Pregenerated sensors for F9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031138Ensembl transcript IDs: ENSMUST00000033477.5
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGGAGAATTGGGTACATCTCTGTATCAAGAACCATCACGCCTTATaGGCAACACGGAAAGCTTTACTTTCTAATTTTAACAAGGGCTGG | + |
|
Preference number: 1 (lower is better) Translates to: RENWVHLCIKNHHAL*ATRKALLSNFNKGW Trigger: CCAGCCCTTGTTAAAATTAGAAAGTAAAGCTTTCCGTGTTGCCCATAAGGCGTGATGGTTCTTGATACAGAGATGTACCCAATTCTCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR-3UTR CCA 90 bp | GGTGGCAGTGACAAGGGGTTCAAACCAATTATGCATCACTACAAAGGTCCAGATGAGGTCAGTGATTTGTaGTTTGGGAGTTGTAAAAGA | + |
|
Preference number: 2 (lower is better) Translates to: GGSDKGFKPIMHHYKGPDEVSDL*FGSCKR Trigger: TCTTTTACAACTCCCAAACCACAAATCACTGACCTC...ATCTGGACCTTTGTAGTGATGCATAATTGGTTTGAACCCCTTGTCACTGCCACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR-3UTR CCA 90 bp | TGCACTGTTGAAGTATTCCTAGAAAGTTCAGCTGCTTCTAGGTTAAAAACTGCCGTACCTAGGCTGTCCTaGAACTCATATAGCTTCCTC | + |
|
Preference number: 2 (lower is better) Translates to: CTVEVFLESSAASRLKTAVPRLS*NSYSFL Trigger: GAGGAAGCTATATGAGTTCCAGGACAGCCTAGGTAC...GGCAGTTTTTAACCTAGAAGCAGCTGAACTTTCTAGGAATACTTCAACAGTGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR-3UTR CCA 90 bp | AAACATGAATTGCTGCCAAGGAGGGAGAATTGGGTACATCTCTGTATCAAGAACAATATAGATCCTAGATaGGCTTGTCTTATGCACAGA | + |
|
Preference number: 2 (lower is better) Translates to: KHELLPRRENWVHLCIKNNIDPR*ACLMHR Trigger: TCTGTGCATAAGACAAGCCCATCTAGGATCTATATT...GTTCTTGATACAGAGATGTACCCAATTCTCCCTCCTTGGCAGCAATTCATGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR-3UTR CCA 90 bp | AAACATGAATTGCTGCCAAGGAGGGAGAATTGGGTACATCTCTGTATCAAGAACAATTTTAACAAGGGCTaGACTTACAGAAATGGTGAA | + |
|
Preference number: 2 (lower is better) Translates to: KHELLPRRENWVHLCIKNNFNKG*TYRNGE Trigger: TTCACCATTTCTGTAAGTCCAGCCCTTGTTAAAATT...GTTCTTGATACAGAGATGTACCCAATTCTCCCTCCTTGGCAGCAATTCATGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR GCA 72 bp | AAATGGGCAAGTCAGTTGGCCATTTGCAATGACTCTTaGAGCCTTGAGCCTGCTGTGAGAGACATGACCCTT | + |
|
Preference number: 3 (lower is better) Translates to: KWASQLAICNDS*SLEPAVRDMTL Trigger: AAGGGTCATGTCTCTCACAGCAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CCA 72 bp | ACCGGTGAGAAGAAAACCATAAATGGGCAAGTCAGTTaGCCATTTGCAATGACTCTTGCAGCCTTGAGCCTG | + |
|
Preference number: 3 (lower is better) Translates to: TGEKKTINGQVS*PFAMTLAALSL Trigger: CAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTTATGGTTTTCTTCTCACCGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CCA 72 bp | GAGCTAAAACATGAATTGCTGCCAAGGAGGGAGAATTaGGTACATCTCTGTATCAAGAACCATCACGCCTTA | + |
|
Preference number: 3 (lower is better) Translates to: ELKHELLPRREN*VHLCIKNHHAL Trigger: TAAGGCGTGATGGTTCTTGATACAGAGATGTACCCAATTCTCCCTCCTTGGCAGCAATTCATGTTTTAGCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR GCA 72 bp | GGGCAGGTGGCAGTGACAAGGGGTTCAAACCAATTATaGATCACTACAAAGGTCCAGATAAGTATTAAAATG | + |
|
