RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FAIML (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096316

Ensembl transcript IDs: ENSMUST00000178051.8, ENSMUST00000188555.2

Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp ACATTTAATTGCCACAGTCATCAGCAAGTTCTGAGGTCACCTCCTCAGCTCAGACACAACTCGTTTGCCTaGTGTGGTCCCATGTTCAAA +
Preference number: 4 (lower is better)
Translates to: TFNCHSHQQVLRSPPQLRHNSFA*CGPMFK
Trigger: TTTGAACATGGGACCACATCAGGCAAACGAGTTGTG...TCTGAGCTGAGGAGGTGACCTCAGAACTTGCTGATGACTGTGGCAATTAAATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS-3UTR CCA 90 bp TTGCCACAGTCATCAGCAAGTTCTGAGGTCACCTCCTCAGCTCAGAACTCAGTACTCGTTTGCCTGATGTaGTCCCATGTTCAAATTCAA +
Preference number: 4 (lower is better)
Translates to: LPQSSASSEVTSSAQNSVLVCLM*SHVQIQ
Trigger: TTGAATTTGAACATGGGACCACATCAGGCAAACGAG...TACTGAGTTCTGAGCTGAGGAGGTGACCTCAGAACTTGCTGATGACTGTGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS-3UTR GCA 90 bp ACATTTAATTGCCACAGTCATCAGCAAGTTCTGAGGTCACCTCCTCAGCTCAGACACAGAAGGTTTCTTTaGCCACTAAAGGGAACATCC +
Preference number: 4 (lower is better)
Translates to: TFNCHSHQQVLRSPPQLRHRRFL*PLKGTS
Trigger: GGATGTTCCCTTTAGTGGGCAAAGAAACCTTCTGTG...TCTGAGCTGAGGAGGTGACCTCAGAACTTGCTGATGACTGTGGCAATTAAATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS-3UTR CCA 90 bp ACATTTAATTGCCACAGTCATCAGCAAGTTCTGAGGTCACCTCCTCAGCTCAGATCCACAATGAGGGTATaGATAATCCCTTCTCTCTTC +
Preference number: 4 (lower is better)
Translates to: TFNCHSHQQVLRSPPQLRSTMRV*IIPSLF
Trigger: GAAGAGAGAAGGGATTATCCATACCCTCATTGTGGA...TCTGAGCTGAGGAGGTGACCTCAGAACTTGCTGATGACTGTGGCAATTAAATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS-3UTR CCA 90 bp GATAAGCACACATTGAGCACATTTAATTGCCACAGTCATCAGCAAGTTCTGAGGTCACTGAGTGAGCTCTaGGATTTCCCTGTTATCCAC +
Preference number: 4 (lower is better)
Translates to: DKHTLSTFNCHSHQQVLRSLSEL*DFPVIH
Trigger: GTGGATAACAGGGAAATCCCAGAGCTCACTCAGTGA...CCTCAGAACTTGCTGATGACTGTGGCAATTAAATGTGCTCAATGTGTGCTTATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS TCA 90 bp TCCCGCTGCTCACGGCTTTTATGTAACAGCCGTGGTTCCCAACGCTaGAGTGCGTCTCAGTCCCGTCATCTACAAACTCGCCCACCGACT +
Preference number: 5 (lower is better)
Translates to: SRCSRLLCNSRGSQR*SASQSRHLQTRPPT
Trigger: AGTCGGTGGGCGAGTTTGTAGATGACGGGACTGAGACGCACTTCAGCGTTGGGAACCACGGCTGTTACATAAAAGCCGTGAGCAGCGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS-3UTR CAA 90 bp CCACAGTCATCAGCAAGTTCTGAGGTCACCTCCTCAGCTCAGAACTCAGTAAGACTAAAACCACAACCTTaGCCAGAAAGTATACGTATG +
Preference number: 5 (lower is better)
Translates to: PQSSASSEVTSSAQNSVRLKPQP*PESIRM
Trigger: CATACGTATACTTTCTGGCAAAGGTTGTGGTTTTAG...TCTTACTGAGTTCTGAGCTGAGGAGGTGACCTCAGAACTTGCTGATGACTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS TCA 90 bp TTTTCTTATCACTTCCTTTCCATCCACGTACACAACTCGTTTGCCTaGTGTGGTCCCATGTTCAAATTCAATCTTGTGGACTCCATCACT +
Preference number: 5 (lower is better)
Translates to: FSYHFLSIHVHNSFA*CGPMFKFNLVDSIT
Trigger: AGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS GCA 90 bp ACTCTTTTCTTATCACTTCCTTTCCATCCACGTACACAACTCGTTTaGCTGATGTGGTCCCATGTTCAAATTCAATCTTGTGGACTCCAT +
Preference number: 5 (lower is better)
Translates to: TLFLSLPFHPRTQLV*LMWSHVQIQSCGLH
Trigger: ATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAAGAAAAGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CCA 90 bp TTATCACTTCCTTTCCATCCACGTACACAACTCGTTTGCCTGATGTaGTCCCATGTTCAAATTCAATCTTGTGGACTCCATCACTTAAAA +
Preference number: 5 (lower is better)
Translates to: LSLPFHPRTQLVCLM*SHVQIQSCGLHHLK
