RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FADS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024665

Ensembl transcript IDs: ENSMUST00000025567.9, ENSMUST00000235937.2

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTGAGCCTCACTaGGTACCCCCAACAGCCCTCCTGAGACCTCACACCCTACCCTGT +
Preference number: 1 (lower is better)
Translates to: CPQPPLPSTLLLEPH*VPPTALLRPHTLPC
Trigger: ACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 90 bp ATTTCCCTCATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTaGGCCTCACTGGGTACCCCCAACAGCCCTCCTGAGACCTCACAC +
Preference number: 1 (lower is better)
Translates to: ISLMPSASSSLYTPA*ASLGTPNSPPETSH
Trigger: GTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCATGAGGGAAAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 90 bp TTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTaGGCCCGCACAAGGAACACTCCCTTTGGTTTCTGGAGTTGGGTA +
Preference number: 1 (lower is better)
Translates to: FQAGQSLLQPGYCLS*ARTRNTPFGFWSWV
Trigger: TACCCAACTCCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 90 bp GAAGCCAAGTGCTGGCTAGATTGGCAGCTCTATCCTGGGGAGAGCTaGTCAGGGGCTCTCCTGCAAGGTCCACATTCTCTAGACCAAGCA +
Preference number: 1 (lower is better)
Translates to: EAKCWLDWQLYPGES*SGALLQGPHSLDQA
Trigger: TGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 90 bp CAGGAATCTTTAGGTGCAGAAGTTAAAGGCAGACGCGTAACCACCTaGGACAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGG +
Preference number: 1 (lower is better)
Translates to: QESLGAEVKGRRVTT*DNHLSGSLGEGTGR
Trigger: CCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTGTCTCAGGTGGTTACGCGTCTGCCTTTAACTTCTGCACCTAAAGATTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 90 bp CTACACTCCTGCTTGAGCCTCACTGGGTACCCCCAACAGCCCTCCTaGGACCTCACACCCTACCCTGTTTTTCCTGCCTTTCTGATAGCA +
Preference number: 1 (lower is better)
Translates to: LHSCLSLTGYPQQPS*DLTPYPVFPAFLIA
Trigger: TGCTATCAGAAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 90 bp CCCCCAACAGCCCTCCTGAGACCTCACACCCTACCCTGTTTTTCCTaGCTTTCTGATAGCAGCAACCTCAAGCCACAGCGTATACTGTGG +
Preference number: 1 (lower is better)
Translates to: PPTALLRPHTLPCFS*LSDSSNLKPQRILW
Trigger: CCACAGTATACGCTGTGGCTTGAGGTTGCTGCTATCAGAAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 90 bp TTCTCTGCCTCTGTGGAACAATACCAACTGGTCTCTCTTGGCTCATaGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGCCTTTTCCTC +
Preference number: 1 (lower is better)
Translates to: FSASVEQYQLVSLGS*SPRGLALCRPSLFL
Trigger: GAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGAGGCAGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 90 bp CTTTCTGATAGCAGCAACCTCAAGCCACAGCGTATACTGTGGCCTTaGAGGCGAAGCCTAGCTCTACCTGAAGGGCAAGGGACATCTAGT +
Preference number: 1 (lower is better)
Translates to: LSDSSNLKPQRILWP*RRSLALPEGQGTSS
Trigger: ACTAGATGTCCCTTGCCCTTCAGGTAGAGCTAGGCTTCGCCTTCAAGGCCACAGTATACGCTGTGGCTTGAGGTTGCTGCTATCAGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 90 bp GGGCTTGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTaGTTGGTTAGTCCAGTTAGACCTCAGAATGACATAGCGTGGGTC +
Preference number: 1 (lower is better)
Translates to: GLALCRPSLFLQFTY*LVSPVRPQNDIAWV
Trigger: GACCCACGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 90 bp AGAACTTTTCCTTGGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTaGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACT +
Preference number: 1 (lower is better)
Translates to: RTFPWSSKSKVVLGS*KEASSTNPSHGKDT
Trigger: AGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 90 bp TTCTGGAGTTGGGTAGATGATGAAATAGAACCTGTACAAACCCTATaGTCTGGAGTTGTGATGGTGGGCATGAGAGAACTTTTCCTTGGT +
Preference number: 1 (lower is better)
Translates to: FWSWVDDEIEPVQTL*SGVVMVGMRELFLG
Trigger: ACCAAGGAAAAGTTCTCTCATGCCCACCATCACAACTCCAGACCATAGGGTTTGTACAGGTTCTATTTCATCATCTACCCAACTCCAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCGCCCTCCCCTCCCTCTaGCTGTCACCCAACAGTGCC +
Preference number: 2 (lower is better)
Translates to: LLQGPHSLDQASGTGQRIALPSL*LSPNSA
