RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for F2RL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021675

Ensembl transcript IDs: ENSMUST00000022182.5

Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGTTTCAGTGGGGCGACAGGGATGGGAGGGAAGACAGTCGGTGTaGAGGTGTGTGGAATCGCAGGCACAGCTCCACCAGGAAAGCCAT +
Preference number: 1 (lower is better)
Translates to: GVSVGRQGWEGRQSV*RCVESQAQLHQESH
Trigger: ATGGCTTTCCTGGTGGAGCTGTGCCTGCGATTCCACACACCTTCACACCGACTGTCTTCCCTCCCATCCCTGTCGCCCCACTGAAACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 90 bp TGGGGCGACAGGGATGGGAGGGAAGACAGTCGGTGTGAAGGTGTGTaGAATCGCAGGCACAGCTCCACCAGGAAAGCCATGCAAGGGCTT +
Preference number: 1 (lower is better)
Translates to: WGDRDGREDSRCEGV*NRRHSSTRKAMQGL
Trigger: AAGCCCTTGCATGGCTTTCCTGGTGGAGCTGTGCCTGCGATTCCACACACCTTCACACCGACTGTCTTCCCTCCCATCCCTGTCGCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 90 bp GGCTCAGCTGGCAGTGAGGGCTGCCATCTTTGGACAGAGGTGGCATaGACATGGGACCCCAGTGAGAGACACAACAAAGACAGGATACCT +
Preference number: 1 (lower is better)
Translates to: GSAGSEGCHLWTEVA*TWDPSERHNKDRIP
Trigger: AGGTATCCTGTCTTTGTTGTGTCTCTCACTGGGGTCCCATGTTCATGCCACCTCTGTCCAAAGATGGCAGCCCTCACTGCCAGCTGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 90 bp CAGGGAAGGTTAACCCAATCTGTGGAAATGAGGCTCAGCTGGCAGTaGGGGCTGCCATCTTTGGACAGAGGTGGCATGAACATGGGACCC +
Preference number: 1 (lower is better)
Translates to: QGRLTQSVEMRLSWQ*GLPSLDRGGMNMGP
Trigger: GGGTCCCATGTTCATGCCACCTCTGTCCAAAGATGGCAGCCCTCACTGCCAGCTGAGCCTCATTTCCACAGATTGGGTTAACCTTCCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR GCA 90 bp GTGAAGGTGTGTGGAATCGCAGGCACAGCTCCACCAGGAAAGCCATaGAAGGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGT +
Preference number: 1 (lower is better)
Translates to: VKVCGIAGTAPPGKP*KGLSFQEHCRVKGS
Trigger: ACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCCTTGCATGGCTTTCCTGGTGGAGCTGTGCCTGCGATTCCACACACCTTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 90 bp AATGAGGCTCAGCTGGCAGTGAGGGCTGCCATCTTTGGACAGAGGTaGCATGAACATGGGACCCCAGTGAGAGACACAACAAAGACAGGA +
Preference number: 1 (lower is better)
Translates to: NEAQLAVRAAIFGQR*HEHGTPVRDTTKTG
Trigger: TCCTGTCTTTGTTGTGTCTCTCACTGGGGTCCCATGTTCATGCCACCTCTGTCCAAAGATGGCAGCCCTCACTGCCAGCTGAGCCTCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 90 bp AGTCTGCCGACACCGCTCACAGGAGGGAAGGGGACATGTATAGCTTaGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTGCCATCGGA +
Preference number: 1 (lower is better)
Translates to: SLPTPLTGGKGTCIA*RIRKASRNASIAIG
Trigger: TCCGATGGCAATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTTCCCTCCTGTGAGCGGTGTCGGCAGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 90 bp CTCATGACTTCACATTGGAAGTATAAAGCACTGTTGCAGAGGAGCTaGAAAATGGAGCGCTTGCCAGACCTGGTTGAACCCAGCACTTGG +
Preference number: 1 (lower is better)
Translates to: LMTSHWKYKALLQRS*KMERLPDLVEPSTW
Trigger: CCAAGTGCTGGGTTCAACCAGGTCTGGCAAGCGCTCCATTTTTCAGCTCCTCTGCAACAGTGCTTTATACTTCCAATGTGAAGTCATGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 90 bp GGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATaGTGTATTCAGAAAGCTGTTCAGGGAAGGTTAACCCAATCTGTG +
Preference number: 1 (lower is better)
Translates to: GLSFQEHCRVKGSIA*CIQKAVQGRLTQSV
