Pregenerated sensors for F8A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078317Ensembl transcript IDs: ENSMUST00000105111.4
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTAATTGTGTTGTGGTACACAGTGAGAGCAATCAAAACCCTGGTTTaGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCC | + |
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Preference number: 1 (lower is better) Translates to: VIVLWYTVRAIKTLV*KQRTNSKNFDSSLA Trigger: GGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCAGGGTTTTGATTGCTCTCACTGTGTACCACAACACAATTAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CCA 90 bp | AGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAAAACTTCTaGATAACAGAAATTTGCTGCAACCCAATAAAGGCAGGATCACCA | + |
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Preference number: 1 (lower is better) Translates to: RTNSKNFDSSLAKNF*ITEICCNPIKAGSP Trigger: TGGTGATCCTGCCTTTATTGGGTTGCAGCAAATTTCTGTTATCCAGAAGTTTTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR TCA 90 bp | CTGCAACCCAATAAAGGCAGGATCACCAAAAGATCACAGATGCTACTCAGGAGACTAAATACTTCTTGGTaGTGCCACACCCCACCAGGA | + |
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Preference number: 2 (lower is better) Translates to: LQPNKGRITKRSQMLLRRLNTSW*CHTPPG Trigger: TCCTGGTGGGGTGTGGCATCACCAAGAAGTATTTAG...TCTCCTGAGTAGCATCTGTGATCTTTTGGTGATCCTGCCTTTATTGGGTTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR TCA 90 bp | GGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAAAACTTCTGAACATCTGTCCTCCTaGGTTTATTGGCACTATACC | + |
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Preference number: 2 (lower is better) Translates to: GNRGPILKTLTHLLPKTSEHLSS*VYWHYT Trigger: GGTATAGTGCCAATAAACTCAGGAGGACAGATGTTC...AGAAGTTTTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTGTGCTGGGTGCCTTAAACCAAGATTCAATATATGACACCATATTTCTGCTTGCCAAAAACTTCTaGATAACAGAAATTTGCTGC | + |
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Preference number: 2 (lower is better) Translates to: AGVLGALNQDSIYDTIFLLAKNF*ITEICC Trigger: GCAGCAAATTTCTGTTATCCAGAAGTTTTTGGCAAG...CAGAAATATGGTGTCATATATTGAATCTTGGTTTAAGGCACCCAGCACACCTGC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR CCA 90 bp | ACTATACCTAGAACAGCCAGGAAAATGAATCAACATTATCTAGCAACTGACAGACGAGGCAATAATGGATaGAATTGGAGGGCACTAATT | + |
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Preference number: 2 (lower is better) Translates to: TIPRTARKMNQHYLATDRRGNNG*NWRALI Trigger: AATTAGTGCCCTCCAATTCCATCCATTATTGCCTCG...TCTGTCAGTTGCTAGATAATGTTGATTCATTTTCCTGGCTGTTCTAGGTATAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR GCA 90 bp | TTCTGGATAACAGAAATTTGCTGCAACCCAATAAAGGCAGGATCACCAAAAGATCTAGCAACTGACAGATaGATAAAGAAAGATTACTCC | + |
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Preference number: 2 (lower is better) Translates to: FWITEICCNPIKAGSPKDLATDR*IKKDYS Trigger: GGAGTAATCTTTCTTTATGCATCTGTCAGTTGCTAG...ATCTTTTGGTGATCCTGCCTTTATTGGGTTGCAGCAAATTTCTGTTATCCAGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CCA 72 bp | CCAAAAGATCACAGATGCTACTCAGGAGAAAGGTTTTaGTCATTCCATCAGGAAGAACCTGGGCTAGCAGAG | + |
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Preference number: 3 (lower is better) Translates to: PKDHRCYSGERF*SFHQEEPGLAE Trigger: CTCTGCTAGCCCAGGTTCTTCCTGATGGAATGACCAAAACCTTTCTCCTGAGTAGCATCTGTGATCTTTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR GCA 72 bp | GACAATGTAGTGGGAAAACATTTAGGAAAGTTGGAATaGTACCCTTGCAGGTGTGCTGGGTGCCTTAAACCA | + |
