Pregenerated sensors for FAIM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032463Ensembl transcript IDs: ENSMUST00000035038.8, ENSMUST00000112911.9, ENSMUST00000185472.2
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAATCTAACAATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGGCGCAGCACCCAGGTaGTGGTGGTCTTTGACCTGT | + |
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Preference number: 4 (lower is better) Translates to: KSNNMYILNPFNYHSHRRGAAPR*WWSLTC Trigger: ACAGGTCAAAGACCACCAGCACCTGGGTGCTGCGCC...TCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR TCA 90 bp | TCAAGGTTACTGTTGTGGGATGTTAGTGGTTTGGTCCACATTTTATTTTCCATTCACAACCCGCTTGCCTaGTGTGGTCCCATGTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: SRLLLWDVSGLVHILFSIHNPLA*CGPMFK Trigger: TTTGAACATGGGACCACATCAGGCAAGCGGGTTGTG...AATGGAAAATAAAATGTGGACCAAACCACTAACATCCCACAACAGTAACCTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR TCA 90 bp | TCAAGGTTACTGTTGTGGGATGTTAGTGGTTTGGTCCACATTTTATTTTCCATTGCTGTCTCCATTTTCTaGCCATTGCACCATACGTCC | + |
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Preference number: 4 (lower is better) Translates to: SRLLLWDVSGLVHILFSIAVSIF*PLHHTS Trigger: GGACGTATGGTGCAATGGTCAGAAAATGGAGACAGC...AATGGAAAATAAAATGTGGACCAAACCACTAACATCCCACAACAGTAACCTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CCA 90 bp | TCTAACAATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGTCCCCGCTTGCCTGATGTaGTCCCATGTTCAAATTCAA | + |
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Preference number: 4 (lower is better) Translates to: SNNMYILNPFNYHSHRRVPACLM*SHVQIQ Trigger: TTGAATTTGAACATGGGACCACATCAGGCAAGCGGG...GACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CCA 90 bp | AATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGTCCCGAGGTCAAATTCAATCTTGTaGACTCCGTCACTTAATGCT | + |
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Preference number: 4 (lower is better) Translates to: NMYILNPFNYHSHRRVPRSNSIL*TPSLNA Trigger: AGCATTAAGTGACGGAGTCCACAAGATTGAATTTGA...CCTCGGGACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR TCA 90 bp | AAATCTAACAATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGATCTCCATGTACTTCTTaGGGCTCTTCCCATCAATTT | + |
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Preference number: 4 (lower is better) Translates to: KSNNMYILNPFNYHSHRRSPCTS*GSSHQF Trigger: AAATTGATGGGAAGAGCCTCAAGAAGTACATGGAGA...TCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CCA 90 bp | AAATCTAACAATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGATCCACAATGAGGGTATaGATAATCCCTTCTTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: KSNNMYILNPFNYHSHRRSTMRV*IIPSFL Trigger: GAGGAAAGAAGGGATTATCCATACCCTCATTGTGGA...TCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGATTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR TCA 90 bp | TCAAGGTTACTGTTGTGGGATGTTAGTGGTTTGGTCCACATTTTATTTTCCATTTTATGGCATCTATATTaGTGGTGGCTTTGGTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: SRLLLWDVSGLVHILFSILWHLY*WWLWFL Trigger: CAAAAACCAAAGCCACCATCAATATAGATGCCATAA...AATGGAAAATAAAATGTGGACCAAACCACTAACATCCCACAACAGTAACCTTGA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| 3UTR CAA 72 bp | AAAACATTGCAGACTAAATCTAACAATATGTACATATaGAACCCATTTAATTACCACAGCCATCGGCGAGTC | + |
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Preference number: 4 (lower is better) Translates to: KTLQTKSNNMYI*NPFNYHSHRRV Trigger: GACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGATTTAGTCTGCAATGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS TCA 90 bp | TTCCGCTGCTCACAGCTTTTATGTAACAGCCGTGGTTCCCAACGCTaGAGTGCGTCTCAGTCCCATCATCTACAAACTCGCCCGCTGTCT | + |