Trigger: CACAGATTGGGTTAACCTTCCCTGAACAGCTTTCTGAATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR GCA 90 bp CAAGGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTaGATGATGTATTCAGAAAGCTGTTCAGGGAAGGTTAACCCAATC +
Preference number: 1 (lower is better)
Translates to: QGLVISGALQGQGKY*MMYSESCSGKVNPI
Trigger: GATTGGGTTAACCTTCCCTGAACAGCTTTCTGAATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 90 bp TCAGCTCATACAAGGTTTTTCAAGTGTTTTGGGTCTGTGGTTGGTTaGATCTGCAGGTATGAAACTTGCAGGGACAGAGAGCTGACCACA +
Preference number: 1 (lower is better)
Translates to: SAHTRFFKCFGSVVG*ICRYETCRDRELTT
Trigger: TGTGGTCAGCTCTCTGTCCCTGCAAGTTTCATACCTGCAGATTCAACCAACCACAGACCCAAAACACTTGAAAAACCTTGTATGAGCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR TCA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTCTGTTGCAGAGGAGCTaGAAAATGGAGCGCTTGCCA +
Preference number: 2 (lower is better)
Translates to: EEEGEPRVVTTSQSADTALLQRS*KMERLP
Trigger: TGGCAAGCGCTCCATTTTTCAGCTCCTCTGCAACAG...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR GCA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTGAGCTGATGGTGCCATaGACAAGTCAGCCAAGCATG +
Preference number: 2 (lower is better)
Translates to: EEEGEPRVVTTSQSADTAELMVP*TSQPSM
Trigger: CATGCTTGGCTGACTTGTGCATGGCACCATCAGCTC...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR TCA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATGACAGGATACCTGCTTaGGGAGGAGGGAGAACCACG +
Preference number: 2 (lower is better)
Translates to: GLVISGALQGQGKYCMMYDRIPA*GGGRTT
Trigger: CGTGGTTCTCCCTCCTCCTCAAGCAGGTATCCTGTC...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR TCA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATGCCAGGACTACACAGTaGGGCTCTGTCTCAAAAACA +
Preference number: 2 (lower is better)
Translates to: GLVISGALQGQGKYCMMYARTTQ*GSVSKT
Trigger: TGTTTTTGAGACAGAGCCTCACTGTGTAGTCCTGGC...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR GCA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATCAAAGACAGGATACCTaGTTGAGGAGGAGGGAGAAC +
Preference number: 2 (lower is better)
Translates to: GLVISGALQGQGKYCMMYQRQDT*LRRREN
Trigger: GTTCTCCCTCCTCCTCAAGCAGGTATCCTGTCTTTG...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR CCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTCCAGATATCTCTCCTTaGTCTCTAAGGTGGTCTTGC +
Preference number: 2 (lower is better)
Translates to: KGTCIAWRIRKASRNASIPDISP*SLRWSC
Trigger: GCAAGACCACCTTAGAGACCAAGGAGAGATATCTGG...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR GCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTAGTATAAAGCACTGTTaGAGAGGAGCTGAAAAATGG +
Preference number: 2 (lower is better)
Translates to: KGTCIAWRIRKASRNASISIKHC*RGAEKW
Trigger: CCATTTTTCAGCTCCTCTGCAACAGTGCTTTATACT...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR CCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTCTCATGACTTCACATTaGAAGTATAAAGCACTGTTG +
Preference number: 2 (lower is better)
Translates to: KGTCIAWRIRKASRNASILMTSH*KYKALL
Trigger: CAACAGTGCTTTATACTTCCAATGTGAAGTCATGAG...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CAA 90 bp AGAAAGTGCTTTAGAAATCCAGATAAAGAAAATGATGCTTCTAGTTaGAGAATAAGGGAAGAACGGGCCTTTAACGACTTGAAAAGCTGG +
Preference number: 2 (lower is better)