Trigger: GGCACTGTTGGGTGACAGCCAGAGGGAGGGGAGGGC...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CAA 90 bp CCTATGGGTTCTCTGCCTCTGTGGAACAATACCAACTGGTCTCTCTaGGCTCATGGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGCC +
Preference number: 2 (lower is better)
Translates to: PMGSLPLWNNTNWSL*AHGVLEGLPCAGPA
Trigger: GGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGAGGCAGAGAACCCATAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCACCTCTCCGGCTCTCTaGGAGAAGGGACTGGGAGGC +
Preference number: 2 (lower is better)
Translates to: SLRWSLAAGKKPQVPIPATSPAL*EKGLGG
Trigger: GCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGT...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR GCA 90 bp CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCTGTCACCCAACAGTaGCCCTTTCCCGAGGGTGCC +
Preference number: 2 (lower is better)
Translates to: LHENGVGRGEGRGITRKDAVTQQ*PFPEGA
Trigger: GGCACCCTCGGGAAAGGGGCACTGTTGGGTGACAGC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp TTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCTGTAGAGCCAAGTCCTaGACTCCTGTTCCACAGGCC +
Preference number: 2 (lower is better)
Translates to: LAAGKKPQVPIPAMGKTLCRAKS*TPVPQA
Trigger: GGCCTGTGGAACAGGAGTCCAGGACTTGGCTCTACA...GAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CAA 90 bp CTTGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGTaGGTTAGTCCAGTTAGACCTCAGAATGACATAGCGTGGGTCCCC +
Preference number: 2 (lower is better)
Translates to: LALCRPSLFLQFTYW*VSPVRPQNDIAWVP
Trigger: GGGGACCCACGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CAA 90 bp AACAATACCAACTGGTCTCTCTTGGCTCATGGAGTCCTAGAGGGCTaGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGT +
Preference number: 2 (lower is better)
Translates to: NNTNWSLLAHGVLEG*PCAGPAFSSSLHIG
Trigger: ACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCTACCAATCCCAGCCATaGGAAAGACACTCAGAACGA +
Preference number: 2 (lower is better)
Translates to: LLQGPHSLDQASGTGQRIYQSQP*ERHSER
Trigger: TCGTTCTGAGTGTCTTTCCCATGGCTGGGATTGGTA...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGTTTGGTTTCTGGAGTTaGGTAGATGATGAAATAGAA +
Preference number: 2 (lower is better)
Translates to: VPGWSVPPSTWLLPLLSPFGFWS*VDDEIE
Trigger: TTCTATTTCATCATCTACCCAACTCCAGAAACCAAA...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR GCA 90 bp CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAAAAAGAAGCCAAGTaGTGGCTAGATTGGCAGCTC +
Preference number: 2 (lower is better)
Translates to: HLVKMDCPKTQPALCYSPQKEAK*WLDWQL
Trigger: GAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR TCA 90 bp TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTAATGTCTTCACCCAAATaGCTACACCATAATGCTGAC +
Preference number: 2 (lower is better)
Translates to: CPKTQPALCYSPIKKNSVMSSPK*LHHNAD
Trigger: GTCAGCATTATGGTGTAGTCATTTGGGTGAAGACAT...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CCA 90 bp CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACACTCCCTTTGGTTTCTaGAGTTGGGTAGATGATGAA +
Preference number: 2 (lower is better)
Translates to: LFLQFTYWLVSPVRPQNDTPFGF*SWVDDE
Trigger: TTCATCATCTACCCAACTCCAGAAACCAAAGGGAGT...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 72 bp CCTCATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTaGTTGAGCCTCACTGGGTACCCCCAACAGCCCTCC +
Preference number: 3 (lower is better)
Translates to: PHALSLLFPLHS*LSLTGYPQQPS
Trigger: GGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCATGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 72 bp ATGCCCTCAGCCTCCTCTTCCCTCTACACTCCTGCTTaGGCCTCACTGGGTACCCCCAACAGCCCTCCTGAG +
Preference number: 3 (lower is better)
Translates to: MPSASSSLYTPA*ASLGTPNSPPE
Trigger: CTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCAGGAGTGTAGAGGGAAGAGGAGGCTGAGGGCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp AGAAGCCAAGTGCTGGCTAGATTGGCAGCTCTATCCTaGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCC +
Preference number: 3 (lower is better)
Translates to: RSQVLARLAALS*GELLRGSPARS
