CAA 90 bp | CTGTTGACTGGCACCCCGACACTGGTCAGAGCATGGGAAGAGCCTTaGTCTTCAGATGTCTCCCCTGTGCCTTTAGTTGGGTGGGAGATG | + |
|
Preference number: 2 (lower is better) Translates to: LLTGTPTLVRAWEEP*SSDVSPVPLVGWEM Trigger: CATCTCCCACCCAACTAAAGGCACAGGGGAGACATCTGAAGACAAAGGCTCTTCCCATGCTCTGACCAGTGTCGGGGTGCCAGTCAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | GTGACCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCTTGCAAGCGAGGAAGATCCAATCTGCACAGTaGTGTCCCTTCACAGAAGGC | + |
|
Preference number: 2 (lower is better) Translates to: VTRRRILAPYSGSLQARKIQSAQ*CPFTEG Trigger: GCCTTCTGTGAAGGGACAGCACTGTGCAGATTGGAT...CTTCCTCGCTTGCAAGCTGCCTGAATAAGGAGCCAGGATGCGTCGTCGGGTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | CCCTGTTTGCCTTACTGTTCCAATTCCAGCCAAGTACCCTTCCCCACATCCCTTGTCTGCACTGACCACTaGCTTGGCTATGGGCACCGC | + |
|
Preference number: 2 (lower is better) Translates to: PCLPYCSNSSQVPFPTSLVCTDH*LGYGHR Trigger: GCGGTGCCCATAGCCAAGGCAGTGGTCAGTGCAGAC...AAGGGATGTGGGGAAGGGTACTTGGCTGGAATTGGAACAGTAAGGCAAACAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTCTCTTCCTGGCACGGGCCTCCTTCAGACTGTCGCTGTATCACACAGTAACCTGTGTGGCCTCTGAGTaGGGTGCAGTGAAGGGGACA | + |
|
Preference number: 2 (lower is better) Translates to: ILFLARASFRLSLYHTVTCVASE*GAVKGT Trigger: TGTCCCCTTCACTGCACCCCACTCAGAGGCCACACA...GGTTACTGTGTGATACAGCGACAGTCTGAAGGAGGCCCGTGCCAGGAAGAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | CCTGTTTCTACACCACACCAATCTTTCCAGTTCCATGACAGAATGTGGGCCCCCAGCCTGCACTTGGTCTaGACTGACCACTGCCTTGGC | + |
|
Preference number: 2 (lower is better) Translates to: PVSTPHQSFQFHDRMWAPSLHLV*TDHCLG Trigger: GCCAAGGCAGTGGTCAGTGCAGACCAAGTGCAGGCT...GGGGGCCCACATTCTGTCATGGAACTGGAAAGATTGGTGTGGTGTAGAAACAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR TCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCAGCTATTTCTTGACTTaGGCACTGCGCAATGTTCTC | + |
|
Preference number: 2 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTSYFLT*ALRNVL Trigger: GAGAACATTGCGCAGTGCTCAAGTCAAGAAATAGCT...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR TCA 90 bp | CCCTGTTTGCCTTACTGTTCCAATTCCAGCCAAGTACCCTTCCCCACATCCCTTATCTTTCCAGTTCCATaGCAGAATGTGGGCCCCCGG | + |
|
Preference number: 2 (lower is better) Translates to: PCLPYCSNSSQVPFPTSLIFPVP*QNVGPR Trigger: CCGGGGGCCCACATTCTGTCATGGAACTGGAAAGAT...AAGGGATGTGGGGAAGGGTACTTGGCTGGAATTGGAACAGTAAGGCAAACAGGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR GCA 90 bp | TGTCTCCCCTGTGCCTTTAGTTGGGTGGGAGATGGGGAGAAACGTGCTTCGGCCTTGAAATATCCAATCTaGACAGTGCTGTCCCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: CLPCAFSWVGDGEKRASALKYPI*TVLSLH Trigger: GTGAAGGGACAGCACTGTGCAGATTGGATATTTCAA...GGCCGAAGCACGTTTCTCCCCATCTCCCACCCAACTAAAGGCACAGGGGAGACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR CCA 90 bp | AGGCAGGAGGCTATGGGTGCACGCTTAAGGCACTTCCTCTTTATCTATATGGCACCCTGGTCTTCCGAGTaGACGGCTGTTCTGTTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: RQEAMGARLRHFLFIYMAPWSSE*TAVLFQ Trigger: TTGGAACAGAACAGCCGTCCACTCGGAAGACCAGGG...TGCCATATAGATAAAGAGGAAGTGCCTTAAGCGTGCACCCATAGCCTCCTGCCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR TCA 90 bp | ACACCACACCAATCTTTCCAGTTCCATGACAGAATGTGGGCCCCCGGCAGGGCTTTACTAGCTATTTCTTaGCTTGAGCACTGCGCAATG | + |