Translates to: RKCFRNPDKENDASS*RIREERAFNDLKSW
Trigger: CCAGCTTTTCAAGTCGTTAAAGGCCCGTTCTTCCCTTATTCTCAAACTAGAAGCATCATTTTCTTTATCTGGATTTCTAAAGCACTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR GCA 72 bp GGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTaGCGACACCGCTCACAGGAGGGAAGGGGACATGTA +
Preference number: 3 (lower is better)
Translates to: GGRTTGSDNLPV*RHRSQEGRGHV
Trigger: TACATGTCCCCTTCCCTCCTGTGAGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR CAA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTGGGGACATGTATAGCTaGGAGAATCAGGAAGGCAAG +
Preference number: 3 (lower is better)
Translates to: EEEGEPRVVTTSQSADTAGDMYS*ENQEGK
Trigger: CTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCC...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 72 bp AGGGATGGGAGGGAAGACAGTCGGTGTGAAGGTGTGTaGAATCGCAGGCACAGCTCCACCAGGAAAGCCATG +
Preference number: 3 (lower is better)
Translates to: RDGREDSRCEGV*NRRHSSTRKAM
Trigger: CATGGCTTTCCTGGTGGAGCTGTGCCTGCGATTCCACACACCTTCACACCGACTGTCTTCCCTCCCATCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR GCA 72 bp TGTGGAATCGCAGGCACAGCTCCACCAGGAAAGCCATaGAAGGGCTTGTCATTTCAGGAGCACTGCAGGGTC +
Preference number: 3 (lower is better)
Translates to: CGIAGTAPPGKP*KGLSFQEHCRV
Trigger: GACCCTGCAGTGCTCCTGAAATGACAAGCCCTTGCATGGCTTTCCTGGTGGAGCTGTGCCTGCGATTCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 72 bp CAGCTGGCAGTGAGGGCTGCCATCTTTGGACAGAGGTaGCATGAACATGGGACCCCAGTGAGAGACACAACA +
Preference number: 3 (lower is better)
Translates to: QLAVRAAIFGQR*HEHGTPVRDTT
Trigger: TGTTGTGTCTCTCACTGGGGTCCCATGTTCATGCCACCTCTGTCCAAAGATGGCAGCCCTCACTGCCAGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 72 bp GGCAGTGAGGGCTGCCATCTTTGGACAGAGGTGGCATaGACATGGGACCCCAGTGAGAGACACAACAAAGAC +
Preference number: 3 (lower is better)
Translates to: GSEGCHLWTEVA*TWDPSERHNKD
Trigger: GTCTTTGTTGTGTCTCTCACTGGGGTCCCATGTTCATGCCACCTCTGTCCAAAGATGGCAGCCCTCACTGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 72 bp CCCAGTGAGAGACACAACAAAGACAGGATACCTGCTTaGGGAGGAGGGAGAACCACGGGTAGTGACAACCTC +
Preference number: 3 (lower is better)
Translates to: PSERHNKDRIPA*GGGRTTGSDNL
Trigger: GAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTCAAGCAGGTATCCTGTCTTTGTTGTGTCTCTCACTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR CAA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATAGACAGGATACCTGCTaGAGGAGGAGGGAGAACCAC +
Preference number: 3 (lower is better)
Translates to: GLVISGALQGQGKYCMMYRQDTC*RRRENH
Trigger: GTGGTTCTCCCTCCTCCTCAAGCAGGTATCCTGTCT...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR-3UTR CAA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATCCCAGATATCTCTCCTaGGTCTCTAAGGTGGTCTTG +
Preference number: 3 (lower is better)
Translates to: GLVISGALQGQGKYCMMYPRYLS*VSKVVL
Trigger: CAAGACCACCTTAGAGACCAAGGAGAGATATCTGGG...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 72 bp TCACATTGGAAGTATAAAGCACTGTTGCAGAGGAGCTaGAAAATGGAGCGCTTGCCAGACCTGGTTGAACCC +
Preference number: 3 (lower is better)
Translates to: SHWKYKALLQRS*KMERLPDLVEP
Trigger: GGGTTCAACCAGGTCTGGCAAGCGCTCCATTTTTCAGCTCCTCTGCAACAGTGCTTTATACTTCCAATGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CCA 72 bp ACACCGCTCACAGGAGGGAAGGGGACATGTATAGCTTaGAGAATCAGGAAGGCAAGTAGAAATGCATCCATT +