Trigger: GGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR-3UTR CAA 90 bp GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGAGTCTAAGGTGGTCCTaGGCAGCTGGAAAGAAGCCT +
Preference number: 3 (lower is better)
Translates to: VPGWSVPPSTWLLPLLSPSLRWS*AAGKKP
Trigger: AGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 72 bp GGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTaGGCCCGCACAAGGAACACTCCCTTTGGTTTCTGG +
Preference number: 3 (lower is better)
Translates to: GQSLLQPGYCLS*ARTRNTPFGFW
Trigger: CCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 72 bp TGCTTGAGCCTCACTGGGTACCCCCAACAGCCCTCCTaGGACCTCACACCCTACCCTGTTTTTCCTGCCTTT +
Preference number: 3 (lower is better)
Translates to: CLSLTGYPQQPS*DLTPYPVFPAF
Trigger: AAAGGCAGGAAAAACAGGGTAGGGTGTGAGGTCTCAGGAGGGCTGTTGGGGGTACCCAGTGAGGCTCAAGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp TCTGTGGAACAATACCAACTGGTCTCTCTTGGCTCATaGAGTCCTAGAGGGCTTGCCCTGTGCAGGCCCAGC +
Preference number: 3 (lower is better)
Translates to: SVEQYQLVSLGS*SPRGLALCRPS
Trigger: GCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTTGGTATTGTTCCACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp CACCTGACTGTAGTGGGAGAGGTTAAAGTTCCAGGCTaGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTC +
Preference number: 3 (lower is better)
Translates to: HLTVVGEVKVPG*SVPPSTWLLPL
Trigger: GAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAACTTTAACCTCTCCCACTACAGTCAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp CCTTGGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTaGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGG +
Preference number: 3 (lower is better)
Translates to: PWSSKSKVVLGS*KEASSTNPSHG
Trigger: CCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp GTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGTGCTaGCTAGATTGGCAGCTCTATCCTGGGGAGAGCTGC +
Preference number: 3 (lower is better)
Translates to: VKTGMSQKEAKC*LDWQLYPGESC
Trigger: GCAGCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTGGCTCATCCCTGTCTTTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 72 bp TCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGTaGTGGCTAGATTGGCAGCTCTATCCTGGGGAGAGC +
Preference number: 3 (lower is better)
Translates to: SVKTGMSQKEAK*WLDWQLYPGES
Trigger: GCTCTCCCCAGGATAGAGCTGCCAATCTAGCCAGCACTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp TGGAGTTGTGATGGTGGGCATGAGAGAACTTTTCCTTaGTCCTCAAAGTCTAAGGTGGTCCTTGGCAGCTGG +
Preference number: 3 (lower is better)
Translates to: WSCDGGHERTFP*SSKSKVVLGSW
Trigger: CCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCTCTCATGCCCACCATCACAACTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp TCTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTaGAACTGGCCAGAGGATCTGGAAAAAGATCTGATC +
Preference number: 3 (lower is better)
Translates to: SPARSTFSRPSI*NWPEDLEKDLI
Trigger: GATCAGATCTTTTTCCAGATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR TCA 72 bp GAAAGACACTCAGAACGAAGCATGTCTTCACCCAAATaGCTACACCATAATGCTGACAGGGAGTGTAGAGCC +
Preference number: 3 (lower is better)
Translates to: ERHSERSMSSPK*LHHNADRECRA
Trigger: GGCTCTACACTCCCTGTCAGCATTATGGTGTAGTCATTTGGGTGAAGACATGCTTCGTTCTGAGTGTCTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 72 bp AAAAGTAGAGGCGGGGAACAAGATGATACAAATGACTaGCATCTCCTATGGGTTCTCTGCCTCTGTGGAACA +
Preference number: 3 (lower is better)
Translates to: KSRGGEQDDTND*HLLWVLCLCGT
Trigger: TGTTCCACAGAGGCAGAGAACCCATAGGAGATGGCAGTCATTTGTATCATCTTGTTCCCCGCCTCTACTTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp ATGAGAGAACTTTTCCTTGGTCCTCAAAGTCTAAGGTaGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCA +
Preference number: 3 (lower is better)
Translates to: MRELFLGPQSLR*SLAAGKKPQVP
Trigger: TGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACTTTGAGGACCAAGGAAAAGTTCTCTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp GCCCGCACAAGGAACACTCCCTTTGGTTTCTGGAGTTaGGTAGATGATGAAATAGAACCTGTACAAACCCTA +