|
Preference number: 2 (lower is better) Translates to: TPHQSFQFHDRMWAPGRALLAIS*LEHCAM Trigger: CATTGCGCAGTGCTCAAGTCAAGAAATAGCTAGTAA...AGCCCTGCCGGGGGCCCACATTCTGTCATGGAACTGGAAAGATTGGTGTGGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR-3UTR CCA 90 bp | CCCTGTTTGCCTTACTGTTCCAATTCCAGCCAAGTACCCTTCCCCACATCCCTTTTATTCAAGCTTGCCTaGCTCTCTAGTATGACCAAG | + |
|
Preference number: 2 (lower is better) Translates to: PCLPYCSNSSQVPFPTSLLFKLA*LSSMTK Trigger: CTTGGTCATACTAGAGAGCCAGGCAAGCTTGAATAA...AAGGGATGTGGGGAAGGGTACTTGGCTGGAATTGGAACAGTAAGGCAAACAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR GCA 72 bp | ACTAGAGCCATCCCCGCTCCTCAGCGCTGTCGCCTGTaGTGTGTGGCCTCTGAGTGGGGTGCAGTGAAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: TRAIPAPQRCRL*CVASEWGAVKG Trigger: CCCCTTCACTGCACCCCACTCAGAGGCCACACAGCACAGGCGACAGCGCTGAGGAGCGGGGATGGCTCTAGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR TCA 72 bp | CTAGGTGTTAGCAGGCAGCCTGCACTTGGTCTGCACTaGCCACTGCCTTGGCTATGGGCACCGCAAGGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: LGVSRQPALGLH*PLPWLWAPQGA Trigger: AGCTCCTTGCGGTGCCCATAGCCAAGGCAGTGGTCAGTGCAGACCAAGTGCAGGCTGCCTGCTAACACCTAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR GCA 72 bp | CCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCTTaGAAGCGAGGAAGACGACTCACCTGCACCTTCATT | + |
|
Preference number: 3 (lower is better) Translates to: PDDASWLLIQAA*KRGRRLTCTFI Trigger: AATGAAGGTGCAGGTGAGTCGTCTTCCTCGCTTGCAAGCTGCCTGAATAAGGAGCCAGGATGCGTCGTCGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CCA 72 bp | GCGGCCATGGAAGGCACTGCATGTTCATTCTCTTCCTaGCACGGGCCTCCTTCAGACTGTCGCTGTATCACA | + |
|
Preference number: 3 (lower is better) Translates to: AAMEGTACSFSS*HGPPSDCRCIT Trigger: TGTGATACAGCGACAGTCTGAAGGAGGCCCGTGCCAGGAAGAGAATGAACATGCAGTGCCTTCCATGGCCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CCA 72 bp | TTGTCTTCAGATGTCTCCCCTGTGCCTTTAGTTGGGTaGGAGATGGGGAGAAACGTGCTTCGGCCAGCACGG | + |
|
Preference number: 3 (lower is better) Translates to: LSSDVSPVPLVG*EMGRNVLRPAR Trigger: CCGTGCTGGCCGAAGCACGTTTCTCCCCATCTCCCACCCAACTAAAGGCACAGGGGAGACATCTGAAGACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CCA 72 bp | CTTCAGACTGTCGCTGTATCACACAGTAACCTGCTCTaGCCCAGGCGTCCCTCTCAGACCCTTCTTACTAGA | + |
|
Preference number: 3 (lower is better) Translates to: LQTVAVSHSNLL*PRRPSQTLLTR Trigger: TCTAGTAAGAAGGGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGTCTGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CCA 72 bp | GTAGGACACCGTGCATTAAGCCTGCCGGAGCCCTCCTaGGTATTTCTGGATTGTGTTGTGTCCATGTGTGCT | + |
