Pregenerated sensors for FAHD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045316Ensembl transcript IDs: ENSMUST00000049642.6
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGGCTGCAGCAAGAGCTCACTTAACAAAATTCTTATCTGGCTTTaGGGTGGAGGACTTTCCCAAGTAAAAATCAACTGGAGTGCTCTG | + |
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Preference number: 1 (lower is better) Translates to: QGCSKSSLNKILIWL*GGGLSQVKINWSAL Trigger: CAGAGCACTCCAGTTGATTTTTACTTGGGAAAGTCCTCCACCTCAAAGCCAGATAAGAATTTTGTTAAGTGAGCTCTTGCTGCAGCCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR GCA 90 bp | CTGGCTTTGAGGTGGAGGACTTTCCCAAGTAAAAATCAACTGGAGTaGTCTGTACAAACAGCTTTCCTAAAGGCCAACAGCATTAATGAG | + |
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Preference number: 1 (lower is better) Translates to: LALRWRTFPSKNQLE*SVQTAFLKANSINE Trigger: CTCATTAATGCTGTTGGCCTTTAGGAAAGCTGTTTGTACAGAGCACTCCAGTTGATTTTTACTTGGGAAAGTCCTCCACCTCAAAGCCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR-3UTR GCA 90 bp | CTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCACTTAGTCATTTATTTCCCTTaGTTCTGTCTCCCTTCCCCT | + |
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Preference number: 2 (lower is better) Translates to: LRSHTQSKQGRAAARAHLVIYFP*FCLPSP Trigger: AGGGGAAGGGAGACAGAAGCAAGGGAAATAAATGAC...TAAGTGAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR-3UTR CCA 90 bp | CCAAACTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCCAAGTAAAAATCAACTaGAGTGCTCTGTACAAACAG | + |
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Preference number: 2 (lower is better) Translates to: PNSEATPKVNKAGLQQELQVKIN*SALYKQ Trigger: CTGTTTGTACAGAGCACTCCAGTTGATTTTTACTTG...GAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAGTTTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR-3UTR CCA 90 bp | CTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCACTTATTAACATTGCCCTCTTaGGAAGCATTCTATATCCTT | + |
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Preference number: 2 (lower is better) Translates to: LRSHTQSKQGRAAARAHLLTLPS*EAFYIL Trigger: AAGGATATAGAATGCTTCCCAAGAGGGCAATGTTAA...TAAGTGAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR-3UTR CAA 90 bp | CTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCACTTATTTAACATTGCCCTCTaGGGAAGCATTCTATATCCT | + |
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Preference number: 3 (lower is better) Translates to: LRSHTQSKQGRAAARAHLFNIAL*GSILYP Trigger: AGGATATAGAATGCTTCCCAAGAGGGCAATGTTAAA...TAAGTGAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR GCA 72 bp | AGGTGGAGGACTTTCCCAAGTAAAAATCAACTGGAGTaGTCTGTACAAACAGCTTTCCTAAAGGCCAACAGC | + |
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Preference number: 3 (lower is better) Translates to: RWRTFPSKNQLE*SVQTAFLKANS Trigger: GCTGTTGGCCTTTAGGAAAGCTGTTTGTACAGAGCACTCCAGTTGATTTTTACTTGGGAAAGTCCTCCACCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR TCA 72 bp | AGCAAGAGCTCACTTAACAAAATTCTTATCTGGCTTTaGGGTGGAGGACTTTCCCAAGTAAAAATCAACTGG | + |
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Preference number: 3 (lower is better) Translates to: SKSSLNKILIWL*GGGLSQVKINW Trigger: CCAGTTGATTTTTACTTGGGAAAGTCCTCCACCTCAAAGCCAGATAAGAATTTTGTTAAGTGAGCTCTTGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| 3UTR-3UTR CAA 90 bp | ACAGCATTAATGAGTTACTTCCTTTGCACTTTTAAGTCTGGAGGTATAGACTTCAAGTTTAGTTTAACATaGCCCTCTTGGGAAGCATTC | + |