Preference number: 3 (lower is better) Translates to: GQVAVTRGSNQL*ITTKVQISIKM Trigger: CATTTTAATACTTATCTGGACCTTTGTAGTGATGCATAATTGGTTTGAACCCCTTGTCACTGCCACCTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CCA 72 bp | AGGGAAGGTGAGAATGACGGAGAGGTCAGTGATTTGTaGTTTGGGAGTTGTAAAAGATACAAGATTCAGAAA | + |
|
Preference number: 3 (lower is better) Translates to: REGENDGEVSDL*FGSCKRYKIQK Trigger: TTTCTGAATCTTGTATCTTTTACAACTCCCAAACCACAAATCACTGACCTCTCCGTCATTCTCACCTTCCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR TCA 72 bp | AATATGACAGTGTTAATTACAATAACAGTTTACCGGTaGGAAGAAAACCATAAATGGGCAAGTCAGTTGGCC | + |
|
Preference number: 3 (lower is better) Translates to: NMTVLITITVYR*EENHKWASQLA Trigger: GGCCAACTGACTTGCCCATTTATGGTTTTCTTCTCACCGGTAAACTGTTATTGTAATTAACACTGTCATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CCA 72 bp | ACACGGAAAGCTTTACTTTCTAATTTTAACAAGGGCTaGACTTACAGAAATGGTGAATCTCTTACTAAACTA | + |
|
Preference number: 3 (lower is better) Translates to: TRKALLSNFNKG*TYRNGESLTKL Trigger: TAGTTTAGTAAGAGATTCACCATTTCTGTAAGTCCAGCCCTTGTTAAAATTAGAAAGTAAAGCTTTCCGTGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | TCAAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCCTTTTCCCCAGCCACTaGCATAGCCAGAACCAAACT | + |
|
Preference number: 4 (lower is better) Translates to: SRPGFSVYLGCPGTHIASLFPSH*HSQNQT Trigger: AGTTTGGTTCTGGCTATGTCAGTGGCTGGGGAAAAG...GGAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | ATAAATGGGCAAGTCAGTTGGCCATTTGCAATGACTCTTGCAGCCTTGAGCCTGCCTGTCTCCCTTTGTTaGAGACTTTTCCCCAGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: INGQVSWPFAMTLAALSLPVSLC*RLFPSH Trigger: GTGGCTGGGGAAAAGTCTTCAACAAAGGGAGACAGG...CAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTTAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR GCA 90 bp | ATAAATGGGCAAGTCAGTTGGCCATTTGCAATGACTCTTGCAGCCTTGAGCCTGGGACTTCTGGTCTTCTaGAAGTTGGTATCCCTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: INGQVSWPFAMTLAALSLGLLVF*KLVSLS Trigger: ACTGAGGGATACCAACTTGCAGAAGACCAGAAGTCC...CAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CCA 90 bp | TCAAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCTGGAAATGGAACTGTTaGTTCACAGGACTTCTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: SRPGFSVYLGCPGTHIASWKWNC*FTGLLV Trigger: GACCAGAAGTCCTGTGAACCAACAGTTCCATTTCCA...GGAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CCA 90 bp | CTGCCAAGGAGGGAGAATTGGGTACATCTCTGTATCAAGAACCATCACGCCTTAGGCTCTATCCACCAGTaGAACTCTAAGGTACTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: LPRRENWVHLCIKNHHALGSIHQ*NSKVLK Trigger: CTTCAGTACCTTAGAGTTCCACTGGTGGATAGAGCC...TAAGGCGTGATGGTTCTTGATACAGAGATGTACCCAATTCTCCCTCCTTGGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CCA 90 bp | CAGGTGGCAGTGACAAGGGGTTCAAACCAATTATGCATCACTACAAAGGTCCAGTCTACTTCAGTAACATaGGGTCCCCCACTATCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QVAVTRGSNQLCITTKVQSTSVT*GPPLSP Trigger: AGGAGATAGTGGGGGACCCCATGTTACTGAAGTAGA...CTGGACCTTTGTAGTGATGCATAATTGGTTTGAACCCCTTGTCACTGCCACCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR GCA 90 bp | ATAAATGGGCAAGTCAGTTGGCCATTTGCAATGACTCTTGCAGCCTTGAGCCTGGATTTGACCCGGTTTTaGGTTTTCTCCACCAACAAC | + |