Preference number: 3 (lower is better)
Translates to: ARTRNTPFGFWS*VDDEIEPVQTL
Trigger: TAGGGTTTGTACAGGTTCTATTTCATCATCTACCCAACTCCAGAAACCAAAGGGAGTGTTCCTTGTGCGGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp GGGGAACAAGATGATACAAATGACTGCCATCTCCTATaGGTTCTCTGCCTCTGTGGAACAATACCAACTGGT +
Preference number: 3 (lower is better)
Translates to: GEQDDTNDCHLL*VLCLCGTIPTG
Trigger: ACCAGTTGGTATTGTTCCACAGAGGCAGAGAACCCATAGGAGATGGCAGTCATTTGTATCATCTTGTTCCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp CTGTGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTaGTTGGTTAGTCCAGTTAGACCTCAGAATGACATA +
Preference number: 3 (lower is better)
Translates to: LCRPSLFLQFTY*LVSPVRPQNDI
Trigger: TATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CCA 72 bp TGGGTAGATGATGAAATAGAACCTGTACAAACCCTATaGTCTGGAGTTGTGATGGTGGGCATGAGAGAACTT +
Preference number: 3 (lower is better)
Translates to: WVDDEIEPVQTL*SGVVMVGMREL
Trigger: AAGTTCTCTCATGCCCACCATCACAACTCCAGACCATAGGGTTTGTACAGGTTCTATTTCATCATCTACCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR GCA 72 bp GTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTaGTACTCTCCTATTAAGAAGAATTCTGTAGGAAAT +
Preference number: 3 (lower is better)
Translates to: VKMDCPKTQPAL*YSPIKKNSVGN
Trigger: ATTTCCTACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGGGGGCTTCAAGAACTTaGCCACGAAGTCCAGGTCCA +
Preference number: 4 (lower is better)
Translates to: QPPLRLSGRRDWEAEGMGGASRT*PRSPGP
Trigger: TGGACCTGGACTTCGTGGGCAAGTTCTTGAAGCCCC...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG
62% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCTGCCACGGTCCAGGCTaGGCTCCTCTGGGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: SLRWSLAAGKKPQVPIPACHGPG*APLGPA
Trigger: AGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCA...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGGTGCAGGTTGTGACGTaGCATAGTGGGGAAGAGGTG +
Preference number: 4 (lower is better)
Translates to: VPGWSVPPSTWLLPLLSPVQVVT*HSGEEV
Trigger: CACCTCTTCCCCACTATGCCACGTCACAACCTGCAC...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAAAGTCCAGGTCCAGATaGAAGGCACGGAAGGCATCC +
Preference number: 4 (lower is better)
Translates to: DWQLYPGESCSGALLQGPKSRSR*KARKAS
Trigger: GGATGCCTTCCGTGCCTTCCATCTGGACCTGGACTT...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAGGCTTGGCATGGTGTTaGAAATGTCGGTGGTTCCAC +
Preference number: 4 (lower is better)
Translates to: DWQLYPGESCSGALLQGPGLAWC*KCRWFH
Trigger: GTGGAACCACCGACATTTCCAACACCATGCCAAGCC...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp CAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCAGAAAGACCTTGCGGTCGATaGCGAGCCACCGGTCGGTGC +
Preference number: 4 (lower is better)
Translates to: QLERSLKYQSQPWERHSERPCGR*RATGRC
Trigger: GCACCGACCGGTGGCTCGTCATCGACCGCAAGGTCT...TTCTGAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CAA 72 bp AACTGGTCTCTCTTGGCTCATGGAGTCCTAGAGGGCTaGCCCTGTGCAGGCCCAGCCTTTTCCTCCAGTTTA +
Preference number: 4 (lower is better)
Translates to: NWSLLAHGVLEG*PCAGPAFSSSL
Trigger: TAAACTGGAGGAAAAGGCTGGGCCTGCACAGGGCAAGCCCTCTAGGACTCCATGAGCCAAGAGAGACCAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCCGCAGGTTGTGCTTCTaGATCTCCTCCCAACGGAAG +
Preference number: 4 (lower is better)
Translates to: LLQGPHSLDQASGTGQRIRRLCF*ISSQRK
Trigger: CTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGCG...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTACAGGTGGCTGCCAGCTaGCTGCTGAACCAGTCCCGG +
Preference number: 4 (lower is better)
Translates to: CPKTQPALCYSPIKKNSVQVAAS*LLNQSR
Trigger: CCGGGACTGGTTCAGCAGCCAGCTGGCAGCCACCTG...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp GATTGGCAGCTCTATCCTGGGGAGAGCTGCTCAGGGGCTCTCCTGCAAGGTCCAATGATGATCTGGTACTaGAAGTACATAGGGATGAGC +
Preference number: 4 (lower is better)
Translates to: DWQLYPGESCSGALLQGPMMIWY*KYIGMS
Trigger: GCTCATCCCTATGTACTTCCAGTACCAGATCATCAT...TGGACCTTGCAGGAGAGCCCCTGAGCAGCTCTCCCCAGGATAGAGCTGCCAATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGATTTCAGCTTCTTCTTaGCATACTCAAGGGGCTGCC +