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Preference number: 3 (lower is better) Translates to: TALMSYFLCTFKSGGIDFKFSLT*PSWEAF Trigger: GAATGCTTCCCAAGAGGGCAATGTTAAACTAAACTT...GAAGTCTATACCTCCAGACTTAAAAGTGCAAAGGAAGTAACTCATTAATGCTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR GCA 90 bp | CCAAACTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCCCTCGTGGTGGAGGTTaGGGCAGTAAGCGGGCATTA | + |
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Preference number: 4 (lower is better) Translates to: PNSEATPKVNKAGLQQELPRGGG*GSKRAL Trigger: TAATGCCCGCTTACTGCCGCAACCTCCACCACGAGG...GAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAGTTTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR GCA 90 bp | CCAAACTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCTCGCTTCACCACGCTTaGCCAGAAGCACTCCCAACT | + |
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Preference number: 4 (lower is better) Translates to: PNSEATPKVNKAGLQQELSLHHA*PEALPT Trigger: AGTTGGGAGTGCTTCTGGGCAAGCGTGGTGAAGCGA...GAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAGTTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CCA 90 bp | CTCAGAAGCCACACCCAAAGTAAACAAGGCAGGGCTGCAGCAAGAGCTCACTTACCTCCTGCACATCTCTaGCAGTCATGTCCAGGCACA | + |
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Preference number: 4 (lower is better) Translates to: LRSHTQSKQGRAAARAHLPPAHL*QSCPGT Trigger: TGTGCCTGGACATGACTGCCAGAGATGTGCAGGAGG...TAAGTGAGCTCTTGCTGCAGCCCTGCCTTGTTTACTTTGGGTGTGGCTTCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CCA 90 bp | CCAACAGCATTAATGAGTTACTTCCTTTGCACTTTTAAGTCTGGAGGTATAGACCGGGAGCGTACGCGGTaGACGGCTTCAGGAAAAGCA | + |
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Preference number: 4 (lower is better) Translates to: PTALMSYFLCTFKSGGIDRERTR*TASGKA Trigger: TGCTTTTCCTGAAGCCGTCCACCGCGTACGCTCCCG...GTCTATACCTCCAGACTTAAAAGTGCAAAGGAAGTAACTCATTAATGCTGTTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CCA 90 bp | TTCGTTGTTCCTGTTTCTATTTCAGTCCCAGGTCTTTTAGATCACGTTATTTTTCGGCCACGTAGTCCATaGCTGCAGCCTCCGGGATCG | + |
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Preference number: 4 (lower is better) Translates to: FVVPVSISVPGLLDHVIFRPRSP*LQPPGS Trigger: CGATCCCGGAGGCTGCAGCCATGGACTACGTGGCCG...AAAAATAACGTGATCTAAAAGACCTGGGACTGAAATAGAAACAGGAACAACGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR GCA 90 bp | ACAGCATTAATGAGTTACTTCCTTTGCACTTTTAAGTCTGGAGGTATAGACTTCCACGTAGTCCATGGCTaGAGCCTCCGGGATCGCTTC | + |
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Preference number: 4 (lower is better) Translates to: TALMSYFLCTFKSGGIDFHVVHG*SLRDRF Trigger: GAAGCGATCCCGGAGGCTGCAGCCATGGACTACGTG...GAAGTCTATACCTCCAGACTTAAAAGTGCAAAGGAAGTAACTCATTAATGCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR GCA 90 bp | GTACAAACAGCTTTCCTAAAGGCCAACAGCATTAATGAGTTACTTCCTTTGCACTTCTTGCACTCCTCCTaGACATCTCTGGCAGTCATG | + |