|
Preference number: 4 (lower is better) Translates to: INGQVSWPFAMTLAALSLDLTRF*VFSTNN Trigger: GTTGTTGGTGGAGAAAACGCAAAACCGGGTCAAATC...CAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR GCA 90 bp | TCAAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCTCCTTCACGGTAGCCTaGACAGAACATGTTGTTATA | + |
|
Preference number: 4 (lower is better) Translates to: SRPGFSVYLGCPGTHIASSFTVA*TEHVVI Trigger: TATAACAACATGTTCTGTGCAGGCTACCGTGAAGGA...GGAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CCA 90 bp | TCTCTCTCTCTCTCTCTCCCCACTCTCTCTTTTCTTTCAAGACCGGGTTTCTCTAGAAGCTCTCCCACATaGAAATGGAACTGTTGGTTC | + |
|
Preference number: 4 (lower is better) Translates to: SLSLSLPTLSFLSRPGFSRSSPT*KWNCWF Trigger: GAACCAACAGTTCCATTTCCATGTGGGAGAGCTTCT...AGAGAAACCCGGTCTTGAAAGAAAAGAGAGAGTGGGGAGAGAGAGAGAGAGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | TTCAAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCTGCACATTCGGTACTaGGTAGATATCCTAAAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: FKTGFLCVPRLSWNSYSFLHIRY*VDILKG Trigger: TCCTTTTAGGATATCTACTCAGTACCGAATGTGCAG...GAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | TCTCTCTCTCTCTCTCTCCCCACTCTCTCTTTTCTTTCAAGACCGGGTTTCTCTGGATTTGATTCACACTaGTCTCCATCAACATACTGC | + |
|
Preference number: 4 (lower is better) Translates to: SLSLSLPTLSFLSRPGFSGFDSH*SPSTYC Trigger: GCAGTATGTTGATGGAGATCAGTGTGAATCAAATCC...AGAGAAACCCGGTCTTGAAAGAAAAGAGAGAGTGGGGAGAGAGAGAGAGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | AAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCTCCTTTTTAGAACTGTATaGAATAGAAGCTCTCCCACA | + |
|
Preference number: 4 (lower is better) Translates to: KTGFLCVPRLSWNSYSFLLFRTV*NRSSPT Trigger: TGTGGGAGAGCTTCTATTTCATACAGTTCTAAAAAG...GAGGAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CAA 72 bp | GAAAGGGAAGGTGAGAATGACGGAGAGGTCAGTGATTaGTGGTTTGGGAGTTGTAAAAGATACAAGATTCAG | + |
|
Preference number: 4 (lower is better) Translates to: EREGENDGEVSD*WFGSCKRYKIQ Trigger: CTGAATCTTGTATCTTTTACAACTCCCAAACCACAAATCACTGACCTCTCCGTCATTCTCACCTTCCCTTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| 3UTR CAA 72 bp | AAAATTGAGAGTAGCAAGGAAGAGCTAAAACATGAATaGCTGCCAAGGAGGGAGAATTGGGTACATCTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: KIESSKEELKHE*LPRRENWVHLC Trigger: ACAGAGATGTACCCAATTCTCCCTCCTTGGCAGCAATTCATGTTTTAGCTCTTCCTTGCTACTCTCAATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | GACGGAGAGGTCAGTGATTTGTGGTTTGGGAGTTGTAAAAGATACAAGATTCAGTCAGTGATGTCATCTTaGATGAATACAGCTTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: DGEVSDLWFGSCKRYKIQSVMSS*MNTASV Trigger: TACTGAAGCTGTATTCATTCAAGATGACATCACTGA...CTGAATCTTGTATCTTTTACAACTCCCAAACCACAAATCACTGACCTCTCCGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR TCA 90 bp | GACGGAGAGGTCAGTGATTTGTGGTTTGGGAGTTGTAAAAGATACAAGATTCAGAGTGAAGTCATTAAGTaGTTCACTACTTTCAGTGAC | + |
|
