Pregenerated sensors for FADS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024665Ensembl transcript IDs: ENSMUST00000025567.9, ENSMUST00000235937.2
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | TGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTGAGCCTCACTaGGTACCCCCAACAGCCCTCCTGAGACCTCACACCCTACCCTGT | + |
Preference number: 1 (lower is better) Translates to: CPQPPLPSTLLLEPH*VPPTALLRPHTLPC Trigger: ACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 90 bp | ATTTCCCTCATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTaGGCCTCACTGGGTACCCCCAACAGCCCTCCTGAGACCTCACAC | + |
Preference number: 1 (lower is better) Translates to: ISLMPSASSSLYTPA*ASLGTPNSPPETSH Trigger: GTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCATGAGGGAAAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 90 bp | TTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTaGGCCCGCACAAGGAACACTCCCTTTGGTTTCTGGAGTTGGGTA | + |
Preference number: 1 (lower is better) Translates to: FQAGQSLLQPGYCLS*ARTRNTPFGFWSWV Trigger: TACCCAACTCCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 90 bp | GAAGCCAAGTGCTGGCTAGATTGGCAGCTCTATCCTGGGGAGAGCTaGTCAGGGGCTCTCCTGCAAGGTCCACATTCTCTAGACCAAGCA | + |
Preference number: 1 (lower is better) Translates to: EAKCWLDWQLYPGES*SGALLQGPHSLDQA Trigger: TGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 90 bp | CAGGAATCTTTAGGTGCAGAAGTTAAAGGCAGACGCGTAACCACCTaGGACAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGG | + |
Preference number: 1 (lower is better) Translates to: QESLGAEVKGRRVTT*DNHLSGSLGEGTGR Trigger: CCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTGTCTCAGGTGGTTACGCGTCTGCCTTTAACTTCTGCACCTAAAGATTCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 90 bp | CTACACTCCTGCTTGAGCCTCACTGGGTACCCCCAACAGCCCTCCTaGGACCTCACACCCTACCCTGTTTTTCCTGCCTTTCTGATAGCA | + |
Preference number: 1 (lower is better) Translates to: LHSCLSLTGYPQQPS*DLTPYPVFPAFLIA Trigger: TGCTATCAGAAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 90 bp | CCCCCAACAGCCCTCCTGAGACCTCACACCCTACCCTGTTTTTCCTaGCTTTCTGATAGCAGCAACCTCAAGCCACAGCGTATACTGTGG | + |
Preference number: 1 (lower is better) Translates to: PPTALLRPHTLPCFS*LSDSSNLKPQRILW Trigger: CCACAGTATACGCTGTGGCTTGAGGTTGCTGCTATCAGAAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 90 bp | TTCTCTGCCTCTGTGGAACAATACCAACTGGTCTCTCTTGGCTCATaGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGCCTTTTCCTC | + |
Preference number: 1 (lower is better) Translates to: FSASVEQYQLVSLGS*SPRGLALCRPSLFL Trigger: GAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGAGGCAGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 90 bp | CTTTCTGATAGCAGCAACCTCAAGCCACAGCGTATACTGTGGCCTTaGAGGCGAAGCCTAGCTCTACCTGAAGGGCAAGGGACATCTAGT | + |
Preference number: 1 (lower is better) Translates to: LSDSSNLKPQRILWP*RRSLALPEGQGTSS Trigger: ACTAGATGTCCCTTGCCCTTCAGGTAGAGCTAGGCTTCGCCTTCAAGGCCACAGTATACGCTGTGGCTTGAGGTTGCTGCTATCAGAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 90 bp | GGGCTTGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTaGTTGGTTAGTCCAGTTAGACCTCAGAATGACATAGCGTGGGTC | + |
Preference number: 1 (lower is better) Translates to: GLALCRPSLFLQFTY*LVSPVRPQNDIAWV Trigger: GACCCACGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 90 bp | AGAACTTTTCCTTGGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTaGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACT | + |
Preference number: 1 (lower is better) Translates to: RTFPWSSKSKVVLGS*KEASSTNPSHGKDT Trigger: AGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 90 bp | TTCTGGAGTTGGGTAGATGATGAAATAGAACCTGTACAAACCCTATaGTCTGGAGTTGTGATGGTGGGCATGAGAGAACTTTTCCTTGGT | + |
Preference number: 1 (lower is better) Translates to: FWSWVDDEIEPVQTL*SGVVMVGMRELFLG Trigger: ACCAAGGAAAAGTTCTCTCATGCCCACCATCACAACTCCAGACCATAGGGTTTGTACAGGTTCTATTTCATCATCTACCCAACTCCAGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCGCCCTCCCCTCCCTCTaGCTGTCACCCAACAGTGCC | + |
