Pregenerated sensors for FABP6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020405Ensembl transcript IDs: ENSMUST00000020672.5
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGTAACTCTGCCACCACCTTaGCACCCTCCATCTTCACGG | + |
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Preference number: 4 (lower is better) Translates to: IHETLLLVGRSPSKPSLVTLPPP*HPPSSR Trigger: CCGTGAAGATGGAGGGTGGCAAGGTGGTGGCAGAGT...TACCAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR GCA 90 bp | GTGATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGATAGTTGGGGAACTCTaGCACCACCTTGCCACCCTC | + |
|
Preference number: 4 (lower is better) Translates to: VIHETLLLVGRSPSKPSLIVGEL*HHLATL Trigger: GAGGGTGGCAAGGTGGTGGCAGAGTTCCCCAACTAT...CAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGATCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR GCA 90 bp | ATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGTAAAGTCCTGTCCGTCCTaGTGGACCTCTGTGATGATC | + |
|
Preference number: 4 (lower is better) Translates to: IHETLLLVGRSPSKPSLVKSCPS*WTSVMI Trigger: GATCATCACAGAGGTCCAGCAGGACGGACAGGACTT...TACCAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR CCA 90 bp | GTGATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGAAGTCTGGTGATAGTTaGGGAACTCTGCCACCACCT | + |
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Preference number: 4 (lower is better) Translates to: VIHETLLLVGRSPSKPSLKSGDS*GTLPPP Trigger: AGGTGGTGGCAGAGTTCCCCAACTATCACCAGACTT...CAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGATCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS GCA 90 bp | CTTGTCACCCACGACCTCCGAAGTCTGGTGATAGTTGGGGAACTCTaGCACCACCTTGCCACCCTCCATCTTCACGGTAGCCTTGAACTT | + |
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Preference number: 5 (lower is better) Translates to: LVTHDLRSLVIVGEL*HHLATLHLHGSLEL Trigger: AAGTTCAAGGCTACCGTGAAGATGGAGGGTGGCAAGGTGGTGGCAGAGTTCCCCAACTATCACCAGACTTCGGAGGTCGTGGGTGACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGTAAACTCTGCCACCACCTaGCCACCCTCCATCTTCACG | + |
|
Preference number: 5 (lower is better) Translates to: IHETLLLVGRSPSKPSLVNSATT*PPSIFT Trigger: CGTGAAGATGGAGGGTGGCAAGGTGGTGGCAGAGTT...TACCAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR CAA 90 bp | GTGATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGAGATCTCCACCAACTaGTCACCCACGACCTCCGAA | + |
|
Preference number: 5 (lower is better) Translates to: VIHETLLLVGRSPSKPSLEISTN*SPTTSE Trigger: TTCGGAGGTCGTGGGTGACAAGTTGGTGGAGATCTC...CAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGATCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGTACCAATGGTGAACTTGTaGCTCATAATGTTGCCCCCA | + |
|
Preference number: 5 (lower is better) Translates to: IHETLLLVGRSPSKPSLVPMVNL*LIMLPP Trigger: TGGGGGCAACATTATGAGCAACAAGTTCACCATTGG...TACCAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS-3UTR CAA 90 bp | ATCCATGAAACACTTTTATTGGTGGGTCGTAGCCCCTCCAAGCCCAGCCTGGTATGCATTTCACATTCTTaGCCAATGGTGAACTTGTTG | + |
|
Preference number: 5 (lower is better) Translates to: IHETLLLVGRSPSKPSLVCISHS*PMVNLL Trigger: CAACAAGTTCACCATTGGCAAAGAATGTGAAATGCA...TACCAGGCTGGGCTTGGAGGGGCTACGACCCACCAATAAAAGTGTTTCATGGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS TCA 90 bp | TACGTCCCCTTTCAATCACGTCTCCTGGAAGACCCAGGCGCTTCATaGACTCATCGTAATTCTTCTCACTCTCAAATTCATATTTGCCAC | + |
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Preference number: 5 (lower is better) Translates to: YVPFQSRLLEDPGAS*THRNSSHSQIHICH Trigger: GTGGCAAATATGAATTTGAGAGTGAGAAGAATTACGATGAGTTCATGAAGCGCCTGGGTCTTCCAGGAGACGTGATTGAAAGGGGACGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS CCA 72 bp | ACTTGTCACCCACGACCTCCGAAGTCTGGTGATAGTTaGGGAACTCTGCCACCACCTTGCCACCCTCCATCT | + |
|
Preference number: 6 (lower is better) Translates to: TCHPRPPKSGDS*GTLPPPCHPPS Trigger: AGATGGAGGGTGGCAAGGTGGTGGCAGAGTTCCCCAACTATCACCAGACTTCGGAGGTCGTGGGTGACAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS CCA 72 bp | GCCTCTTGCTTACGCGCTCATAGGTCACATCCCCGATaGTGGAGATCTCCACCAACTTGTCACCCACGACCT | + |
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Preference number: 6 (lower is better) Translates to: ASCLRAHRSHPR*WRSPPTCHPRP Trigger: AGGTCGTGGGTGACAAGTTGGTGGAGATCTCCACCATCGGGGATGTGACCTATGAGCGCGTAAGCAAGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS CAA 90 bp | GACCAGGTGAAGTCCTGTCCGTCCTGCTGGACCTCTGTGATGATCTaGAAGTTACGTCCCCTTTCAATCACGTCTCCTGGAAGACCCAGG | + |
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Preference number: 6 (lower is better) Translates to: DQVKSCPSCWTSVMI*KLRPLSITSPGRPR Trigger: CCTGGGTCTTCCAGGAGACGTGATTGAAAGGGGACGTAACTTCAAGATCATCACAGAGGTCCAGCAGGACGGACAGGACTTCACCTGGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS CAA 72 bp | AAGTCCTGTCCGTCCTGCTGGACCTCTGTGATGATCTaGAAGTTACGTCCCCTTTCAATCACGTCTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: KSCPSCWTSVMI*KLRPLSITSPG Trigger: TCCAGGAGACGTGATTGAAAGGGGACGTAACTTCAAGATCATCACAGAGGTCCAGCAGGACGGACAGGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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| CDS TCA 72 bp | TTTCAATCACGTCTCCTGGAAGACCCAGGCGCTTCATaGACTCATCGTAATTCTTCTCACTCTCAAATTCAT | + |
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Preference number: 6 (lower is better) Translates to: FQSRLLEDPGAS*THRNSSHSQIH Trigger: ATGAATTTGAGAGTGAGAAGAATTACGATGAGTTCATGAAGCGCCTGGGTCTTCCAGGAGACGTGATTGAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020672.5 |
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