|
Preference number: 3 (lower is better) Translates to: VGHRALSLPEPS*VFLDCVVSMCA Trigger: AGCACACATGGACACAACACAATCCAGAAATACCCAGGAGGGCTCCGGCAGGCTTAATGCACGGTGTCCTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR TCA 72 bp | TACGAGTTCATAACATTTACTAGCTATTTCTTGACTTaGGCACTGCGCAATGTTCTCTATAGCGTCTGGGGT | + |
|
Preference number: 3 (lower is better) Translates to: YEFITFTSYFLT*ALRNVLYSVWG Trigger: ACCCCAGACGCTATAGAGAACATTGCGCAGTGCTCAAGTCAAGAAATAGCTAGTAAATGTTATGAACTCGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR TCA 90 bp | CTTCTTACTAGAGCCATCCCCGCTCCTCAGCGCTGTCGCCTGTGCTGTGTGGCCGGTTGCTGCGGGCGCTaGGTCCCCCTCGGGCCGACC | + |
|
Preference number: 4 (lower is better) Translates to: LLTRAIPAPQRCRLCCVAGCCGR*VPLGPT Trigger: GGTCGGCCCGAGGGGGACTCAGCGCCCGCAGCAACC...GGCCACACAGCACAGGCGACAGCGCTGAGGAGCGGGGATGGCTCTAGTAAGAAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR TCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCGCTCATGGCAGCTGGTaGAGGCGAGCGACGCGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTAHGSW*RRATRR Trigger: GCGCCGCGTCGCTCGCCTTCACCAGCTGCCATGAGC...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | CACTTGGTCTGCACTGACCACTGCCTTGGCTATGGGCACCGCAAGGAGCTAGCAGGAGGCGCTCGCTCATaGCAGCTGGTGAAGGCGAGC | + |
|
Preference number: 4 (lower is better) Translates to: HLVCTDHCLGYGHRKELAGGARS*QLVKAS Trigger: GCTCGCCTTCACCAGCTGCCATGAGCGAGCGCCTCC...TGCTAGCTCCTTGCGGTGCCCATAGCCAAGGCAGTGGTCAGTGCAGACCAAGTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | GTGACCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCTTGCAAGCGAGGAAGGATCCGGGGATGGTGTaGCTCAGGCTGCTCTCTGGC | + |
|
Preference number: 4 (lower is better) Translates to: VTRRRILAPYSGSLQARKDPGMV*LRLLSG Trigger: GCCAGAGAGCAGCCTGAGCCACACCATCCCCGGATC...CTTCCTCGCTTGCAAGCTGCCTGAATAAGGAGCCAGGATGCGTCGTCGGGTCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | GTGACCCGACGACGCATCCTGGCTCCTTATTCAGGCAGCTTGCAAGCGAGGAAGCCCACTGGCCCTGTCTaGGCTGTTGATGCTGCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: VTRRRILAPYSGSLQARKPTGPV*AVDAAA Trigger: AGCAGCAGCATCAACAGCCCAGACAGGGCCAGTGGG...CTTCCTCGCTTGCAAGCTGCCTGAATAAGGAGCCAGGATGCGTCGTCGGGTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | TCTTCCGAGTGGACGGCTGTTCTGTTCCAAGGGAGAGCATCCCATAGACAGACATGCTCAGGCATCGGCTaGGGGGTGCTGGGGCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: SSEWTAVLFQGRASHRQTCSGIG*GVLGQD Trigger: ATCCTGCCCCAGCACCCCCCAGCCGATGCCTGAGCA...TGTCTGTCTATGGGATGCTCTCCCTTGGAACAGAACAGCCGTCCACTCGGAAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCTTCTTCTCCTTTTTCTaGGGCGGAGGCGCTCGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTFFSFF*GGGARS Trigger: TGAGCGAGCGCCTCCGCCCCAGAAAAAGGAGAAGAA...