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Preference number: 5 (lower is better) Translates to: FRCSQLLCNSRGSQR*SASQSHHLQTRPLS Trigger: AGACAGCGGGCGAGTTTGTAGATGATGGGACTGAGACGCACTTCAGCGTTGGGAACCACGGCTGTTACATAAAAGCTGTGAGCAGCGGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CCA 90 bp | ACAACCCGCTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTTGTaGACTCCGTCACTTAATGCTACGTCCCAAACAGCTACGAGATCC | + |
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Preference number: 5 (lower is better) Translates to: TTRLPDVVPCSNSIL*TPSLNATSQTATRS Trigger: GGATCTCGTAGCTGTTTGGGACGTAGCATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 90 bp | TCTTCTTATCTCTTCCTTCCCATCCACGTACACAACCCGCTTGCCTaGTGTGGTCCCATGTTCAAATTCAATCTTGTGGACTCCGTCACT | + |
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Preference number: 5 (lower is better) Translates to: SSYLFLPIHVHNPLA*CGPMFKFNLVDSVT Trigger: AGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGGAAGAGATAAGAAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CCA 90 bp | TTATCTCTTCCTTCCCATCCACGTACACAACCCGCTTGCCTGATGTaGTCCCATGTTCAAATTCAATCTTGTGGACTCCGTCACTTAATG | + |
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Preference number: 5 (lower is better) Translates to: LSLPSHPRTQPACLM*SHVQIQSCGLRHLM Trigger: CATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGGAAGAGATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 90 bp | TTTCCAGCGTGTACTCGTATGCGAAGCCACTTATGGCATCTATATTaGTGGTGGCTTTGGTTTTTGCAGCTCCGACAAAGAACGTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: FPACTRMRSHLWHLY*WWLWFLQLRQRTFL Trigger: AAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACACGCTGGAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS GCA 90 bp | TGCGAAGCCACTTATGGCATCTATATTGATGGTGGCTTTGGTTTTTaGAGCTCCGACAAAGAACGTTTCTTTGCCCACCAACTTGAACAT | + |
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Preference number: 5 (lower is better) Translates to: CEATYGIYIDGGFGF*SSDKERFFAHQLEH Trigger: ATGTTCAAGTTGGTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS GCA 90 bp | GTACTTCTTGAGGCTCTTCCCATCAATTTCCAGCGTGTACTCGTATaGGAAGCCACTTATGGCATCTATATTGATGGTGGCTTTGGTTTT | + |
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Preference number: 5 (lower is better) Translates to: VLLEALPINFQRVLV*EATYGIYIDGGFGF Trigger: AAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACACGCTGGAAATTGATGGGAAGAGCCTCAAGAAGTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS-3UTR CAA 90 bp | TCAAGGTTACTGTTGTGGGATGTTAGTGGTTTGGTCCACATTTTATTTTCCATTACGTACACAACCCGCTaGCCTGATGTGGTCCCATGT | + |
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Preference number: 5 (lower is better) Translates to: SRLLLWDVSGLVHILFSITYTTR*PDVVPC Trigger: ACATGGGACCACATCAGGCAAGCGGGTTGTGTACGT...AATGGAAAATAAAATGTGGACCAAACCACTAACATCCCACAACAGTAACCTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CAA 90 bp | AATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGTCCCGAGGATATTGATGGTGGCTTaGGTTTTTGCAGCTCCGACA | + |
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Preference number: 5 (lower is better) Translates to: NMYILNPFNYHSHRRVPRILMVA*VFAAPT Trigger: TGTCGGAGCTGCAAAAACCAAAGCCACCATCAATAT...CCTCGGGACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CAA 90 bp | TCTAACAATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGTCAGGTGCTGGTGGTCTTaGACCTGTTCTCCATGTACT | + |
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Preference number: 5 (lower is better) Translates to: SNNMYILNPFNYHSHRRVRCWWS*TCSPCT Trigger: AGTACATGGAGAACAGGTCAAAGACCACCAGCACCT...GACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATTGTTAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CAA 90 bp | AATATGTACATATTGAACCCATTTAATTACCACAGCCATCGGCGAGTCCCGAGGTGTTCAAATTCAATCTaGTGGACTCCGTCACTTAAT | + |