Preference number: 4 (lower is better)
Translates to: RGWGLGCQEQNLIPGIFRISASS*HTQGAA
Trigger: GGCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAAT...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp AGTCTAAGGTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCTGTTGGAAATGTCGGTaGTTCCACCAGTTGGCTGAG +
Preference number: 4 (lower is better)
Translates to: SLRWSLAAGKKPQVPIPACWKCR*FHQLAE
Trigger: CTCAGCCAACTGGTGGAACCACCGACATTTCCAACA...GGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCACCTTAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGGGAAGATGTTGGGCTTaGCATGGTGTTGGAAATGTC +
Preference number: 4 (lower is better)
Translates to: RGWGLGCQEQNLIPGIFRGRCWA*HGVGNV
Trigger: GACATTTCCAACACCATGCCAAGCCCAACATCTTCC...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp GTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAACAGGTGGTTGGTTTTaGAGAGGTTCATGTCCTCAG +
Preference number: 4 (lower is better)
Translates to: VVLGSWKEASSTNPSHGKTGGWF*RGSCPQ
Trigger: CTGAGGACATGAACCTCTTCAAAACCAACCACCTGT...TTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGATCTTGTGCAGGTTGTaGCGTGGCATAGTGGGGAAG +
Preference number: 4 (lower is better)
Translates to: NGVGRGEGRGITRKDASPILCRL*RGIVGK
Trigger: CTTCCCCACTATGCCACGTCACAACCTGCACAAGAT...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp CTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAACTGGCCAGAGGATCTCATTGAAGAAGGACTaGTCCACATTGCAGGTGGCT +
Preference number: 4 (lower is better)
Translates to: LLQGPHSLDQASGTGQRISLKKD*STLQVA
Trigger: AGCCACCTGCAATGTGGAGCAGTCCTTCTTCAATGA...GATCCTCTGGCCAGTTCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTACCAGGGCTCCCAAGATaGCGTAGAAAGGGATGTAGG +
Preference number: 4 (lower is better)
Translates to: CPKTQPALCYSPIKKNSVPGLPR*RRKGCR
Trigger: CCTACATCCCTTTCTACGGCATCTTGGGAGCCCTGG...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CAAACAAGCAAACAAACATCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGCAGGCTGGGCTCCTCTaGGGCCAGCTCACCAATCAG +
Preference number: 4 (lower is better)
Translates to: QTSKQTSVKTGMSQKEAKQAGLL*GQLTNQ
Trigger: CTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTG...CTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGATGTTTGTTTGCTTGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp TTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCCCTTTAAGTGGCCAATaGCAAACTTGTGGACAACGT +
Preference number: 4 (lower is better)
Translates to: LAAGKKPQVPIPAMGKTLPLSGQ*QTCGQR
Trigger: ACGTTGTCCACAAGTTTGTCATTGGCCACTTAAAGG...GAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTC +
Preference number: 4 (lower is better)
Translates to: NGVGRGEGRGITRKDASPWYSMP*LAQRDF
Trigger: GAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCA...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp AGCTGCTCAGGGGCTCTCCTGCAAGGTCCACATTCTCTAGACCAAGCATCTGGAAGAAAGAAGAACAGGTaGTTGGTTTTGAAGAGGTTC +
Preference number: 4 (lower is better)
Translates to: SCSGALLQGPHSLDQASGRKKNR*LVLKRF
Trigger: GAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCT...TCCAGATGCTTGGTCTAGAGAATGTGGACCTTGCAGGAGAGCCCCTGAGCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGGTGGTTCCACCAGTTaGCTGAGGCACCCTTTAAGT +
Preference number: 4 (lower is better)
Translates to: LHENGVGRGEGRGITRKDGGSTS*LRHPLS
Trigger: ACTTAAAGGGTGCCTCAGCCAACTGGTGGAACCACC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGATCTCCATGACAAGGTaGTTCATCTGTGTGACCCAC +
Preference number: 4 (lower is better)
Translates to: NGVGRGEGRGITRKDASPISMTR*FICVTH
Trigger: GTGGGTCACACAGATGAACCACCTTGTCATGGAGAT...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAAGACACTCAGAAATTCAATGCCATGCTTaGCGCAGAGAGACTTCACCA +
Preference number: 4 (lower is better)
Translates to: QLERSLKYQSQPWERHSEIQCHA*RRETSP
Trigger: TGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAAT...TTCTGAGTGTCTTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR TCA 90 bp CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAAGATCAATCTCCATaGCAAGGTGGTTCATCTGTG +
