Pregenerated sensors for FAHD2A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027371Ensembl transcript IDs: ENSMUST00000028848.4
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | AGCTGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACCCCCTGGGTAAAGAGTaGCAAACTGGGAGACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: SWVGAEVPPCVKSSANRDPLGKE*QTGRPR Trigger: CCTGGGTCTCCCAGTTTGTCACTCTTTACCCAGGGG...GTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCAGCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CCA 90 bp | TGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCGGGATGACAGGCAGCTaGGTAGCCAGGGCTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: WVGAEVPPCVKSSANRDTGMTGS*VARALL Trigger: AAGAAGAGCCCTGGCTACCCAGCTGCCTGTCATCCC...GGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CCA 90 bp | GGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCAAAACATGCCAACACCTaGAGGCGTCCCAGTCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GWEQKSRLVSSPVLTGTPKHANT*RRPSQE Trigger: CTCCTGACTGGGACGCCTCCAGGTGTTGGCATGTTT...TGGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR GCA 90 bp | TGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCCTCTTCCAGGTGAGGTaGCTGGAACTGTACCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: WVGAEVPPCVKSSANRDTLFQVR*LELYQS Trigger: AGACTGGTACAGTTCCAGGCACCTCACCTGGAAGAG...GGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR GCA 90 bp | GGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCAAGGGTGGTCTCTCCTTaGTCCAGGAACTGCACCATT | + |
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Preference number: 4 (lower is better) Translates to: GWEQKSRLVSSPVLTGTPRVVSP*SRNCTI Trigger: AATGGTGCAGTTCCTGGAGCAAGGAGAGACCACCCT...TGGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CCA 90 bp | TGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCCAGGAGGAGGTCCCCTaGGTAAAGAGTGACAAACTG | + |
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Preference number: 4 (lower is better) Translates to: WVGAEVPPCVKSSANRDTQEEVP*VKSDKL Trigger: CAGTTTGTCACTCTTTACCCAGGGGACCTCCTCCTG...GGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CCA 90 bp | AGCTGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACTTCCTTGCTCTCTGGTaGGAGGATGATCTCATCGTA | + |
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Preference number: 4 (lower is better) Translates to: SWVGAEVPPCVKSSANRDFLALW*EDDLIV Trigger: TACGATGAGATCATCCTCCCACCAGAGAGCAAGGAA...GTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR GCA 90 bp | AGCTGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACTTCTTGGCAGTGGTCTaGATAATTCAAGCCCACACA | + |
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Preference number: 4 (lower is better) Translates to: SWVGAEVPPCVKSSANRDFLAVV*IIQAHT Trigger: TGTGTGGGCTTGAATTATGCAGACCACTGCCAAGAA...GTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR TCA 90 bp | AGAAAATTTATTTCCAAGGCCTACCTAAGAGCAGCCTCAAGTGGACAGGGCCAGCTTCATCGCCCTTCTTaGGGAAGACAGGAGGCTTCC | + |
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Preference number: 4 (lower is better) Translates to: RKFISKAYLRAASSGQGQLHRPS*GRQEAS Trigger: GGAAGCCTCCTGTCTTCCTCAAGAAGGGCGATGAAG...CTGGCCCTGTCCACTTGAGGCTGCTCTTAGGTAGGCCTTGGAAATAAATTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR GCA 90 bp | AACTCTGAGAGAAAATTTATTTCCAAGGCCTACCTAAGAGCAGCCTCAAGTGGATTTCCATTTCTCATTTaGCAGTCCCGAGCACTCACA | + |
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Preference number: 4 (lower is better) Translates to: NSERKFISKAYLRAASSGFPFLI*QSRALT Trigger: TGTGAGTGCTCGGGACTGGCAAATGAGAAATGGAAA...TCCACTTGAGGCTGCTCTTAGGTAGGCCTTGGAAATAAATTTTCTCTCAGAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | TGGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCCCCACACATATCACCTaGTCTGGCCGGGTGACAGGG | + |