Preference number: 2 (lower is better) Translates to: LLQGPHSLDQASGTGQRIALPSL*LSPNSA Trigger: GGCACTGTTGGGTGACAGCCAGAGGGAGGGGAGGGC...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CAA 90 bp | CCTATGGGTTCTCTGCCTCTGTGGAACAATACCAACTGGTCTCTCTaGGCTCATGGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGCC | + |
Preference number: 2 (lower is better) Translates to: PMGSLPLWNNTNWSL*AHGVLEGLPCAGPA Trigger: GGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGAGGCAGAGAACCCATAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCACCTCTCCGGCTCTCTaGGAGAAGGGACTGGGAGGC | + |
Preference number: 2 (lower is better) Translates to: SLRWSLAAGKKPQVPIPATSPAL*EKGLGG Trigger: GCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGT...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR GCA 90 bp | CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCTGTCACCCAACAGTaGCCCTTTCCCGAGGGTGCC | + |
Preference number: 2 (lower is better) Translates to: LHENGVGRGEGRGITRKDAVTQQ*PFPEGA Trigger: GGCACCCTCGGGAAAGGGGCACTGTTGGGTGACAGC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | TTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCTGTAGAGCCAAGTCCTaGACTCCTGTTCCACAGGCC | + |
Preference number: 2 (lower is better) Translates to: LAAGKKPQVPIPAMGKTLCRAKS*TPVPQA Trigger: GGCCTGTGGAACAGGAGTCCAGGACTTGGCTCTACA...GAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CAA 90 bp | CTTGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGTaGGTTAGTCCAGTTAGACCTCAGAATGACATAGCGTGGGTCCCC | + |
Preference number: 2 (lower is better) Translates to: LALCRPSLFLQFTYW*VSPVRPQNDIAWVP Trigger: GGGGACCCACGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CAA 90 bp | AACAATACCAACTGGTCTCTCTTGGCTCATGGAGTCCTAGAGGGCTaGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGT | + |
Preference number: 2 (lower is better) Translates to: NNTNWSLLAHGVLEG*PCAGPAFSSSLHIG Trigger: ACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCTACCAATCCCAGCCATaGGAAAGACACTCAGAACGA | + |
Preference number: 2 (lower is better) Translates to: LLQGPHSLDQASGTGQRIYQSQP*ERHSER Trigger: TCGTTCTGAGTGTCTTTCCCATGGCTGGGATTGGTA...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGTTTGGTTTCTGGAGTTaGGTAGATGATGAAATAGAA | + |
Preference number: 2 (lower is better) Translates to: VPGWSVPPSTWLLPLLSPFGFWS*VDDEIE Trigger: TTCTATTTCATCATCTACCCAACTCCAGAAACCAAA...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR GCA 90 bp | CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAAAAAGAAGCCAAGTaGTGGCTAGATTGGCAGCTC | + |
Preference number: 2 (lower is better) Translates to: HLVKMDCPKTQPALCYSPQKEAK*WLDWQL Trigger: GAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR TCA 90 bp | TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTAATGTCTTCACCCAAATaGCTACACCATAATGCTGAC | + |
Preference number: 2 (lower is better) Translates to: CPKTQPALCYSPIKKNSVMSSPK*LHHNAD Trigger: GTCAGCATTATGGTGTAGTCATTTGGGTGAAGACAT...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CCA 90 bp | CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACACTCCCTTTGGTTTCTaGAGTTGGGTAGATGATGAA | + |
Preference number: 2 (lower is better) Translates to: LFLQFTYWLVSPVRPQNDTPFGF*SWVDDE Trigger: TTCATCATCTACCCAACTCCAGAAACCAAAGGGAGT...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 72 bp | CCTCATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTaGTTGAGCCTCACTGGGTACCCCCAACAGCCCTCC | + |
Preference number: 3 (lower is better) Translates to: PHALSLLFPLHS*LSLTGYPQQPS Trigger: GGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCATGAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 72 bp | ATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTaGGCCTCACTGGGTACCCCCAACAGCCCTCCTGAG | + |