Preference number: 4 (lower is better)
Translates to: HLVKMDCPKTQPALCYSPQDQSP*QGGSSV
Trigger: CACAGATGAACCACCTTGTCATGGAGATTGATCTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR GCA 90 bp CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGTGGGGAAGAGGTGGTaGTCAATCTGGAAATTGAGG +
Preference number: 4 (lower is better)
Translates to: LHENGVGRGEGRGITRKDVGKRW*SIWKLR
Trigger: CCTCAATTTCCAGATTGAGCACCACCTCTTCCCCAC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp TGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTATTAAGAAGAATTCTGTAATGTTGGGCTTGGCATaGTGTTGGAAATGTCGGTGG +
Preference number: 4 (lower is better)
Translates to: CPKTQPALCYSPIKKNSVMLGLA*CWKCRW
Trigger: CCACCGACATTTCCAACACCATGCCAAGCCCAACAT...TACAGAATTCTTCTTAATAGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CTCCATGAGAATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGAGAGACTTCACCAGTaGGGCAATCTTGTGCAGGTT +
Preference number: 4 (lower is better)
Translates to: LHENGVGRGEGRGITRKDERLHQ*GNLVQV
Trigger: AACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTC...ATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATTCTCATGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp ATAACAAGAAAGGATGCAAGCCCGGGGAATGTGAGGCAGCAGACACTTCAGTCTCCAATGACAAACTTGTaGACAACGTGGTTCCATATG +
Preference number: 4 (lower is better)
Translates to: ITRKDASPGNVRQQTLQSPMTNL*TTWFHM
Trigger: CATATGGAACCACGTTGTCCACAAGTTTGTCATTGG...AGACTGAAGTGTCTGCTGCCTCACATTCCCCGGGCTTGCATCCTTTCTTGTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
3UTR CAA 72 bp TGCAGGCCCAGCCTTTTCCTCCAGTTTACATATTGGTaGGTTAGTCCAGTTAGACCTCAGAATGACATAGCG +
Preference number: 4 (lower is better)
Translates to: CRPSLFLQFTYW*VSPVRPQNDIA
Trigger: CGCTATGTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAGGCTGGGCCTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CATCTAGTAAAGATGGATTGTCCTAAGACCCAGCCAGCCCTCTGCTACTCTCCTCAACGTGGTTCCATATaGATTTCTTATAGACAGAAA +
Preference number: 4 (lower is better)
Translates to: HLVKMDCPKTQPALCYSPQRGSI*ISYRQK
Trigger: TTTCTGTCTATAAGAAATCCATATGGAACCACGTTG...AGGAGAGTAGCAGAGGGCTGGCTGGGTCTTAGGACAATCCATCTTTACTAGATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CAAACAAGCAAACAAACATCTGTAAAGACAGGGATGAGCCAAAAAGAAGCCAAGAGCAACGGCTTCTCCTaGTATTCAATGCCATGCTTG +
Preference number: 4 (lower is better)
Translates to: QTSKQTSVKTGMSQKEAKSNGFS*YSMPCL
Trigger: CAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCT...CTTGGCTTCTTTTTGGCTCATCCCTGTCTTTACAGATGTTTGTTTGCTTGTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CCA 90 bp CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACATTGTCATGATGATCTaGTACTGGAAGTACATAGGG +
Preference number: 4 (lower is better)
Translates to: LFLQFTYWLVSPVRPQNDIVMMI*YWKYIG
Trigger: CCCTATGTACTTCCAGTACCAGATCATCATGACAAT...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp GGTCGGTGCGCAGGTTGTGCTTCTGAATCTCCTCCCAACGGAAGGTaGGCATCGGAGCCTGGCGCTCGGTGCTCCCCTCTCCCTGGTTAC +
Preference number: 5 (lower is better)
Translates to: GRCAGCASESPPNGR*ASEPGARCSPLPGY
Trigger: GTAACCAGGGAGAGGGGAGCACCGAGCGCCAGGCTCCGATGCCCACCTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGCGCACCGACC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGTTGCAGCCATCCAGCTaGGGCCTGAGAGGTAGCGAG +
Preference number: 5 (lower is better)
Translates to: VPGWSVPPSTWLLPLLSPLQPSS*GLRGSE
Trigger: CTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAA...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGGGGCTTGGCATGGTGTaGGAAATGTCGGTGGTTCCA +
Preference number: 5 (lower is better)
Translates to: QPPLRLSGRRDWEAEGMGGLGMV*EMSVVP
Trigger: TGGAACCACCGACATTTCCAACACCATGCCAAGCCC...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp CTCGGTGATCTGAGAGCTTTTGCCACGGTCCAGGCTGGGCTCCTCTaGGGCCAGCTCACCAATCAGCAGGGGCTTCAAGAACTTGCCCAC +
Preference number: 5 (lower is better)
Translates to: LGDLRAFATVQAGLL*GQLTNQQGLQELAH
