Pregenerated sensors for FABP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028773Ensembl transcript IDs: ENSMUST00000070532.8
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGGTCCAGGCTGATGCCCCGTATCTCCAGAAAAATCCCAACCCAAGAATGTTTAGAGGCAGCATGGTGCTaGGCTGAGGGGTGGCCAGTT | + |
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Preference number: 2 (lower is better) Translates to: GSRLMPRISRKIPTQECLEAAWC*AEGWPV Trigger: AACTGGCCACCCCTCAGCTCAGCACCATGCTGCCTC...TAAACATTCTTGGGTTGGGATTTTTCTGGAGATACGGGGCATCAGCCTGGACCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| 3UTR-3UTR CAA 90 bp | AACCACATACATAGTAGGAACTGGGTCCAGGCTGATGCCCCGTATCTCCAGAAACTGAGGGGTGGCCAGTaGGCAGAGGAGCGGGCGGTC | + |
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Preference number: 3 (lower is better) Translates to: NHIHSRNWVQADAPYLQKLRGGQ*AEERAV Trigger: GACCGCCCGCTCCTCTGCCAACTGGCCACCCCTCAG...TTTCTGGAGATACGGGGCATCAGCCTGGACCCAGTTCCTACTATGTATGTGGTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR GCA 90 bp | GAGCTGAGGGGTGGCCAGTTGGCAGAGGAGCGGGCGGTCAGTGACGGAGCAGCCGTTAGTGTTGTCTCCTaGCCGTTCCACTTCTGCACA | + |
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Preference number: 4 (lower is better) Translates to: ELRGGQLAEERAVSDGAAVSVVS*PFHFCT Trigger: TGTGCAGAAGTGGAACGGGCAGGAGACAACACTAAC...GGCTGCTCCGTCACTGACCGCCCGCTCCTCTGCCAACTGGCCACCCCTCAGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR TCA 90 bp | GAGCTGAGGGGTGGCCAGTTGGCAGAGGAGCGGGCGGTCAGTGACGGAGCAGCCAACTCTATTCCCAGCTaGAAGTTGATCTCTGTGTTC | + |
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Preference number: 4 (lower is better) Translates to: ELRGGQLAEERAVSDGAANSIPS*KLISVF Trigger: GAACACAGAGATCAACTTTCAGCTGGGAATAGAGTT...GGCTGCTCCGTCACTGACCGCCCGCTCCTCTGCCAACTGGCCACCCCTCAGCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR TCA 90 bp | GGGTCCAGGCTGATGCCCCGTATCTCCAGAAAAATCCCAACCCAAGAATGTTTAACTTCTGCACATGGATaGGTTTGCCTCCGTCCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: GSRLMPRISRKIPTQECLTSAHG*VCLRPA Trigger: CGCTGGACGGAGGCAAACTCATCCATGTGCAGAAGT...TAAACATTCTTGGGTTGGGATTTTTCTGGAGATACGGGGCATCAGCCTGGACCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR TCA 90 bp | ACTGGGTCCAGGCTGATGCCCCGTATCTCCAGAAAAATCCCAACCCAAGAATGTCTCACCACACTGCCATaGGTGAGAGTCAGGATGAGT | + |
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Preference number: 4 (lower is better) Translates to: TGSRLMPRISRKIPTQECLTTLP*VRVRMS Trigger: ACTCATCCTGACTCTCACTCATGGCAGTGTGGTGAG...ACATTCTTGGGTTGGGATTTTTCTGGAGATACGGGGCATCAGCCTGGACCCAGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR GCA 90 bp | AACCACATACATAGTAGGAACTGGGTCCAGGCTGATGCCCCGTATCTCCAGAAATGCCCGTTCCACTTCTaGACATGGATGAGTTTGCCT | + |
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Preference number: 4 (lower is better) Translates to: NHIHSRNWVQADAPYLQKCPFHF*TWMSLP Trigger: AGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCA...TTTCTGGAGATACGGGGCATCAGCCTGGACCCAGTTCCTACTATGTATGTGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR GCA 90 bp | CCCGTATCTCCAGAAAAATCCCAACCCAAGAATGTTTATACAAAATGTCAGAGGTCTCATAAGTCCGAGTaGTCACCACACTGCCATGAG | + |
|