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCGTCTGGGGAGGAGGGTaGTTGTCATCATCACTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTVWGGG*LSSSLP Trigger: TGGCAGTGATGATGACAACCACCCTCCTCCCCAGAC...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR TCA 90 bp | ACTGTCGCTGTATCACACAGTAACCTGCTCTGGCCCAGGCGTCCCTCTCAGACCCCTTCAGGGTCTGGTTaGTGTGGAAGTAAGGGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: TVAVSHSNLLWPRRPSQTPSGSG*CGSKGL Trigger: AAGGCCCTTACTTCCACATCAACCAGACCCTGAAGG...GGTCTGAGAGGGACGCCTGGGCCAGAGCAGGTTACTGTGTGATACAGCGACAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | ACACCACACCAATCTTTCCAGTTCCATGACAGAATGTGGGCCCCCGGCAGGGCTGTGTCCCAGGAGTCCTaGAAGATGGGGTTCCTACTG | + |
|
Preference number: 4 (lower is better) Translates to: TPHQSFQFHDRMWAPGRAVSQES*KMGFLL Trigger: CAGTAGGAACCCCATCTTCCAGGACTCCTGGGACAC...AGCCCTGCCGGGGGCCCACATTCTGTCATGGAACTGGAAAGATTGGTGTGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| 3UTR CAA 72 bp | GGCACCCCGACACTGGTCAGAGCATGGGAAGAGCCTTaGTCTTCAGATGTCTCCCCTGTGCCTTTAGTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GTPTLVRAWEEP*SSDVSPVPLVG Trigger: CCCAACTAAAGGCACAGGGGAGACATCTGAAGACAAAGGCTCTTCCCATGCTCTGACCAGTGTCGGGGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR TCA 90 bp | AGGCAGGAGGCTATGGGTGCACGCTTAAGGCACTTCCTCTTTATCTATATGGCACCCTGTCTGGGCTGTTaGTGCTGCTGCTGCTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: RQEAMGARLRHFLFIYMAPCLGC*CCCCCC Trigger: GCAGCAGCAGCAGCAGCATCAACAGCCCAGACAGGG...TGCCATATAGATAAAGAGGAAGTGCCTTAAGCGTGCACCCATAGCCTCCTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR TCA 90 bp | TCTTCCGAGTGGACGGCTGTTCTGTTCCAAGGGAGAGCATCCCATAGACAGACAACCACTGTCGCTGCTTaGAGACTCTGTGTCCCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: SSEWTAVLFQGRASHRQTTTVAA*RLCVPG Trigger: TCCTGGGACACAGAGTCTTCAAGCAGCGACAGTGGT...TGTCTGTCTATGGGATGCTCTCCCTTGGAACAGAACAGCCGTCCACTCGGAAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CCA 90 bp | CCCTGTTTGCCTTACTGTTCCAATTCCAGCCAAGTACCCTTCCCCACATCCCTTCTGCTCCTTTTGGTCTaGGGAGGAGGGTGGTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: PCLPYCSNSSQVPFPTSLLLLLV*GGGWLS Trigger: TGACAACCACCCTCCTCCCCAGACCAAAAGGAGCAG...AAGGGATGTGGGGAAGGGTACTTGGCTGGAATTGGAACAGTAAGGCAAACAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR GCA 90 bp | AGGCAGGAGGCTATGGGTGCACGCTTAAGGCACTTCCTCTTTATCTATATGGCAGGTTGTCATCATCACTaGCATTTCTTCTCCTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: RQEAMGARLRHFLFIYMAGCHHH*HFFSFF Trigger: GAAAAAGGAGAAGAAATGGCAGTGATGATGACAACC...TGCCATATAGATAAAGAGGAAGTGCCTTAAGCGTGCACCCATAGCCTCCTGCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS TCA 90 bp | GGTCTGAGCTCTGACCGCCGCCGCGCGGGTGGTTGCTGCGGGCGCTaGGTCCCCCTCGGGCCGACCCGGACCACAGCCACTTCCGGTGTC | + |
|