Preference number: 4 (lower is better) Translates to: DGEVSDLWFGSCKRYKIQSEVIK*FTTFSD Trigger: GTCACTGAAAGTAGTGAATCACTTAATGACTTCACT...CTGAATCTTGTATCTTTTACAACTCCCAAACCACAAATCACTGACCTCTCCGTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR GCA 90 bp | AACCAATTATGCATCACTACAAAGGTCCAGATAAGTATTAAAATGCCAGTTCACATATTTGCCTTTCATTaGACATTCTTCACCCCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: NQLCITTKVQISIKMPVHIFAFH*TFFTPA Trigger: AGCTGGGGTGAAGAATGTGCAATGAAAGGCAAATAT...GTGAACTGGCATTTTAATACTTATCTGGACCTTTGTAGTGATGCATAATTGGTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | GAAAGGGAAGGTGAGAATGACGGAGAGGTCAGTGATTTGTGGTTTGGGAGTTGTCTGGTCTTCTGCAAGTaGGTATCCCTCAGTGCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: EREGENDGEVSDLWFGSCLVFCK*VSLSAG Trigger: TCCTGCACTGAGGGATACCAACTTGCAGAAGACCAG...ACAACTCCCAAACCACAAATCACTGACCTCTCCGTCATTCTCACCTTCCCTTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | TCAAGACCGGGTTTCTCTGTGTACCTAGGCTGTCCTGGAACTCATATAGCTTCCTCCTTCAAATCCAACTaGGCACCAGCATTCATAGGA | + |
|
Preference number: 5 (lower is better) Translates to: SRPGFSVYLGCPGTHIASSFKSN*APAFIG Trigger: TCCTATGAATGCTGGTGCCAAGTTGGATTTGAAGGA...GGAAGCTATATGAGTTCCAGGACAGCCTAGGTACACAGAGAAACCCGGTCTTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | GGAGGGAGAATTGGGTACATCTCTGTATCAAGAACCATCACGCCTTATGGGCAAGGACGGGTAAGAATTTaGGTGGCATTTTCACGATCA | + |
|
Preference number: 5 (lower is better) Translates to: GGRIGYISVSRTITPYGQGRVRI*VAFSRS Trigger: TGATCGTGAAAATGCCACCAAAATTCTTACCCGTCC...TTGCCCATAAGGCGTGATGGTTCTTGATACAGAGATGTACCCAATTCTCCCTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | ATAAATGGGCAAGTCAGTTGGCCATTTGCAATGACTCTTGCAGCCTTGAGCCTGATCAGTGATGTCATCTaGAATGAATACAGCTTCAGT | + |
|
Preference number: 5 (lower is better) Translates to: INGQVSWPFAMTLAALSLISDVI*NEYSFS Trigger: ACTGAAGCTGTATTCATTCAAGATGACATCACTGAT...CAGGCTCAAGGCTGCAAGAGTCATTGCAAATGGCCAACTGACTTGCCCATTTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | CAGGTGGCAGTGACAAGGGGTTCAAACCAATTATGCATCACTACAAAGGTCCAGTTTGTATATTCCCTATaGGCAACACAGATAGGTGTT | + |
|
Preference number: 5 (lower is better) Translates to: QVAVTRGSNQLCITTKVQFVYSL*ATQIGV Trigger: AACACCTATCTGTGTTGCCAATAGGGAATATACAAA...CTGGACCTTTGTAGTGATGCATAATTGGTTTGAACCCCTTGTCACTGCCACCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | TGCACTGTTGAAGTATTCCTAGAAAGTTCAGCTGCTTCTAGGTTAAAAACTGCCATGGAAATGGAACTGTaGGTTCACAGGACTTCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: CTVEVFLESSAASRLKTAMEMEL*VHRTSG Trigger: ACCAGAAGTCCTGTGAACCAACAGTTCCATTTCCAT...GGCAGTTTTTAACCTAGAAGCAGCTGAACTTTCTAGGAATACTTCAACAGTGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS-3UTR CAA 90 bp | GACGGAGAGGTCAGTGATTTGTGGTTTGGGAGTTGTAAAAGATACAAGATTCAGTTTTCCTTAATCCAGTaGACGTACCGGGAAACCTTA | + |
|
Preference number: 5 (lower is better) Translates to: DGEVSDLWFGSCKRYKIQFSLIQ*TYRETL Trigger: TAAGGTTTCCCGGTACGTCAACTGGATTAAGGAAAA...CTGAATCTTGTATCTTTTACAACTCCCAAACCACAAATCACTGACCTCTCCGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS CCA 90 bp | TATTCACCAGCAACAACCTCAATTTTATCACCAGGTTTAAGACAGTaGGCAGCAGTTACAATCCATTTTTCATTAATGATGGCACCTCCA | + |