Preference number: 4 (lower is better) Translates to: PVSPEKSQPKNVYTKCQRSHKSE*SPHCHE Trigger: CTCATGGCAGTGTGGTGAGCACTCGGACTTATGAGA...CCTCTGACATTTTGTATAAACATTCTTGGGTTGGGATTTTTCTGGAGATACGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS CCA 90 bp | AGCTCCCTAGTTAGTGTTGTCTCCTGCCCGTTCCACTTCTGCACATaGATGAGTTTGCCTCCGTCCAGCGTCACCAGTGACTTGACCTTC | + |
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Preference number: 5 (lower is better) Translates to: SSLVSVVSCPFHFCT*MSLPPSSVTSDLTF Trigger: GAAGGTCAAGTCACTGGTGACGCTGGACGGAGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCAGGAGACAACACTAACTAGGGAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR CAA 90 bp | CCCGTATCTCCAGAAAAATCCCAACCCAAGAATGTTTATACAAAATGTCAGAGGATGATGGTAGTAGGCTaGGTCATGCTAGCCACCTGC | + |
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Preference number: 5 (lower is better) Translates to: PVSPEKSQPKNVYTKCQRMMVVG*VMLATC Trigger: GCAGGTGGCTAGCATGACCAAGCCTACTACCATCAT...CCTCTGACATTTTGTATAAACATTCTTGGGTTGGGATTTTTCTGGAGATACGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS-3UTR CAA 90 bp | GGCCTTGGTTCTGCTTTATTGACCTTGGAGCACCCTTTGGATACAGTTTTAAAAGTTCTTGAAGGTACTTaGTGTCTTTATGGTGATAGT | + |
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Preference number: 5 (lower is better) Translates to: GLGSALLTLEHPLDTVLKVLEGT*CLYGDS Trigger: ACTATCACCATAAAGACACAAAGTACCTTCAAGAAC...TTTTAAAACTGTATCCAAAGGGTGCTCCAAGGTCAATAAAGCAGAACCAAGGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS CAA 72 bp | GTCTCCTGCCCGTTCCACTTCTGCACATGGATGAGTTaGCCTCCGTCCAGCGTCACCAGTGACTTGACCTTC | + |
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Preference number: 6 (lower is better) Translates to: VSCPFHFCTWMS*PPSSVTSDLTF Trigger: GAAGGTCAAGTCACTGGTGACGCTGGACGGAGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCAGGAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS GCA 72 bp | TCCCTAGTTAGTGTTGTCTCCTGCCCGTTCCACTTCTaGACATGGATGAGTTTGCCTCCGTCCAGCGTCACC | + |
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Preference number: 6 (lower is better) Translates to: SLVSVVSCPFHF*TWMSLPPSSVT Trigger: GGTGACGCTGGACGGAGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCAGGAGACAACACTAACTAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS CAA 90 bp | GTTAGTGTTGTCTCCTGCCCGTTCCACTTCTGCACATGGATGAGTTaGCCTCCGTCCAGCGTCACCAGTGACTTGACCTTCCGGTCATCT | + |
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Preference number: 6 (lower is better) Translates to: VSVVSCPFHFCTWMS*PPSSVTSDLTFRSS Trigger: AGATGACCGGAAGGTCAAGTCACTGGTGACGCTGGACGGAGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCAGGAGACAACACTAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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| CDS GCA 72 bp | TTCCCGTCAACTAGCTCCCTAGTTAGTGTTGTCTCCTaGCCGTTCCACTTCTGCACATGGATGAGTTTGCCT | + |
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Preference number: 6 (lower is better) Translates to: FPSTSSLVSVVS*PFHFCTWMSLP Trigger: AGGCAAACTCATCCATGTGCAGAAGTGGAACGGGCAGGAGACAACACTAACTAGGGAGCTAGTTGACGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000070532.8 |
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