Preference number: 3 (lower is better) Translates to: MPSASSSLYTPA*ASLGTPNSPPE Trigger: CTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | AGAAGCCAAGTGCTGGCTAGATTGGCAGCTCTATCCTaGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCC | + |
Preference number: 3 (lower is better) Translates to: RSQVLARLAALS*GELLRGSPARS Trigger: GGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR-3UTR CAA 90 bp | GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGAGTCTAAGGTGGTCCTaGGCAGCTGGAAAGAAGCCT | + |
Preference number: 3 (lower is better) Translates to: VPGWSVPPSTWLLPLLSPSLRWS*AAGKKP Trigger: AGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 72 bp | GGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTaGGCCCGCACAAGGAACACTCCCTTTGGTTTCTGG | + |
Preference number: 3 (lower is better) Translates to: GQSLLQPGYCLS*ARTRNTPFGFW Trigger: CCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 72 bp | TGCTTGAGCCTCACTGGGTACCCCCAACAGCCCTCCTaGGACCTCACACCCTACCCTGTTTTTCCTGCCTTT | + |
Preference number: 3 (lower is better) Translates to: CLSLTGYPQQPS*DLTPYPVFPAF Trigger: AAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | TCTGTGGAACAATACCAACTGGTCTCTCTTGGCTCATaGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGC | + |
Preference number: 3 (lower is better) Translates to: SVEQYQLVSLGS*SPRGLALCRPS Trigger: GCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | CACCTGACTGTAGTGGGAGAGGTTAAAGTTCCAGGCTaGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTC | + |
Preference number: 3 (lower is better) Translates to: HLTVVGEVKVPG*SVPPSTWLLPL Trigger: GAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAACTTTAACCTCTCCCACTACAGTCAGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | CCTTGGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTaGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGG | + |
Preference number: 3 (lower is better) Translates to: PWSSKSKVVLGS*KEASSTNPSHG Trigger: CCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | GTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGTGCTaGCTAGATTGGCAGCTCTATCCTGGGGAGAGCTGC | + |
Preference number: 3 (lower is better) Translates to: VKTGMSQKEAKC*LDWQLYPGESC Trigger: GCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTGGCTCATCCCTGTCTTTAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 72 bp | TCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGTaGTGGCTAGATTGGCAGCTCTATCCTGGGGAGAGC | + |
Preference number: 3 (lower is better) Translates to: SVKTGMSQKEAK*WLDWQLYPGES Trigger: GCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | TGGAGTTGTGATGGTGGGCATGAGAGAACTTTTCCTTaGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTGG | + |
Preference number: 3 (lower is better) Translates to: WSCDGGHERTFP*SSKSKVVLGSW Trigger: CCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCTCTCATGCCCACCATCACAACTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | TCTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTaGAACTGGCCAGAGGATCTGGAAAAAGATCTGATC | + |
Preference number: 3 (lower is better) Translates to: SPARSTFSRPSI*NWPEDLEKDLI Trigger: GATCAGATCTTTTTCCAGATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR TCA 72 bp | GAAAGACACTCAGAACGAAGCATGTCTTCACCCAAATaGCTACACCATAATGCTGACAGGGAGTGTAGAGCC | + |
Preference number: 3 (lower is better) Translates to: ERHSERSMSSPK*LHHNADRECRA Trigger: GGCTCTACACTCCCTGTCAGCATTATGGTGTAGTCATTTGGGTGAAGACATGCTTCGTTCTGAGTGTCTTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 72 bp | AAAAGTAGAGGCGGGGAACAAGATGATACAAATGACTaGCATCTCCTATGGGTTCTCTGCCTCTGTGGAACA | + |
Preference number: 3 (lower is better) Translates to: KSRGGEQDDTND*HLLWVLCLCGT Trigger: TGTTCCACAGAGGCAGAGAACCCATAGGAGATGGCAGTCATTTGTATCATCTTGTTCCCCGCCTCTACTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | ATGAGAGAACTTTTCCTTGGTCCTCAAAGTCTAAGGTaGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCA | + |
Preference number: 3 (lower is better) Translates to: MRELFLGPQSLR*SLAAGKKPQVP Trigger: TGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCTCTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | GCCCGCACAAGGAACACTCCCTTTGGTTTCTGGAGTTaGGTAGATGATGAAATAGAACCTGTACAAACCCTA | + |
Preference number: 3 (lower is better) Translates to: ARTRNTPFGFWS*VDDEIEPVQTL Trigger: TAGGGTTTGTACAGGTTCTATTTCATCATCTACCCAACTCCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | GGGGAACAAGATGATACAAATGACTGCCATCTCCTATaGGTTCTCTGCCTCTGTGGAACAATACCAACTGGT | + |
Preference number: 3 (lower is better) Translates to: GEQDDTNDCHLL*VLCLCGTIPTG Trigger: ACCAGTTGGTATTGTTCCACAGAGGCAGAGAACCCATAGGAGATGGCAGTCATTTGTATCATCTTGTTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | CTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTaGTTGGTTAGTCCAGTTAGACCTCAGAATGACATA | + |
Preference number: 3 (lower is better) Translates to: LCRPSLFLQFTY*LVSPVRPQNDI Trigger: TATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CCA 72 bp | TGGGTAGATGATGAAATAGAACCTGTACAAACCCTATaGTCTGGAGTTGTGATGGTGGGCATGAGAGAACTT | + |
Preference number: 3 (lower is better) Translates to: WVDDEIEPVQTL*SGVVMVGMREL Trigger: AAGTTCTCTCATGCCCACCATCACAACTCCAGACCATAGGGTTTGTACAGGTTCTATTTCATCATCTACCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR GCA 72 bp | GTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTaGTACTCTCCTATTAAGAAGAATTCTGTAGGAAAT | + |
Preference number: 3 (lower is better) Translates to: VKMDCPKTQPAL*YSPIKKNSVGN Trigger: ATTTCCTACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGGGGGCTTCAAGAACTTaGCCACGAAGTCCAGGTCCA | + |
Preference number: 4 (lower is better) Translates to: QPPLRLSGRRDWEAEGMGGASRT*PRSPGP Trigger: TGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCC...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG 62% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCTGCCACGGTCCAGGCTaGGCTCCTCTGGGGCCAGCT | + |
Preference number: 4 (lower is better) Translates to: SLRWSLAAGKKPQVPIPACHGPG*APLGPA Trigger: AGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCA...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGGTGCAGGTTGTGACGTaGCATAGTGGGGAAGAGGTG | + |
Preference number: 4 (lower is better) Translates to: VPGWSVPPSTWLLPLLSPVQVVT*HSGEEV Trigger: CACCTCTTCCCCACTATGCCACGTCACAACCTGCAC...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAAAGTCCAGGTCCAGATaGAAGGCACGGAAGGCATCC | + |
Preference number: 4 (lower is better) Translates to: DWQLYPGESCSGALLQGPKSRSR*KARKAS Trigger: GGATGCCTTCCGTGCCTTCCATCTGGACCTGGACTT...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAGGCTTGGCATGGTGTTaGAAATGTCGGTGGTTCCAC | + |
Preference number: 4 (lower is better) Translates to: DWQLYPGESCSGALLQGPGLAWC*KCRWFH Trigger: GTGGAACCACCGACATTTCCAACACCATGCCAAGCC...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | CAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCAGAAAGACCTTGCGGTCGATaGCGAGCCACCGGTCGGTGC | + |
Preference number: 4 (lower is better) Translates to: QLERSLKYQSQPWERHSERPCGR*RATGRC Trigger: GCACCGACCGGTGGCTCGTCATCGACCGCAAGGTCT...TTCTGAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CAA 72 bp | AACTGGTCTCTCTTGGCTCATGGAGTCCTAGAGGGCTaGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTA | + |
Preference number: 4 (lower is better) Translates to: NWSLLAHGVLEG*PCAGPAFSSSL Trigger: TAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCCGCAGGTTGTGCTTCTaGATCTCCTCCCAACGGAAG | + |
Preference number: 4 (lower is better) Translates to: LLQGPHSLDQASGTGQRIRRLCF*ISSQRK Trigger: CTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGCG...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTACAGGTGGCTGCCAGCTaGCTGCTGAACCAGTCCCGG | + |