|
Preference number: 5 (lower is better) Translates to: YSPATTSILSPGLRQ*AAVTIHFSLMMAPP Trigger: TGGAGGTGCCATCATTAATGAAAAATGGATTGTAACTGCTGCCCACTGTCTTAAACCTGGTGATAAAATTGAGGTTGTTGCTGGTGAATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS TCA 90 bp | ATTAGAGAAAACAGTCTCAGCTCTCGTGATCTTTTTAGAACTGTATaGAATAGAAGCTCTCCCACATGGAAATGGAACTGTTGGTTCACA | + |
|
Preference number: 5 (lower is better) Translates to: IRENSLSSRDLFRTV*NRSSPTWKWNCWFT Trigger: TGTGAACCAACAGTTCCATTTCCATGTGGGAGAGCTTCTATTTCATACAGTTCTAAAAAGATCACGAGAGCTGAGACTGTTTTCTCTAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS GCA 90 bp | ATCCAGTTCCAGCAAGGCAATGTCATGACTATACTTATTAATAGTTaGATTGTACTGGTGATGAGGGATAGTTCGAATCACATTTCTCCT | + |
|
Preference number: 5 (lower is better) Translates to: IQFQQGNVMTILINS*IVLVMRDSSNHISP Trigger: AGGAGAAATGTGATTCGAACTATCCCTCATCACCAGTACAATGCAACTATTAATAAGTATAGTCATGACATTGCCTTGCTGGAACTGGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS CAA 90 bp | TGGAAATGGAACTGTTGGTTCACAGGACTTCTGGTCTTCTGCAAGTaGGTATCCCTCAGTGCAGGAACAAATTACCTTGTTATCAGGACT | + |
|
Preference number: 6 (lower is better) Translates to: WKWNCWFTGLLVFCK*VSLSAGTNYLVIRT Trigger: AGTCCTGATAACAAGGTAATTTGTTCCTGCACTGAGGGATACCAACTTGCAGAAGACCAGAAGTCCTGTGAACCAACAGTTCCATTTCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS GCA 72 bp | AAATGGAACTGTTGGTTCACAGGACTTCTGGTCTTCTaGAAGTTGGTATCCCTCAGTGCAGGAACAAATTAC | + |
|
Preference number: 6 (lower is better) Translates to: KWNCWFTGLLVF*KLVSLSAGTNY Trigger: GTAATTTGTTCCTGCACTGAGGGATACCAACTTGCAGAAGACCAGAAGTCCTGTGAACCAACAGTTCCATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS CAA 72 bp | AACTGTTGGTTCACAGGACTTCTGGTCTTCTGCAAGTaGGTATCCCTCAGTGCAGGAACAAATTACCTTGTT | + |
|
Preference number: 6 (lower is better) Translates to: NCWFTGLLVFCK*VSLSAGTNYLV Trigger: AACAAGGTAATTTGTTCCTGCACTGAGGGATACCAACTTGCAGAAGACCAGAAGTCCTGTGAACCAACAGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS GCA 72 bp | AGGACTTCTGGTCTTCTGCAAGTTGGTATCCCTCAGTaGAGGAACAAATTACCTTGTTATCAGGACTGTTTT | + |
|
Preference number: 6 (lower is better) Translates to: RTSGLLQVGIPQ*RNKLPCYQDCF Trigger: AAAACAGTCCTGATAACAAGGTAATTTGTTCCTGCACTGAGGGATACCAACTTGCAGAAGACCAGAAGTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS TCA 72 bp | AACAGTCTCAGCTCTCGTGATCTTTTTAGAACTGTATaGAATAGAAGCTCTCCCACATGGAAATGGAACTGT | + |
|
Preference number: 6 (lower is better) Translates to: NSLSSRDLFRTV*NRSSPTWKWNC Trigger: ACAGTTCCATTTCCATGTGGGAGAGCTTCTATTTCATACAGTTCTAAAAAGATCACGAGAGCTGAGACTGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||
| CDS GCA 72 bp | CAGCAAGGCAATGTCATGACTATACTTATTAATAGTTaGATTGTACTGGTGATGAGGGATAGTTCGAATCAC | + |
|
Preference number: 6 (lower is better) Translates to: QQGNVMTILINS*IVLVMRDSSNH Trigger: GTGATTCGAACTATCCCTCATCACCAGTACAATGCAACTATTAATAAGTATAGTCATGACATTGCCTTGCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033477.5 |
||