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Preference number: 5 (lower is better) Translates to: NMYILNPFNYHSHRRVPRCSNSI*WTPSLN Trigger: ATTAAGTGACGGAGTCCACAAGATTGAATTTGAACA...CCTCGGGACTCGCCGATGGCTGTGGTAATTAAATGGGTTCAATATGTACATATT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS-3UTR CAA 90 bp | CAAGGTTACTGTTGTGGGATGTTAGTGGTTTGGTCCACATTTTATTTTCCATTTCTTATGGCATCTATATaGATGGTGGCTTTGGTTTTT | + |
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Preference number: 5 (lower is better) Translates to: QGYCCGMLVVWSTFYFPFLMASI*MVALVF Trigger: AAAAACCAAAGCCACCATCAATATAGATGCCATAAG...AAATGGAAAATAAAATGTGGACCAAACCACTAACATCCCACAACAGTAACCTTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035038.8 |
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| CDS GCA 72 bp | CTCTCAGGTCCTCGCCATCCAGGCGCAGCACCCAGGTaGTGGTGGTCTTTGACCTGTTCTCCATGTACTTCT | + |
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Preference number: 6 (lower is better) Translates to: LSGPRHPGAAPR*WWSLTCSPCTS Trigger: AGAAGTACATGGAGAACAGGTCAAAGACCACCAGCACCTGGGTGCTGCGCCTGGATGGCGAGGACCTGAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CCA 72 bp | CCTTCCCATCCACGTACACAACCCGCTTGCCTGATGTaGTCCCATGTTCAAATTCAATCTTGTGGACTCCGT | + |
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Preference number: 6 (lower is better) Translates to: PSHPRTQPACLM*SHVQIQSCGLR Trigger: ACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 72 bp | CTCTTCCTTCCCATCCACGTACACAACCCGCTTGCCTaGTGTGGTCCCATGTTCAAATTCAATCTTGTGGAC | + |
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Preference number: 6 (lower is better) Translates to: LFLPIHVHNPLA*CGPMFKFNLVD Trigger: GTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGGAAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 72 bp | TCACAGCTTTTATGTAACAGCCGTGGTTCCCAACGCTaGAGTGCGTCTCAGTCCCATCATCTACAAACTCGC | + |
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Preference number: 6 (lower is better) Translates to: SQLLCNSRGSQR*SASQSHHLQTR Trigger: GCGAGTTTGTAGATGATGGGACTGAGACGCACTTCAGCGTTGGGAACCACGGCTGTTACATAAAAGCTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 72 bp | TGCTGGTGGTCTTTGACCTGTTCTCCATGTACTTCTTaGGGCTCTTCCCATCAATTTCCAGCGTGTACTCGT | + |
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Preference number: 6 (lower is better) Translates to: CWWSLTCSPCTS*GSSHQFPACTR Trigger: ACGAGTACACGCTGGAAATTGATGGGAAGAGCCTCAAGAAGTACATGGAGAACAGGTCAAAGACCACCAGCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS GCA 72 bp | GAGGCTCTTCCCATCAATTTCCAGCGTGTACTCGTATaGGAAGCCACTTATGGCATCTATATTGATGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: EALPINFQRVLV*EATYGIYIDGG Trigger: GCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACACGCTGGAAATTGATGGGAAGAGCCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 90 bp | TACACAACCCGCTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTaGTGGACTCCGTCACTTAATGCTACGTCCCAAACAGCTACGAGA | + |
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Preference number: 6 (lower is better) Translates to: YTTRLPDVVPCSNSI*WTPSLNATSQTATR Trigger: TCTCGTAGCTGTTTGGGACGTAGCATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 72 bp | CCATCATCTACAAACTCGCCCGCTGTCTCCATTTTCTaGCCATTGCACCATACGTCCATAGTGTCTTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: PSSTNSPAVSIF*PLHHTSIVSFS Trigger: GGAAAAAGACACTATGGACGTATGGTGCAATGGTCAGAAAATGGAGACAGCGGGCGAGTTTGTAGATGATGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CCA 72 bp | AGCTCTGGGATTTCCCTGTTATCCACAATGAGGGTATaGATAATCCCTTCTTTCCTCTTTCCGCTGCTCACA | + |
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Preference number: 6 (lower is better) Translates to: SSGISLLSTMRV*IIPSFLFPLLT Trigger: TGTGAGCAGCGGAAAGAGGAAAGAAGGGATTATCCATACCCTCATTGTGGATAACAGGGAAATCCCAGAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 |
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| CDS CAA 72 bp | CGCTTGCCTGATGTGGTCCCATGTTCAAATTCAATCTaGTGGACTCCGTCACTTAATGCTACGTCCCAAACA | + |