Preference number: 4 (lower is better) Translates to: CPKTQPALCYSPIKKNSVQVAAS*LLNQSR Trigger: CCGGGACTGGTTCAGCAGCCAGCTGGCAGCCACCTG...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAATGATGATCTGGTACTaGAAGTACATAGGGATGAGC | + |
Preference number: 4 (lower is better) Translates to: DWQLYPGESCSGALLQGPMMIWY*KYIGMS Trigger: GCTCATCCCTATGTACTTCCAGTACCAGATCATCAT...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGATTTCAGCTTCTTCTTaGCATACTCAAGGGGCTGCC | + |
Preference number: 4 (lower is better) Translates to: RGWGLGCQEQNLIPGIFRISASS*HTQGAA Trigger: GGCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAAT...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCTGTTGGAAATGTCGGTaGTTCCACCAGTTGGCTGAG | + |
Preference number: 4 (lower is better) Translates to: SLRWSLAAGKKPQVPIPACWKCR*FHQLAE Trigger: CTCAGCCAACTGGTGGAACCACCGACATTTCCAACA...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGGGAAGATGTTGGGCTTaGCATGGTGTTGGAAATGTC | + |
Preference number: 4 (lower is better) Translates to: RGWGLGCQEQNLIPGIFRGRCWA*HGVGNV Trigger: GACATTTCCAACACCATGCCAAGCCCAACATCTTCC...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | GTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAACAGGTGGTTGGTTTTaGAGAGGTTCATGTCCTCAG | + |
Preference number: 4 (lower is better) Translates to: VVLGSWKEASSTNPSHGKTGGWF*RGSCPQ Trigger: CTGAGGACATGAACCTCTTCAAAACCAACCACCTGT...TTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGATCTTGTGCAGGTTGTaGCGTGGCATAGTGGGGAAG | + |
Preference number: 4 (lower is better) Translates to: NGVGRGEGRGITRKDASPILCRL*RGIVGK Trigger: CTTCCCCACTATGCCACGTCACAACCTGCACAAGAT...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCTCATTGAAGAAGGACTaGTCCACATTGCAGGTGGCT | + |
Preference number: 4 (lower is better) Translates to: LLQGPHSLDQASGTGQRISLKKD*STLQVA Trigger: AGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGA...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTACCAGGGCTCCCAAGATaGCGTAGAAAGGGATGTAGG | + |
Preference number: 4 (lower is better) Translates to: CPKTQPALCYSPIKKNSVPGLPR*RRKGCR Trigger: CCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGG...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CAAACAAGCAAACAAACATCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGCAGGCTGGGCTCCTCTaGGGCCAGCTCACCAATCAG | + |
Preference number: 4 (lower is better) Translates to: QTSKQTSVKTGMSQKEAKQAGLL*GQLTNQ Trigger: CTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTG...CTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGATGTTTGTTTGCTTGTTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | TTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCCCTTTAAGTGGCCAATaGCAAACTTGTGGACAACGT | + |
Preference number: 4 (lower is better) Translates to: LAAGKKPQVPIPAMGKTLPLSGQ*QTCGQR Trigger: ACGTTGTCCACAAGTTTGTCATTGGCCACTTAAAGG...GAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTC | + |
Preference number: 4 (lower is better) Translates to: NGVGRGEGRGITRKDASPWYSMP*LAQRDF Trigger: GAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCA...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | AGCTGCTCAGGGGCTCTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAAGAAAGAAGAACAGGTaGTTGGTTTTGAAGAGGTTC | + |
Preference number: 4 (lower is better) Translates to: SCSGALLQGPHSLDQASGRKKNR*LVLKRF Trigger: GAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCT...TCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGAGCCCCTGAGCAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGGTGGTTCCACCAGTTaGCTGAGGCACCCTTTAAGT | + |
Preference number: 4 (lower is better) Translates to: LHENGVGRGEGRGITRKDGGSTS*LRHPLS Trigger: ACTTAAAGGGTGCCTCAGCCAACTGGTGGAACCACC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGATCTCCATGACAAGGTaGTTCATCTGTGTGACCCAC | + |
Preference number: 4 (lower is better) Translates to: NGVGRGEGRGITRKDASPISMTR*FICVTH Trigger: GTGGGTCACACAGATGAACCACCTTGTCATGGAGAT...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCAGAAATTCAATGCCATGCTTaGCGCAGAGAGACTTCACCA | + |