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Preference number: 3 (lower is better) Translates to: DNVVGKHLGKLE*YPCRCAGCLKP Trigger: TGGTTTAAGGCACCCAGCACACCTGCAAGGGTAGCATTCCAACTTTCCTAAATGTTTTCCCACTACATTGTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR GCA 72 bp | GTGGGAAAACATTTAGGAAAGTTGGAATGCTACCCTTaGAGGTGTGCTGGGTGCCTTAAACCAAGATTCAAT | + |
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Preference number: 3 (lower is better) Translates to: VGKHLGKLECYP*RCAGCLKPRFN Trigger: ATTGAATCTTGGTTTAAGGCACCCAGCACACCTGCAAGGGTAGCATTCCAACTTTCCTAAATGTTTTCCCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CCA 72 bp | AAGACAGATCTCGATTGTACAGGGGTAATTGTGTTGTaGTACACAGTGAGAGCAATCAAAACCCTGGTTTGG | + |
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Preference number: 3 (lower is better) Translates to: KTDLDCTGVIVL*YTVRAIKTLVW Trigger: CCAAACCAGGGTTTTGATTGCTCTCACTGTGTACCACAACACAATTACCCCTGTACAATCGAGATCTGTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CCA 72 bp | TACCCCATAGGCCAATTACCAGCTGGCCTTATAGAATaGTGTTCTAACTTGGGGTTAAATAGGGTGACAATG | + |
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Preference number: 3 (lower is better) Translates to: YPIGQLPAGLIE*CSNLGLNRVTM Trigger: CATTGTCACCCTATTTAACCCCAAGTTAGAACACCATTCTATAAGGCCAGCTGGTAATTGGCCTATGGGGTA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR GCA 72 bp | AACCCAATAAAGGCAGGATCACCAAAAGATCACAGATaGTACTCAGGAGAAAGGTTTTGGTCATTCCATCAG | + |
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Preference number: 3 (lower is better) Translates to: NPIKAGSPKDHR*YSGERFWSFHQ Trigger: CTGATGGAATGACCAAAACCTTTCTCCTGAGTAGCATCTGTGATCTTTTGGTGATCCTGCCTTTATTGGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR CAA 90 bp | CTGGTTTGGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAACTCAGGAGAAAGGTTTaGGTCATTCCATCAGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: LVWKQRTNSKNFDSSLAKLRRKV*VIPSGR Trigger: TCTTCCTGATGGAATGACCAAAACCTTTCTCCTGAG...TTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CCA 72 bp | TTGTGGTACACAGTGAGAGCAATCAAAACCCTGGTTTaGAAACAGAGGACCAATTCTAAAAACTTTGACTCA | + |
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Preference number: 3 (lower is better) Translates to: LWYTVRAIKTLV*KQRTNSKNFDS Trigger: TGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCAGGGTTTTGATTGCTCTCACTGTGTACCACAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR-3UTR CAA 90 bp | AACATGTCAGTTCTGCTTATTAACATAGTCCTCATGTTCAGATACACAGAGTATTTTTCTAAATACTTCTaGGTGATGCCACACCCCACC | + |
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Preference number: 3 (lower is better) Translates to: NMSVLLINIVLMFRYTEYFSKYF*VMPHPT Trigger: GGTGGGGTGTGGCATCACCAAGAAGTATTTAGAAAA...ATACTCTGTGTATCTGAACATGAGGACTATGTTAATAAGCAGAACTGACATGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR TCA 72 bp | AACAGCCAGGAAAATGAATCAACATTATCTAGCAACTaGCAGATGCATAAAGAAAGATTACTCCGTAGAATC | + |
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Preference number: 3 (lower is better) Translates to: NSQENESTLSSN*QMHKERLLRRI Trigger: GATTCTACGGAGTAATCTTTCTTTATGCATCTGTCAGTTGCTAGATAATGTTGATTCATTTTCCTGGCTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR GCA 72 bp | AGGAAAATGAATCAACATTATCTAGCAACTGACAGATaGATAAAGAAAGATTACTCCGTAGAATCTCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: RKMNQHYLATDR*IKKDYSVESPP Trigger: TGGAGGAGATTCTACGGAGTAATCTTTCTTTATGCATCTGTCAGTTGCTAGATAATGTTGATTCATTTTCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR GCA 90 bp | GGAAAGTTGGAATGCTACCCTTGCAGGTGTGCTGGGTGCCTTAAACCAAGATTCTGGCCGAGCTCGAGGTaGAAGCGCACAGCGGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: GKLECYPCRCAGCLKPRFWPSSR*KRTAAP