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Preference number: 6 (lower is better) Translates to: RLPDVVPCSNSI*WTPSLNATSQT Trigger: TGTTTGGGACGTAGCATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 72 bp | CTTATCTCTTCCTTCCCATCCACGTACACAACCCGCTaGCCTGATGTGGTCCCATGTTCAAATTCAATCTTG | + |
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Preference number: 6 (lower is better) Translates to: LISSFPSTYTTR*PDVVPCSNSIL Trigger: CAAGATTGAATTTGAACATGGGACCACATCAGGCAAGCGGGTTGTGTACGTGGATGGGAAGGAAGAGATAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 90 bp | TACTCGTATGCGAAGCCACTTATGGCATCTATATTGATGGTGGCTTaGGTTTTTGCAGCTCCGACAAAGAACGTTTCTTTGCCCACCAAC | + |
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Preference number: 6 (lower is better) Translates to: YSYAKPLMASILMVA*VFAAPTKNVSLPTN Trigger: GTTGGTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CCA 72 bp | TTGCCTGATGTGGTCCCATGTTCAAATTCAATCTTGTaGACTCCGTCACTTAATGCTACGTCCCAAACAGCT | + |
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Preference number: 6 (lower is better) Translates to: LPDVVPCSNSIL*TPSLNATSQTA Trigger: AGCTGTTTGGGACGTAGCATTAAGTGACGGAGTCCACAAGATTGAATTTGAACATGGGACCACATCAGGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 72 bp | GTGTACTCGTATGCGAAGCCACTTATGGCATCTATATaGATGGTGGCTTTGGTTTTTGCAGCTCCGACAAAG | + |
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Preference number: 6 (lower is better) Translates to: VYSYAKPLMASI*MVALVFAAPTK Trigger: CTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 90 bp | TTGATGGTGGCTTTGGTTTTTGCAGCTCCGACAAAGAACGTTTCTTaGCCCACCAACTTGAACATCCACTCTCTTCTTATCTCTTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: LMVALVFAAPTKNVS*PTNLNIHSLLISSF Trigger: GAAGGAAGAGATAAGAAGAGAGTGGATGTTCAAGTTGGTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 90 bp | ATTTCCAGCGTGTACTCGTATGCGAAGCCACTTATGGCATCTATATaGATGGTGGCTTTGGTTTTTGCAGCTCCGACAAAGAACGTTTCT | + |
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Preference number: 6 (lower is better) Translates to: ISSVYSYAKPLMASI*MVALVFAAPTKNVS Trigger: AGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACACGCTGGAAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS TCA 72 bp | TGTACTCGTATGCGAAGCCACTTATGGCATCTATATTaGTGGTGGCTTTGGTTTTTGCAGCTCCGACAAAGA | + |
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Preference number: 6 (lower is better) Translates to: CTRMRSHLWHLY*WWLWFLQLRQR Trigger: TCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGCATACGAGTACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 72 bp | GCTTTGGTTTTTGCAGCTCCGACAAAGAACGTTTCTTaGCCCACCAACTTGAACATCCACTCTCTTCTTATC | + |
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Preference number: 6 (lower is better) Translates to: ALVFAAPTKNVS*PTNLNIHSLLI Trigger: GATAAGAAGAGAGTGGATGTTCAAGTTGGTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS CAA 72 bp | GCGAAGCCACTTATGGCATCTATATTGATGGTGGCTTaGGTTTTTGCAGCTCCGACAAAGAACGTTTCTTTG | + |
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Preference number: 6 (lower is better) Translates to: AKPLMASILMVA*VFAAPTKNVSL Trigger: CAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGTGGCTTCGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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| CDS GCA 72 bp | ACTTATGGCATCTATATTGATGGTGGCTTTGGTTTTTaGAGCTCCGACAAAGAACGTTTCTTTGCCCACCAA | + |
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Preference number: 6 (lower is better) Translates to: TYGIYIDGGFGF*SSDKERFFAHQ Trigger: TTGGTGGGCAAAGAAACGTTCTTTGTCGGAGCTGCAAAAACCAAAGCCACCATCAATATAGATGCCATAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000035038.8 ENSMUST00000112911.9 ENSMUST00000185472.2 |
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