Preference number: 5 (lower is better) Translates to: GLSSDRRRAGGCCGR*VPLGPTRTTATSGV Trigger: GACACCGGAAGTGGCTGTGGTCCGGGTCGGCCCGAGGGGGACTCAGCGCCCGCAGCAACCACCCGCGCGGCGGCGGTCAGAGCTCAGACC 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CAA 90 bp | ATTCTCTTCCTGGCACGGGCCTCCTTCAGACTGTCGCTGTATCACACAGTAACCTTCCTACTGCTCCTTTaGGTCTGGGGAGGAGGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: ILFLARASFRLSLYHTVTFLLLL*VWGGGW Trigger: CCACCCTCCTCCCCAGACCAAAAGGAGCAGTAGGAA...GGTTACTGTGTGATACAGCGACAGTCTGAAGGAGGCCCGTGCCAGGAAGAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CAA 90 bp | ATTCTCTTCCTGGCACGGGCCTCCTTCAGACTGTCGCTGTATCACACAGTAACCTGGGGAGGAGGGTGGTaGTCATCATCACTGCCATTT | + |
|
Preference number: 5 (lower is better) Translates to: ILFLARASFRLSLYHTVTWGGGW*SSSLPF Trigger: AAATGGCAGTGATGATGACAACCACCCTCCTCCCCA...GGTTACTGTGTGATACAGCGACAGTCTGAAGGAGGCCCGTGCCAGGAAGAGAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS-3UTR CAA 90 bp | CAAATCATTAAGTTGAAATATCCAATCTGCACAGTGCTGTCCCTTCACAGAAGGGCCCTGTCTGGGCTGTaGATGCTGCTGCTGCTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: QIIKLKYPICTVLSLHRRALSGL*MLLLLL Trigger: CAGCAGCAGCAGCAGCATCAACAGCCCAGACAGGGC...CCTTCTGTGAAGGGACAGCACTGTGCAGATTGGATATTTCAACTTAATGATTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS TCA 72 bp | TCTGACCGCCGCCGCGCGGGTGGTTGCTGCGGGCGCTaGGTCCCCCTCGGGCCGACCCGGACCACAGCCACT | + |
|
Preference number: 6 (lower is better) Translates to: SDRRRAGGCCGR*VPLGPTRTTAT Trigger: AGTGGCTGTGGTCCGGGTCGGCCCGAGGGGGACTCAGCGCCCGCAGCAACCACCCGCGCGGCGGCGGTCAGA 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS CCA 72 bp | TTCTTCTCCTTTTTCTGGGGCGGAGGCGCTCGCTCATaGCAGCTGGTGAAGGCGAGCGACGCGGCGCCGCCC | + |
|
Preference number: 6 (lower is better) Translates to: FFSFFWGGGARS*QLVKASDAAPP Trigger: GGGCGGCGCCGCGTCGCTCGCCTTCACCAGCTGCCATGAGCGAGCGCCTCCGCCCCAGAAAAAGGAGAAGAA 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS TCA 72 bp | GCTGCTGCTGCTGCTGCTCCCACCACTGTCGCTGCTTaGAGACTCTGTGTCCCAGGAGTCCTGGAAGATGGG | + |
|
Preference number: 6 (lower is better) Translates to: AAAAAAPTTVAA*RLCVPGVLEDG Trigger: CCCATCTTCCAGGACTCCTGGGACACAGAGTCTTCAAGCAGCGACAGTGGTGGGAGCAGCAGCAGCAGCAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS CCA 72 bp | CTGTCGCTGCTTGAAGACTCTGTGTCCCAGGAGTCCTaGAAGATGGGGTTCCTACTGCTCCTTTTGGTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LSLLEDSVSQES*KMGFLLLLLVW Trigger: CCAGACCAAAAGGAGCAGTAGGAACCCCATCTTCCAGGACTCCTGGGACACAGAGTCTTCAAGCAGCGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||
| CDS CAA 72 bp | CAGGAGTCCTGGAAGATGGGGTTCCTACTGCTCCTTTaGGTCTGGGGAGGAGGGTGGTTGTCATCATCACTG | + |
|
Preference number: 6 (lower is better) Translates to: QESWKMGFLLLL*VWGGGWLSSSL Trigger: CAGTGATGATGACAACCACCCTCCTCCCCAGACCAAAAGGAGCAGTAGGAACCCCATCTTCCAGGACTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120194.2 |
||