Trigger: GTGGGCAAGTTCTTGAAGCCCCTGCTGATTGGTGAGCTGGCCCCAGAGGAGCCCAGCCTGGACCGTGGCAAAAGCTCTCAGATCACCGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp GTTCCAGGCTGGTCAGTCCCTCCTTCAACCTGGCTACTGCCTCTCCTGAGCCCGAGGAACCTGATAAAGTaGAGGAAAACCAGGGCTCCC +
Preference number: 5 (lower is better)
Translates to: VPGWSVPPSTWLLPLLSPRNLIK*RKTRAP
Trigger: GGGAGCCCTGGTTTTCCTCAACTTTATCAGGTTCCT...CGGGCTCAGGAGAGGCAGTAGCCAGGTTGAAGGAGGGACTGACCAGCCTGGAAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS GCA 90 bp TCGATCAGGGCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTGTGCAGG +
Preference number: 5 (lower is better)
Translates to: SIRALSNGFSWYSMP*LAQRDFTSGAILCR
Trigger: CCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGATCGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp GCCAAGTCCACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTaGTACTGGAAGTACATAGGGATGAGCAGCGGCGGTCCGATCAGG +
Preference number: 5 (lower is better)
Translates to: AKSTQSLRLIIVMMI*YWKYIGMSSGGPIR
Trigger: CCTGATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTGGACTTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025567.9
ENSMUST00000235937.2
CDS-3UTR CAA 90 bp CAACCACCTCTCCGGCTCTCTGGGAGAAGGGACTGGGAGGCAGAGGGGATGGGGAAGAAGAACAGGTGGTaGGTTTTGAAGAGGTTCATG +
Preference number: 5 (lower is better)
Translates to: QPPLRLSGRRDWEAEGMGKKNRW*VLKRFM
Trigger: CATGAACCTCTTCAAAACCAACCACCTGTTCTTCTT...CCCCATCCCCTCTGCCTCCCAGTCCCTTCTCCCAGAGAGCCGGAGAGGTGGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp TCCACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTGGTACTaGAAGTACATAGGGATGAGCAGCGGCGGTCCGATCAGGAAGAAG +
Preference number: 5 (lower is better)
Translates to: STQSLRLIIVMMIWY*KYIGMSSGGPIRKK
Trigger: CTTCTTCCTGATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025567.9
ENSMUST00000235937.2
CDS-3UTR CAA 90 bp AGGGGGTGGGGACTAGGCTGCCAGGAGCAGAATCTCATACCAGGAATCTTTAGGCCGCTGAACCAGTCATaGAAGAAGGACTGCTCCACA +
Preference number: 5 (lower is better)
Translates to: RGWGLGCQEQNLIPGIFRPLNQS*KKDCST
Trigger: TGTGGAGCAGTCCTTCTTCAATGACTGGTTCAGCGG...CCTAAAGATTCCTGGTATGAGATTCTGCTCCTGGCAGCCTAGTCCCCACCCCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp GTGGTCCTTGGCAGCTGGAAAGAAGCCTCAAGTACCAATCCCAGCCATGGGAAATATTCAATGCCATGCTaGGCGCAGAGAGACTTCACC +
Preference number: 5 (lower is better)
Translates to: VVLGSWKEASSTNPSHGKYSMPC*AQRDFT
Trigger: GGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATA...TTTCCCATGGCTGGGATTGGTACTTGAGGCTTCTTTCCAGCTGCCAAGGACCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp TGGAAATGTCGGTGGTTCCACCAGTTGGCTGAGGCACCCTTTAAGTaGCCAATGACAAACTTGTGGACAACGTGGTTCCATATGGATTTC +
Preference number: 5 (lower is better)
Translates to: WKCRWFHQLAEAPFK*PMTNLWTTWFHMDF
Trigger: GAAATCCATATGGAACCACGTTGTCCACAAGTTTGTCATTGGCCACTTAAAGGGTGCCTCAGCCAACTGGTGGAACCACCGACATTTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp AATGGAGTAGGTAGGGGTGAGGGAAGAGGAATAACAAGAAAGGATGCAAGCCCGTATTTCAGCTTCTTCTaGCCATACTCAAGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: NGVGRGEGRGITRKDASPYFSFF*PYSRGC
Trigger: GCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAATA...CGGGCTTGCATCCTTTCTTGTTATTCCTCTTCCCTCACCCCTACCTACTCCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 90 bp CTTTCCATGACGATGATGTGGGACAGGAGGAGAAAGAAGAACAGGTaGTTGGTTTTGAAGAGGTTCATGTCCTCAGCAGTCTTCTTCAGG +
Preference number: 5 (lower is better)
Translates to: LSMTMMWDRRRKKNR*LVLKRFMSSAVFFR
Trigger: CCTGAAGAAGACTGCTGAGGACATGAACCTCTTCAAAACCAACCACCTGTTCTTCTTTCTCCTCCTGTCCCACATCATCGTCATGGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS-3UTR CAA 90 bp CTTTTCCTCCAGTTTACATATTGGTTGGTTAGTCCAGTTAGACCTCAGAATGACTGGCCAATGACAAACTaGTGGACAACGTGGTTCCAT +
Preference number: 5 (lower is better)
Translates to: LFLQFTYWLVSPVRPQNDWPMTN*WTTWFH
Trigger: ATGGAACCACGTTGTCCACAAGTTTGTCATTGGCCA...GTCATTCTGAGGTCTAACTGGACTAACCAACCAATATGTAAACTGGAGGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 72 bp GCAGGTTGTGCTTCTGAATCTCCTCCCAACGGAAGGTaGGCATCGGAGCCTGGCGCTCGGTGCTCCCCTCTC +