Trigger: TTTTAAGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CCA 90 bp ACAACTCGTTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTTGTaGACTCCATCACTTAAAATAACATCCCAGATAGCTGCAATTTTC +
Preference number: 5 (lower is better)
Translates to: TTRLPDVVPCSNSIL*TPSLKITSQIAAIF
Trigger: GAAAATTGCAGCTATCTGGGATGTTATTTTAAGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS-3UTR CAA 90 bp ATTGATAAGCACACATTGAGCACATTTAATTGCCACAGTCATCAGCAAGTTCTGACAATTCTAAAGTCTTaGTCATCCAAGTGCAATACC +
Preference number: 5 (lower is better)
Translates to: IDKHTLSTFNCHSHQQVLTILKS*SSKCNT
Trigger: GGTATTGCACTTGGATGACAAAGACTTTAGAATTGT...CAGAACTTGCTGATGACTGTGGCAATTAAATGTGCTCAATGTGTGCTTATCAAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000178051.8
CDS TCA 72 bp TCACGGCTTTTATGTAACAGCCGTGGTTCCCAACGCTaGAGTGCGTCTCAGTCCCGTCATCTACAAACTCGC +
Preference number: 6 (lower is better)
Translates to: SRLLCNSRGSQR*SASQSRHLQTR
Trigger: GCGAGTTTGTAGATGACGGGACTGAGACGCACTTCAGCGTTGGGAACCACGGCTGTTACATAAAAGCCGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CCA 72 bp AGCTCTGGGATTTCCCTGTTATCCACAATGAGGGTATaGATAATCCCTTCTCTCTTCTTCCCGCTGCTCACG +
Preference number: 6 (lower is better)
Translates to: SSGISLLSTMRV*IIPSLFFPLLT
Trigger: CGTGAGCAGCGGGAAGAAGAGAGAAGGGATTATCCATACCCTCATTGTGGATAACAGGGAAATCCCAGAGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS TCA 72 bp CACTTCCTTTCCATCCACGTACACAACTCGTTTGCCTaGTGTGGTCCCATGTTCAAATTCAATCTTGTGGAC +
Preference number: 6 (lower is better)
Translates to: HFLSIHVHNSFA*CGPMFKFNLVD
Trigger: GTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CCA 72 bp CCTTTCCATCCACGTACACAACTCGTTTGCCTGATGTaGTCCCATGTTCAAATTCAATCTTGTGGACTCCAT +
Preference number: 6 (lower is better)
Translates to: PFHPRTQLVCLM*SHVQIQSCGLH
Trigger: ATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CAA 90 bp CACTCTTTTCTTATCACTTCCTTTCCATCCACGTACACAACTCGTTaGCCTGATGTGGTCCCATGTTCAAATTCAATCTTGTGGACTCCA +
Preference number: 6 (lower is better)
Translates to: HSFLITSFPSTYTTR*PDVVPCSNSILWTP
Trigger: TGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAAGAAAAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CAA 72 bp CTTATCACTTCCTTTCCATCCACGTACACAACTCGTTaGCCTGATGTGGTCCCATGTTCAAATTCAATCTTG +
Preference number: 6 (lower is better)
Translates to: LITSFPSTYTTR*PDVVPCSNSIL
Trigger: CAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS GCA 72 bp TTATCACTTCCTTTCCATCCACGTACACAACTCGTTTaGCTGATGTGGTCCCATGTTCAAATTCAATCTTGT +
Preference number: 6 (lower is better)
Translates to: LSLPFHPRTQLV*LMWSHVQIQSC
Trigger: ACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTACGTGGATGGAAAGGAAGTGATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CAA 90 bp TACACAACTCGTTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTaGTGGACTCCATCACTTAAAATAACATCCCAGATAGCTGCAATT +
Preference number: 6 (lower is better)
Translates to: YTTRLPDVVPCSNSI*WTPSLKITSQIAAI
Trigger: AATTGCAGCTATCTGGGATGTTATTTTAAGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACGAGTTGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CCA 72 bp TTGCCTGATGTGGTCCCATGTTCAAATTCAATCTTGTaGACTCCATCACTTAAAATAACATCCCAGATAGCT +
Preference number: 6 (lower is better)
Translates to: LPDVVPCSNSIL*TPSLKITSQIA
Trigger: AGCTATCTGGGATGTTATTTTAAGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2
CDS CAA 72 bp CGTTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTaGTGGACTCCATCACTTAAAATAACATCCCAGATA +
Preference number: 6 (lower is better)
Translates to: RLPDVVPCSNSI*WTPSLKITSQI
Trigger: TATCTGGGATGTTATTTTAAGTGATGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000178051.8
ENSMUST00000188555.2