Preference number: 4 (lower is better) Translates to: QLERSLKYQSQPWERHSEIQCHA*RRETSP Trigger: TGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAAT...TTCTGAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR TCA 90 bp | CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAAGATCAATCTCCATaGCAAGGTGGTTCATCTGTG | + |
Preference number: 4 (lower is better) Translates to: HLVKMDCPKTQPALCYSPQDQSP*QGGSSV Trigger: CACAGATGAACCACCTTGTCATGGAGATTGATCTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR GCA 90 bp | CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGTGGGGAAGAGGTGGTaGTCAATCTGGAAATTGAGG | + |
Preference number: 4 (lower is better) Translates to: LHENGVGRGEGRGITRKDVGKRW*SIWKLR Trigger: CCTCAATTTCCAGATTGAGCACCACCTCTTCCCCAC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTAATGTTGGGCTTGGCATaGTGTTGGAAATGTCGGTGG | + |
Preference number: 4 (lower is better) Translates to: CPKTQPALCYSPIKKNSVMLGLA*CWKCRW Trigger: CCACCGACATTTCCAACACCATGCCAAGCCCAACAT...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGAGAGACTTCACCAGTaGGGCAATCTTGTGCAGGTT | + |
Preference number: 4 (lower is better) Translates to: LHENGVGRGEGRGITRKDERLHQ*GNLVQV Trigger: AACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | ATAACAAGAAAGGATGCAAGCCCGGGGAATGTGAGGCAGCAGACACTTCAGTCTCCAATGACAAACTTGTaGACAACGTGGTTCCATATG | + |
Preference number: 4 (lower is better) Translates to: ITRKDASPGNVRQQTLQSPMTNL*TTWFHM Trigger: CATATGGAACCACGTTGTCCACAAGTTTGTCATTGG...AGACTGAAGTGTCTGCTGCCTCACATTCCCCGGGCTTGCATCCTTTCTTGTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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3UTR CAA 72 bp | TGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGTaGGTTAGTCCAGTTAGACCTCAGAATGACATAGCG | + |
Preference number: 4 (lower is better) Translates to: CRPSLFLQFTYW*VSPVRPQNDIA Trigger: CGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAACGTGGTTCCATATaGATTTCTTATAGACAGAAA | + |
Preference number: 4 (lower is better) Translates to: HLVKMDCPKTQPALCYSPQRGSI*ISYRQK Trigger: TTTCTGTCTATAAGAAATCCATATGGAACCACGTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CAAACAAGCAAACAAACATCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGAGCAACGGCTTCTCCTaGTATTCAATGCCATGCTTG | + |
Preference number: 4 (lower is better) Translates to: QTSKQTSVKTGMSQKEAKSNGFS*YSMPCL Trigger: CAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCT...CTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGATGTTTGTTTGCTTGTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CCA 90 bp | CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACATTGTCATGATGATCTaGTACTGGAAGTACATAGGG | + |
Preference number: 4 (lower is better) Translates to: LFLQFTYWLVSPVRPQNDIVMMI*YWKYIG Trigger: CCCTATGTACTTCCAGTACCAGATCATCATGACAAT...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | GGTCGGTGCGCAGGTTGTGCTTCTGAATCTCCTCCCAACGGAAGGTaGGCATCGGAGCCTGGCGCTCGGTGCTCCCCTCTCCCTGGTTAC | + |
Preference number: 5 (lower is better) Translates to: GRCAGCASESPPNGR*ASEPGARCSPLPGY Trigger: GTAACCAGGGAGAGGGGAGCACCGAGCGCCAGGCTCCGATGCCCACCTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGCGCACCGACC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGTTGCAGCCATCCAGCTaGGGCCTGAGAGGTAGCGAG | + |
Preference number: 5 (lower is better) Translates to: VPGWSVPPSTWLLPLLSPLQPSS*GLRGSE Trigger: CTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAA...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGGGGCTTGGCATGGTGTaGGAAATGTCGGTGGTTCCA | + |
Preference number: 5 (lower is better) Translates to: QPPLRLSGRRDWEAEGMGGLGMV*EMSVVP Trigger: TGGAACCACCGACATTTCCAACACCATGCCAAGCCC...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG 62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | CTCGGTGATCTGAGAGCTTTTGCCACGGTCCAGGCTGGGCTCCTCTaGGGCCAGCTCACCAATCAGCAGGGGCTTCAAGAACTTGCCCAC | + |