Preference number: 6 (lower is better)
Translates to: AGCASESPPNGR*ASEPGARCSPL
Trigger: GAGAGGGGAGCACCGAGCGCCAGGCTCCGATGCCCACCTTCCGTTGGGAGGAGATTCAGAAGCACAACCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS TCA 72 bp GCAGTCTTCTTCAGGGCCCTGAAGTCCTCGGTGATCTaGGAGCTTTTGCCACGGTCCAGGCTGGGCTCCTCT +
Preference number: 6 (lower is better)
Translates to: AVFFRALKSSVI*ELLPRSRLGSS
Trigger: AGAGGAGCCCAGCCTGGACCGTGGCAAAAGCTCTCAGATCACCGAGGACTTCAGGGCCCTGAAGAAGACTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS GCA 72 bp GCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATaGTTGGCGCAGAGAGACTTCACCAGTGGGGCAATC +
Preference number: 6 (lower is better)
Translates to: ALSNGFSWYSMP*LAQRDFTSGAI
Trigger: GATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CAA 90 bp ATCAGGGCCCTCAGCAACGGCTTCTCCTGGTATTCAATGCCATGCTaGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTGTGCAGGTTG +
Preference number: 6 (lower is better)
Translates to: IRALSNGFSWYSMPC*AQRDFTSGAILCRL
Trigger: CAACCTGCACAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAGGGCCCTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS TCA 72 bp AAGGGATGTAGGTGTAGAAGAAACGCATATAGTAGCTaGTGGCCCAAGCCAAGTCCACCCAGTCCCTGCGGC +
Preference number: 6 (lower is better)
Translates to: KGCRCRRNAYSS*WPKPSPPSPCG
Trigger: GCCGCAGGGACTGGGTGGACTTGGCTTGGGCCATCAGCTACTATATGCGTTTCTTCTACACCTACATCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 72 bp TCCCTGCGGCTGATCATTGTCATGATGATCTGGTACTaGAAGTACATAGGGATGAGCAGCGGCGGTCCGATC +
Preference number: 6 (lower is better)
Translates to: SLRLIIVMMIWY*KYIGMSSGGPI
Trigger: GATCGGACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025567.9
ENSMUST00000235937.2
CDS CCA 72 bp ACCCAGTCCCTGCGGCTGATCATTGTCATGATGATCTaGTACTGGAAGTACATAGGGATGAGCAGCGGCGGT +
Preference number: 6 (lower is better)
Translates to: TQSLRLIIVMMI*YWKYIGMSSGG
Trigger: ACCGCCGCTGCTCATCCCTATGTACTTCCAGTACCAGATCATCATGACAATGATCAGCCGCAGGGACTGGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025567.9
ENSMUST00000235937.2
CDS CCA 72 bp CTTCACCAGTGGGGCAATCTTGTGCAGGTTGTGACGTaGCATAGTGGGGAAGAGGTGGTGCTCAATCTGGAA +
Preference number: 6 (lower is better)
Translates to: LHQWGNLVQVVT*HSGEEVVLNLE
Trigger: TTCCAGATTGAGCACCACCTCTTCCCCACTATGCCACGTCACAACCTGCACAAGATTGCCCCACTGGTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CCA 72 bp TTCTTGCCATACTTAAATGCAGGTGGCACCATGACATaGCTTAGGGTCTCAAGGGGCTGCCACTCGCCAAGG +
Preference number: 6 (lower is better)
Translates to: FLPYLNAGGTMT*LRVSRGCHSPR
Trigger: CCTTGGCGAGTGGCAGCCCCTTGAGACCCTAAGCCATGTCATGGTGCCACCTGCATTTAAGTATGGCAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235937.2
CDS CAA 72 bp CTCAGCAACGGCTTCTCCTGGTATTCAATGCCATGCTaGGCGCAGAGAGACTTCACCAGTGGGGCAATCTTG +
Preference number: 6 (lower is better)
Translates to: LSNGFSWYSMPC*AQRDFTSGAIL
Trigger: CAAGATTGCCCCACTGGTGAAGTCTCTCTGCGCCAAGCATGGCATTGAATACCAGGAGAAGCCGTTGCTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CAA 72 bp GGATTTCTTATAGACAGAAAGGTGGCCATAGTCATGTaGCAGCCATCCAGCTTGGGCCTGAGAGGTAGCGAG +
Preference number: 6 (lower is better)
Translates to: GFLIDRKVAIVM*QPSSLGLRGSE
Trigger: CTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAACATGACTATGGCCACCTTTCTGTCTATAAGAAATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS CAA 90 bp GTTCCATATGGATTTCTTATAGACAGAAAGGTGGCCATAGTCATGTaGCAGCCATCCAGCTTGGGCCTGAGAGGTAGCGAGGACAAAGGC +
Preference number: 6 (lower is better)
Translates to: VPYGFLIDRKVAIVM*QPSSLGLRGSEDKG
Trigger: GCCTTTGTCCTCGCTACCTCTCAGGCCCAAGCTGGATGGCTGCAACATGACTATGGCCACCTTTCTGTCTATAAGAAATCCATATGGAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9
CDS GCA 72 bp AGGTATTTCAGCTTCTTCTTGCCATACTCAAGGGGCTaGCACTCGCCAAGGACAAACACATGCAGGCTCTTT +
Preference number: 6 (lower is better)
Translates to: RYFSFFLPYSRG*HSPRTNTCRLF
Trigger: AAAGAGCCTGCATGTGTTTGTCCTTGGCGAGTGGCAGCCCCTTGAGTATGGCAAGAAGAAGCTGAAATACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025567.9