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Preference number: 4 (lower is better) Translates to: VQTAFLKANSINELLPLHFLHSS*TSLAVM Trigger: CATGACTGCCAGAGATGTGCAGGAGGAGTGCAAGAA...GTGCAAAGGAAGTAACTCATTAATGCTGTTGGCCTTTAGGAAAGCTGTTTGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR TCA 90 bp | TTCGTTGTTCCTGTTTCTATTTCAGTCCCAGGTCTTTTAGATCACGTTATTTTTGGAAAAGATCATAGATaGTGTTTTGCCCTCCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: FVVPVSISVPGLLDHVIFGKDHR*CFALLP Trigger: AGGCAGGAGGGCAAAACATCATCTATGATCTTTTCC...AAAAATAACGTGATCTAAAAGACCTGGGACTGAAATAGAAACAGGAACAACGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS GCA 90 bp | CCACGTAGTCCATGGCTGCAGCCTCCGGGATCGCTTCACCACGCTTaGCCAGAAGCACTCCCAACTCCACCTCGTGGTGGAGGTTGCGGC | + |
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Preference number: 5 (lower is better) Translates to: PRSPWLQPPGSLHHA*PEALPTPPRGGGCG Trigger: GCCGCAACCTCCACCACGAGGTGGAGTTGGGAGTGCTTCTGGGCAAGCGTGGTGAAGCGATCCCGGAGGCTGCAGCCATGGACTACGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS GCA 90 bp | CACGCTTGCCCAGAAGCACTCCCAACTCCACCTCGTGGTGGAGGTTaGGGCAGTAAGCGGGCATTAACACCGGTGAGCCCTCGGGAGCGT | + |
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Preference number: 5 (lower is better) Translates to: HACPEALPTPPRGGG*GSKRALTPVSPRER Trigger: ACGCTCCCGAGGGCTCACCGGTGTTAATGCCCGCTTACTGCCGCAACCTCCACCACGAGGTGGAGTTGGGAGTGCTTCTGGGCAAGCGTG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS CCA 90 bp | AGTAAGCGGGCATTAACACCGGTGAGCCCTCGGGAGCGTACGCGGTaGACGGCTTCAGGAAAAGCACAGGCTCACTCAGCACGGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: SKRALTPVSPRERTR*TASGKAQAHSARCC Trigger: GCAGCACCGTGCTGAGTGAGCCTGTGCTTTTCCTGAAGCCGTCCACCGCGTACGCTCCCGAGGGCTCACCGGTGTTAATGCCCGCTTACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CAA 90 bp | CCAACAGCATTAATGAGTTACTTCCTTTGCACTTTTAAGTCTGGAGGTATAGACAGCTCTCCGTTGACCTaGAGCCACAGTCTTAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: PTALMSYFLCTFKSGGIDSSPLT*SHSLRA Trigger: TGCCCTAAGACTGTGGCTCAAGGTCAACGGAGAGCT...GTCTATACCTCCAGACTTAAAAGTGCAAAGGAAGTAACTCATTAATGCTGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CAA 90 bp | TCTATATCCTTTAGCTTCGTTGTTCCTGTTTCTATTTCAGTCCCAGGTCTTTTATGCCTGAGCTCTCCGTaGACCTTGAGCCACAGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SISFSFVVPVSISVPGLLCLSSP*TLSHSL Trigger: AAGACTGTGGCTCAAGGTCAACGGAGAGCTCAGGCA...TAAAAGACCTGGGACTGAAATAGAAACAGGAACAACGAAGCTAAAGGATATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS-3UTR CAA 90 bp | AATCAACTGGAGTGCTCTGTACAAACAGCTTTCCTAAAGGCCAACAGCATTAATTCTGATCTTTTCACCTaGAACCTCATACTAACCACC | + |
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Preference number: 5 (lower is better) Translates to: NQLECSVQTAFLKANSINSDLFT*NLILTT Trigger: GGTGGTTAGTATGAGGTTCAAGGTGAAAAGATCAGA...ATTAATGCTGTTGGCCTTTAGGAAAGCTGTTTGTACAGAGCACTCCAGTTGATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS GCA 72 bp | CCATGGCTGCAGCCTCCGGGATCGCTTCACCACGCTTaGCCAGAAGCACTCCCAACTCCACCTCGTGGTGGA | + |
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Preference number: 6 (lower is better) Translates to: PWLQPPGSLHHA*PEALPTPPRGG Trigger: TCCACCACGAGGTGGAGTTGGGAGTGCTTCTGGGCAAGCGTGGTGAAGCGATCCCGGAGGCTGCAGCCATGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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| CDS CCA 72 bp | GCATTAACACCGGTGAGCCCTCGGGAGCGTACGCGGTaGACGGCTTCAGGAAAAGCACAGGCTCACTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: ALTPVSPRERTR*TASGKAQAHSA Trigger: TGCTGAGTGAGCCTGTGCTTTTCCTGAAGCCGTCCACCGCGTACGCTCCCGAGGGCTCACCGGTGTTAATGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049642.6 |
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