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Preference number: 5 (lower is better) Translates to: WVGAEVPPCVKSSANRDTPTHIT*SGRVTG Trigger: CCCTGTCACCCGGCCAGACAAGGTGATATGTGTGGG...GGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | GGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCACATGTTTCTGGAGGGTaGACAGGGCCTCTTCTGAAC | + |
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Preference number: 5 (lower is better) Translates to: GWEQKSRLVSSPVLTGTPHVSGG*TGPLLN Trigger: GTTCAGAAGAGGCCCTGTCAACCCTCCAGAAACATG...TGGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | GGGTGGGAGCAGAAGTCCCGCCTTGTGTCAAGTCCAGTGCTAACAGGGACACCAACTTCATCGCCCTTCTaGAGGAAGACAGGAGGCTTC | + |
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Preference number: 5 (lower is better) Translates to: GWEQKSRLVSSPVLTGTPTSSPF*RKTGGF Trigger: GAAGCCTCCTGTCTTCCTCAAGAAGGGCGATGAAGT...TGGTGTCCCTGTTAGCACTGGACTTGACACAAGGCGGGACTTCTGCTCCCACCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS GCA 90 bp | GATGGGGCTCTTGGGCACCCGCACATTCTGTTCTTGGCAGTGGTCTaGATAATTCAAGCCCACACATATCACCTTGTCTGGCCGGGTGAC | + |
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Preference number: 5 (lower is better) Translates to: DGALGHPHILFLAVV*IIQAHTYHLVWPGD Trigger: GTCACCCGGCCAGACAAGGTGATATGTGTGGGCTTGAATTATGCAGACCACTGCCAAGAACAGAATGTGCGGGTGCCCAAGAGCCCCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | AGAAAATTTATTTCCAAGGCCTACCTAAGAGCAGCCTCAAGTGGACAGGGCCAGAAGGGTGGTCTCTCCTaGCTCCAGGAACTGCACCAT | + |
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Preference number: 5 (lower is better) Translates to: RKFISKAYLRAASSGQGQKGGLS*LQELHH Trigger: ATGGTGCAGTTCCTGGAGCAAGGAGAGACCACCCTT...CTGGCCCTGTCCACTTGAGGCTGCTCTTAGGTAGGCCTTGGAAATAAATTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | GAGAAAATTTATTTCCAAGGCCTACCTAAGAGCAGCCTCAAGTGGACAGGGCCATCCCAGTCAACTTCCTaGCTCTCTGGTGGGAGGATG | + |
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Preference number: 5 (lower is better) Translates to: EKIYFQGLPKSSLKWTGPSQSTS*LSGGRM Trigger: CATCCTCCCACCAGAGAGCAAGGAAGTTGACTGGGA...TGGCCCTGTCCACTTGAGGCTGCTCTTAGGTAGGCCTTGGAAATAAATTTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS-3UTR CAA 90 bp | AACTCTGAGAGAAAATTTATTTCCAAGGCCTACCTAAGAGCAGCCTCAAGTGGACTTTCCATTTCTCATTaGCCAGTCCCGAGCACTCAC | + |
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Preference number: 5 (lower is better) Translates to: NSERKFISKAYLRAASSGLSISH*PVPSTH Trigger: GTGAGTGCTCGGGACTGGCAAATGAGAAATGGAAAG...TCCACTTGAGGCTGCTCTTAGGTAGGCCTTGGAAATAAATTTTCTCTCAGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS TCA 72 bp | AATTCAAGCCCACACATATCACCTTGTCTGGCCGGGTaGCAGGGGCCAAGAAGGTCACCTGTGACCGAGGGA | + |
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Preference number: 6 (lower is better) Translates to: NSSPHISPCLAG*QGPRRSPVTEG Trigger: TCCCTCGGTCACAGGTGACCTTCTTGGCCCCTGTCACCCGGCCAGACAAGGTGATATGTGTGGGCTTGAATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS CCA 72 bp | GGTGAGGTGCCTGGAACTGTACCAGTCTCATGTTTCTaGAGGGTTGACAGGGCCTCTTCTGAACCTGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: GEVPGTVPVSCF*RVDRASSEPAA Trigger: TGCTGCAGGTTCAGAAGAGGCCCTGTCAACCCTCCAGAAACATGAGACTGGTACAGTTCCAGGCACCTCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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| CDS GCA 72 bp | CTTGGGCACCCGCACATTCTGTTCTTGGCAGTGGTCTaGATAATTCAAGCCCACACATATCACCTTGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: LGHPHILFLAVV*IIQAHTYHLVW Trigger: CCAGACAAGGTGATATGTGTGGGCTTGAATTATGCAGACCACTGCCAAGAACAGAATGTGCGGGTGCCCAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028848.4 |
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