Trigger: CGGCGCCGCTGTGCGCTTGCACCTCGAGCTCGGCCA...GAATCTTGGTTTAAGGCACCCAGCACACCTGCAAGGGTAGCATTCCAACTTTCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR GCA 90 bp | GGAAAGTTGGAATGCTACCCTTGCAGGTGTGCTGGGTGCCTTAAACCAAGATTCCACCTGCCGATAGCGTaGCAAGAAGTCCCCAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GKLECYPCRCAGCLKPRFHLPIA*QEVPSL Trigger: GAGGCTGGGGACTTCTTGGCACGCTATCGGCAGGTG...GAATCTTGGTTTAAGGCACCCAGCACACCTGCAAGGGTAGCATTCCAACTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR TCA 90 bp | TGGTTTGGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAAAGTCGGGCCGCCTCTGTaGGGGCCAGCGCTTCCCCGG | + |
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Preference number: 4 (lower is better) Translates to: WFGNRGPILKTLTHLLPKVGPPL*GPALPR Trigger: CCGGGGAAGCGCTGGCCCTCACAGAGGCGGCCCGAC...TTTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR CCA 90 bp | TTCTGGATAACAGAAATTTGCTGCAACCCAATAAAGGCAGGATCACCAAAAGATGGGTCCCGACAGGGGTaGCTGGGGCCCAGAAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: FWITEICCNPIKAGSPKDGSRQG*LGPRRR Trigger: CCGCCTTCTGGGCCCCAGCCACCCCTGTCGGGACCC...ATCTTTTGGTGATCCTGCCTTTATTGGGTTGCAGCAAATTTCTGTTATCCAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR CCA 90 bp | AACATGTCAGTTCTGCTTATTAACATAGTCCTCATGTTCAGATACACAGAGTATCCCGACAGGGGTGGCTaGGGCCCAGAAGGCGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: NMSVLLINIVLMFRYTEYPDRGG*GPEGGC Trigger: GCAGCCGCCTTCTGGGCCCCAGCCACCCCTGTCGGG...ATACTCTGTGTATCTGAACATGAGGACTATGTTAATAAGCAGAACTGACATGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR TCA 90 bp | ATGTCAGTTCTGCTTATTAACATAGTCCTCATGTTCAGATACACAGAGTATTTGGAAGTCCCCAGCCTCTaGGCCTGGCCAGGCACCGCC | + |
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Preference number: 4 (lower is better) Translates to: MSVLLINIVLMFRYTEYLEVPSL*AWPGTA Trigger: GGCGGTGCCTGGCCAGGCTCAGAGGCTGGGGACTTC...CAAATACTCTGTGTATCTGAACATGAGGACTATGTTAATAAGCAGAACTGACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR TCA 90 bp | TTCTGGATAACAGAAATTTGCTGCAACCCAATAAAGGCAGGATCACCAAAAGATACCGAGTGTGCCAGGTaGAGGCGCAACAGAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: FWITEICCNPIKAGSPKDTECAR*RRNRAW Trigger: CCAGGCTCTGTTGCGCCTTCACCTGGCACACTCGGT...ATCTTTTGGTGATCCTGCCTTTATTGGGTTGCAGCAAATTTCTGTTATCCAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR TCA 90 bp | GGAAAGTTGGAATGCTACCCTTGCAGGTGTGCTGGGTGCCTTAAACCAAGATTCTTTCTTGGGCAGCCATaGCCAGAGACTGCAATAACA | + |
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Preference number: 4 (lower is better) Translates to: GKLECYPCRCAGCLKPRFFLGQP*PETAIT Trigger: TGTTATTGCAGTCTCTGGTCATGGCTGCCCAAGAAA...GAATCTTGGTTTAAGGCACCCAGCACACCTGCAAGGGTAGCATTCCAACTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR GCA 90 bp | AACATGTCAGTTCTGCTTATTAACATAGTCCTCATGTTCAGATACACAGAGTATGGCCCAGAAGGCGGCTaGGGCAGCAGCTCGAGTTGC | + |
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Preference number: 4 (lower is better) Translates to: NMSVLLINIVLMFRYTEYGPEGG*GSSSSC Trigger: GCAACTCGAGCTGCTGCCGCAGCCGCCTTCTGGGCC...ATACTCTGTGTATCTGAACATGAGGACTATGTTAATAAGCAGAACTGACATGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR CCA 90 bp | CTGGTTTGGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAATTGCAGTGCGGCCAGTaGCATCAGGGGCAGGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LVWKQRTNSKNFDSSLAKLQCGQ*HQGQVQ Trigger: CTGCACCTGCCCCTGATGCCACTGGCCGCACTGCAA...TTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR CCA 90 bp | TCACTTAATACTCAGTCAGAAACATTTCTTTGCTATTTGCCCCAGCAACACTGGCAGGAAGCTGGCCGCTaGTATCCTGGCCATGGCCAT | + |
