Pregenerated sensors for FABP5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027533Ensembl transcript IDs: ENSMUST00000029046.9
Found 12 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACCAAAGAAGTGAAGCTGTTTGTTGCATTTGACCGCTCACTGAATTaGGCATATTCACTCTGGCAGCTAACTCCTGTCCAGGATGACGAG | + |
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Preference number: 1 (lower is better) Translates to: TKEVKLFVAFDRSLN*AYSLWQLTPVQDDE Trigger: CTCGTCATCCTGGACAGGAGTTAGCTGCCAGAGTGAATATGCTCAATTCAGTGAGCGGTCAAATGCAACAAACAGCTTCACTTCTTTGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR-3UTR TCA 90 bp | CGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACTGCAAAAGAAGCTGGAGTCATAAGGGATCCTaGAGAATACCAGAGAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: RFKASLNDGACIHCKRSWSHKGS*RIPESF Trigger: AAAGCTCTCTGGTATTCTTCAGGATCCCTTATGACT...CCAGCTTCTTTTGCAGTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR-3UTR TCA 90 bp | GAGTTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTGCTGTTTGTTGCATTTaGCCGCTCACTGAATTGAGC | + |
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Preference number: 2 (lower is better) Translates to: ELTKFKRFKASLNDGACIAVCCI*PLTELS Trigger: GCTCAATTCAGTGAGCGGTCAAATGCAACAAACAGC...AATACATGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAACTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR-3UTR TCA 90 bp | CGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACTGCAAAAGAAGCTGGCAATTTTCAATTCCTTaGAGAACCCACACACATATC | + |
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Preference number: 2 (lower is better) Translates to: RFKASLNDGACIHCKRSWQFSIP*RTHTHI Trigger: GATATGTGTGTGGGTTCTTCAAGGAATTGAAAATTG...CCAGCTTCTTTTGCAGTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR-3UTR TCA 90 bp | TTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACTGGGTAAACCAAGTTTaGCATGAAGGTCCATGTAAA | + |
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Preference number: 2 (lower is better) Translates to: LTKFKRFKASLNDGACIHWVNQV*HEGPCK Trigger: TTTACATGGACCTTCATGTCAAACTTGGTTTACCCA...GTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR-3UTR CAA 90 bp | GAGTTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCCAATTTTCAATTCCTaGAAGAACCCACACACATAT | + |
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Preference number: 3 (lower is better) Translates to: ELTKFKRFKASLNDGACIPIFNS*KNPHTY Trigger: ATATGTGTGTGGGTTCTTCAAGGAATTGAAAATTGG...AATACATGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAACTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| 3UTR TCA 72 bp | TACAAGTTGCTAGGATATATCAGTCATAAGGGATCCTaGAGAATACCAGAGAGCTTTTCAATTTCTAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: YKLLGYISHKGS*RIPESFSISKC Trigger: ACACTTAGAAATTGAAAAGCTCTCTGGTATTCTTCAGGATCCCTTATGACTGATATATCCTAGCAACTTGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| CDS-3UTR GCA 90 bp | ATTATTGAGTTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATCCTTCCCGTCCCATTaGTGGTGCTGGACCAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: IIELTKFKRFKASLNDGASFPSH*WCWTRA Trigger: TGCCCTGGTCCAGCACCAGCAATGGGACGGGAAGGA...TGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAACTCAATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| CDS-3UTR CCA 90 bp | ATTATTGAGTTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATCCCATTGCTGGTGCTaGACCAGGGCACCGTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: IIELTKFKRFKASLNDGASHCWC*TRAPSW Trigger: CCAAGACGGTGCCCTGGTCCAGCACCAGCAATGGGA...TGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAACTCAATAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| CDS-3UTR CCA 90 bp | TTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACCGTAATGATACAGTCTaGCTTGGCCATGGCAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: LTKFKRFKASLNDGACIHRNDTV*LGHGSH Trigger: ATGGCTGCCATGGCCAAGCCAGACTGTATCATTACG...GTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| CDS-3UTR TCA 90 bp | TTGACAAAGTTCAAACGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACAGGTGGCATTGTTCATaGCACACTCCACGATCATCT | + |
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Preference number: 4 (lower is better) Translates to: LTKFKRFKASLNDGACIHRWHCS*HTPRSS Trigger: AGATGATCGTGGAGTGTGTCATGAACAATGCCACCT...GTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCGTTTGAACTTTGTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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| CDS-3UTR CAA 90 bp | CGATTTAAGGCAAGCTTAAATGACGGGGCATGTATTCACTGCAAAAGAAGCTGGATGATACAGTCTGGCTaGGCCATGGCAGCCATCTTC | + |
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Preference number: 5 (lower is better) Translates to: RFKASLNDGACIHCKRSWMIQSG*AMAAIF Trigger: GAAGATGGCTGCCATGGCCAAGCCAGACTGTATCAT...CCAGCTTCTTTTGCAGTGAATACATGCCCCGTCATTTAAGCTTGCCTTAAATCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029046.9 |
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