Preference number: 5 (lower is better) Translates to: LGDLRAFATVQAGLL*GQLTNQQGLQELAH Trigger: GTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGCTCTCAGATCACCGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGAGGAACCTGATAAAGTaGAGGAAAACCAGGGCTCCC | + |
Preference number: 5 (lower is better) Translates to: VPGWSVPPSTWLLPLLSPRNLIK*RKTRAP Trigger: GGGAGCCCTGGTTTTCCTCAACTTTATCAGGTTCCT...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS GCA 90 bp | TCGATCAGGGCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTGTGCAGG | + |
Preference number: 5 (lower is better) Translates to: SIRALSNGFSWYSMP*LAQRDFTSGAILCR Trigger: CCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | GCCAAGTCCACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTaGTACTGGAAGTACATAGGGATGAGCAGCGGCGGTCCGATCAGG | + |
Preference number: 5 (lower is better) Translates to: AKSTQSLRLIIVMMI*YWKYIGMSSGGPIR Trigger: CCTGATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTGGACTTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025567.9 ENSMUST00000235937.2 |
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CDS-3UTR CAA 90 bp | CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGAAGAAGAACAGGTGGTaGGTTTTGAAGAGGTTCATG | + |
Preference number: 5 (lower is better) Translates to: QPPLRLSGRRDWEAEGMGKKNRW*VLKRFM Trigger: CATGAACCTCTTCAAAACCAACCACCTGTTCTTCTT...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | TCCACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTGGTACTaGAAGTACATAGGGATGAGCAGCGGCGGTCCGATCAGGAAGAAG | + |
Preference number: 5 (lower is better) Translates to: STQSLRLIIVMMIWY*KYIGMSSGGPIRKK Trigger: CTTCTTCCTGATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025567.9 ENSMUST00000235937.2 |
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CDS-3UTR CAA 90 bp | AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGCCGCTGAACCAGTCATaGAAGAAGGACTGCTCCACA | + |
Preference number: 5 (lower is better) Translates to: RGWGLGCQEQNLIPGIFRPLNQS*KKDCST Trigger: TGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGG...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | GTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAATATTCAATGCCATGCTaGGCGCAGAGAGACTTCACC | + |
Preference number: 5 (lower is better) Translates to: VVLGSWKEASSTNPSHGKYSMPC*AQRDFT Trigger: GGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATA...TTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | TGGAAATGTCGGTGGTTCCACCAGTTGGCTGAGGCACCCTTTAAGTaGCCAATGACAAACTTGTGGACAACGTGGTTCCATATGGATTTC | + |
Preference number: 5 (lower is better) Translates to: WKCRWFHQLAEAPFK*PMTNLWTTWFHMDF Trigger: GAAATCCATATGGAACCACGTTGTCCACAAGTTTGTCATTGGCCACTTAAAGGGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGTATTTCAGCTTCTTCTaGCCATACTCAAGGGGCTGC | + |
Preference number: 5 (lower is better) Translates to: NGVGRGEGRGITRKDASPYFSFF*PYSRGC Trigger: GCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAATA...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 90 bp | CTTTCCATGACGATGATGTGGGACAGGAGGAGAAAGAAGAACAGGTaGTTGGTTTTGAAGAGGTTCATGTCCTCAGCAGTCTTCTTCAGG | + |
Preference number: 5 (lower is better) Translates to: LSMTMMWDRRRKKNR*LVLKRFMSSAVFFR Trigger: CCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS-3UTR CAA 90 bp | CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACTGGCCAATGACAAACTaGTGGACAACGTGGTTCCAT | + |
Preference number: 5 (lower is better) Translates to: LFLQFTYWLVSPVRPQNDWPMTN*WTTWFH Trigger: ATGGAACCACGTTGTCCACAAGTTTGTCATTGGCCA...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 72 bp | GCAGGTTGTGCTTCTGAATCTCCTCCCAACGGAAGGTaGGCATCGGAGCCTGGCGCTCGGTGCTCCCCTCTC | + |