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Preference number: 4 (lower is better) Translates to: SLNTQSETFLCYLPQQHWQEAGR*YPGHGH Trigger: ATGGCCATGGCCAGGATACCAGCGGCCAGCTTCCTG...CCAGTGTTGCTGGGGCAAATAGCAAAGAAATGTTTCTGACTGAGTATTAAGTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR GCA 90 bp | CTGCAACCCAATAAAGGCAGGATCACCAAAAGATCACAGATGCTACTCAGGAGAGCCATGACCAGAGACTaGAATAACAGAAACAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: LQPNKGRITKRSQMLLRRAMTRD*NNRNSS Trigger: GGAGCTGTTTCTGTTATTGCAGTCTCTGGTCATGGC...TCTCCTGAGTAGCATCTGTGATCTTTTGGTGATCCTGCCTTTATTGGGTTGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CAA 72 bp | ACCAAAAGATCACAGATGCTACTCAGGAGAAAGGTTTaGGTCATTCCATCAGGAAGAACCTGGGCTAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: TKRSQMLLRRKV*VIPSGRTWASR Trigger: TCTGCTAGCCCAGGTTCTTCCTGATGGAATGACCAAAACCTTTCTCCTGAGTAGCATCTGTGATCTTTTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR TCA 90 bp | CTGGTTTGGAAACAGAGGACCAATTCTAAAAACTTTGACTCATCTCTTGCCAAATCAAGAAGCGCTTCTTaGGCTTGTTGGACACCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LVWKQRTNSKNFDSSLAKSRSAS*ACWTPA Trigger: GGCAGGTGTCCAACAAGCTCAAGAAGCGCTTCTTGA...TTTGGCAAGAGATGAGTCAAAGTTTTTAGAATTGGTCCTCTGTTTCCAAACCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS-3UTR CCA 90 bp | AACATGTCAGTTCTGCTTATTAACATAGTCCTCATGTTCAGATACACAGAGTATCTGGTATCCTGGCCATaGCCATCGAAAGCCTCCCAG | + |
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Preference number: 4 (lower is better) Translates to: NMSVLLINIVLMFRYTEYLVSWP*PSKASQ Trigger: CTGGGAGGCTTTCGATGGCCATGGCCAGGATACCAG...ATACTCTGTGTATCTGAACATGAGGACTATGTTAATAAGCAGAACTGACATGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CAA 72 bp | CTCATCTCTTGCCAAAAACTTCTGGATAACAGAAATTaGCTGCAACCCAATAAAGGCAGGATCACCAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: LISCQKLLDNRN*LQPNKGRITKR Trigger: TCTTTTGGTGATCCTGCCTTTATTGGGTTGCAGCAAATTTCTGTTATCCAGAAGTTTTTGGCAAGAGATGAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| 3UTR CAA 72 bp | TTGATCCAGGAACTACAGAGAAAAGTAGAACTGGCTTaGTATCACTTAATACTCAGTCAGAAACATTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LIQELQRKVELA*YHLILSQKHFF Trigger: AAAGAAATGTTTCTGACTGAGTATTAAGTGATACAAAGCCAGTTCTACTTTTCTCTGTAGTTCCTGGATCAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS CCA 90 bp | GGCCCAGAAGGCGGCTGCGGCAGCAGCTCGAGTTGCTGTACCGGGTaGCCCCCATGCTCCCGTGCCAGGCGTTGCATGCGTGTAAATAGC | + |
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Preference number: 5 (lower is better) Translates to: GPEGGCGSSSSCCTG*PPCSRARRCMRVNS Trigger: GCTATTTACACGCATGCAACGCCTGGCACGGGAGCATGGGGGCCACCCGGTACAGCAACTCGAGCTGCTGCCGCAGCCGCCTTCTGGGCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS TCA 72 bp | CACCTGCCGATAGCGTGCCAAGAAGTCCCCAGCCTCTaGGCCTGGCCAGGCACCGCCGCCCAAGGAGGACGC | + |
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Preference number: 6 (lower is better) Translates to: HLPIACQEVPSL*AWPGTAAQGGR Trigger: GCGTCCTCCTTGGGCGGCGGTGCCTGGCCAGGCTCAGAGGCTGGGGACTTCTTGGCACGCTATCGGCAGGTG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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| CDS CCA 72 bp | GGAGGCAGCATCACCAAGCGCTTGCAGTGCGGCCAGTaGCATCAGGGGCAGGTGCAGCTGGGCAGCCCGCTG | + |
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Preference number: 6 (lower is better) Translates to: GGSITKRLQCGQ*HQGQVQLGSPL Trigger: CAGCGGGCTGCCCAGCTGCACCTGCCCCTGATGCCACTGGCCGCACTGCAAGCGCTTGGTGATGCTGCCTCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105111.4 |
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