Preference number: 6 (lower is better) Translates to: AGCASESPPNGR*ASEPGARCSPL Trigger: GAGAGGGGAGCACCGAGCGCCAGGCTCCGATGCCCACCTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS TCA 72 bp | GCAGTCTTCTTCAGGGCCCTGAAGTCCTCGGTGATCTaGGAGCTTTTGCCACGGTCCAGGCTGGGCTCCTCT | + |
Preference number: 6 (lower is better) Translates to: AVFFRALKSSVI*ELLPRSRLGSS Trigger: AGAGGAGCCCAGCCTGGACCGTGGCAAAAGCTCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS GCA 72 bp | GCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTCACCAGTGGGGCAATC | + |
Preference number: 6 (lower is better) Translates to: ALSNGFSWYSMP*LAQRDFTSGAI Trigger: GATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CAA 90 bp | ATCAGGGCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATGCTaGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTGTGCAGGTTG | + |
Preference number: 6 (lower is better) Translates to: IRALSNGFSWYSMPC*AQRDFTSGAILCRL Trigger: CAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS TCA 72 bp | AAGGGATGTAGGTGTAGAAGAAACGCATATAGTAGCTaGTGGCCCAAGCCAAGTCCACCCAGTCCCTGCGGC | + |
Preference number: 6 (lower is better) Translates to: KGCRCRRNAYSS*WPKPSPPSPCG Trigger: GCCGCAGGGACTGGGTGGACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 72 bp | TCCCTGCGGCTGATCATTGTCATGATGATCTGGTACTaGAAGTACATAGGGATGAGCAGCGGCGGTCCGATC | + |
Preference number: 6 (lower is better) Translates to: SLRLIIVMMIWY*KYIGMSSGGPI Trigger: GATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025567.9 ENSMUST00000235937.2 |
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CDS CCA 72 bp | ACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTaGTACTGGAAGTACATAGGGATGAGCAGCGGCGGT | + |
Preference number: 6 (lower is better) Translates to: TQSLRLIIVMMI*YWKYIGMSSGG Trigger: ACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025567.9 ENSMUST00000235937.2 |
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CDS CCA 72 bp | CTTCACCAGTGGGGCAATCTTGTGCAGGTTGTGACGTaGCATAGTGGGGAAGAGGTGGTGCTCAATCTGGAA | + |
Preference number: 6 (lower is better) Translates to: LHQWGNLVQVVT*HSGEEVVLNLE Trigger: TTCCAGATTGAGCACCACCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CCA 72 bp | TTCTTGCCATACTTAAATGCAGGTGGCACCATGACATaGCTTAGGGTCTCAAGGGGCTGCCACTCGCCAAGG | + |
Preference number: 6 (lower is better) Translates to: FLPYLNAGGTMT*LRVSRGCHSPR Trigger: CCTTGGCGAGTGGCAGCCCCTTGAGACCCTAAGCCATGTCATGGTGCCACCTGCATTTAAGTATGGCAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000235937.2 |
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CDS CAA 72 bp | CTCAGCAACGGCTTCTCCTGGTATTCAATGCCATGCTaGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTG | + |
Preference number: 6 (lower is better) Translates to: LSNGFSWYSMPC*AQRDFTSGAIL Trigger: CAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CAA 72 bp | GGATTTCTTATAGACAGAAAGGTGGCCATAGTCATGTaGCAGCCATCCAGCTTGGGCCTGAGAGGTAGCGAG | + |
Preference number: 6 (lower is better) Translates to: GFLIDRKVAIVM*QPSSLGLRGSE Trigger: CTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAACATGACTATGGCCACCTTTCTGTCTATAAGAAATCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS CAA 90 bp | GTTCCATATGGATTTCTTATAGACAGAAAGGTGGCCATAGTCATGTaGCAGCCATCCAGCTTGGGCCTGAGAGGTAGCGAGGACAAAGGC | + |
Preference number: 6 (lower is better) Translates to: VPYGFLIDRKVAIVM*QPSSLGLRGSEDKG Trigger: GCCTTTGTCCTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAACATGACTATGGCCACCTTTCTGTCTATAAGAAATCCATATGGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |
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CDS GCA 72 bp | AGGTATTTCAGCTTCTTCTTGCCATACTCAAGGGGCTaGCACTCGCCAAGGACAAACACATGCAGGCTCTTT | + |
Preference number: 6 (lower is better) Translates to: RYFSFFLPYSRG*HSPRTNTCRLF Trigger: AAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAATACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025567.9 |