Preference number: 3 (lower is better)
Translates to: TPLTGGKGTCIA*RIRKASRNASI
Trigger: AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTTCCCTCCTGTGAGCGGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR TCA 72 bp TTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATaGTGTATTCAGAAAGCTGTTCAGGGAAGGTTAACC +
Preference number: 3 (lower is better)
Translates to: FQEHCRVKGSIA*CIQKAVQGRLT
Trigger: GGTTAACCTTCCCTGAACAGCTTTCTGAATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTACACCATGCCACACATaGGCATGGAGAAGCTGCGTT +
Preference number: 4 (lower is better)
Translates to: EEEGEPRVVTTSQSADTATPCHT*AWRSCV
Trigger: AACGCAGCTTCTCCATGCTCATGTGTGGCATGGTGT...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTATGGCCAGGTTGGTGTaGAAGATGACCAGACTGATG +
Preference number: 4 (lower is better)
Translates to: EEEGEPRVVTTSQSADTAMARLV*KMTRLM
Trigger: CATCAGTCTGGTCATCTTTCACACCAACCTGGCCAT...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CAA 72 bp GCAGGCACAGCTCCACCAGGAAAGCCATGCAAGGGCTaGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGT +
Preference number: 4 (lower is better)
Translates to: AGTAPPGKPCKG*SFQEHCRVKGS
Trigger: ACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCCTTGCATGGCTTTCCTGGTGGAGCTGTGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CAA 72 bp AGAGGAGCTGAAAAATGGAGCGCTTGCCAGACCTGGTaGAACCCAGCACTTGGGAGGCAGAAGCAGGCAGAT +
Preference number: 4 (lower is better)
Translates to: RGAEKWSACQTW*NPALGRQKQAD
Trigger: ATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGTTCAACCAGGTCTGGCAAGCGCTCCATTTTTCAGCTCCTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATGCAGCTTCTGGTATGTaGAAGGGTGAGCCGTGGCCA +
Preference number: 4 (lower is better)
Translates to: GLVISGALQGQGKYCMMYAASGM*KGEPWP
Trigger: TGGCCACGGCTCACCCTTTCACATACCAGAAGCTGC...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp ATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTGCCATCGGAATACATCGTGGCAGGTGGTaGTCTCGGAGTGGACGAGGT +
Preference number: 4 (lower is better)
Translates to: IAWRIRKASRNASIAIGIHRGRW*SRSGRG
Trigger: ACCTCGTCCACTCCGAGATCACCACCTGCCACGATG...TATTCCGATGGCAATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR GCA 90 bp AGTCTGCCGACACCGCTCACAGGAGGGAAGGGGACATGTATAGCTTGGAGAATCAAACAGCAGCCCAGCTaGAACCAAGATAAGGATTTT +
Preference number: 4 (lower is better)
Translates to: SLPTPLTGGKGTCIAWRIKQQPS*NQDKDF
Trigger: AAAATCCTTATCTTGGTTGCAGCTGGGCTGCTGTTT...GATTCTCCAAGCTATACATGTCCCCTTCCCTCCTGTGAGCGGTGTCGGCAGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp ATAGAGAACCAGCCAGGCCAGCCAGGACTACACAGTGAGGCTCTGTCTCAAAAATGTATAAGAAAACCATaGCCCACACCATGCCACACA +
Preference number: 4 (lower is better)
Translates to: IENQPGQPGLHSEALSQKCIRKP*PTPCHT
Trigger: TGTGTGGCATGGTGTGGGTCATGGTTTTCTTATACA...TTTTTGAGACAGAGCCTCACTGTGTAGTCCTGGCTGGCCTGGCTGGTTCTCTAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTCACTTTGGCAAACAGTaGCTGGCAGAAACAGCAGCC +
Preference number: 4 (lower is better)
Translates to: KGTCIAWRIRKASRNASIHFGKQ*LAETAA
Trigger: GGCTGCTGTTTCTGCCAGTCACTGTTTGCCAAAGTG...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CCA 90 bp ATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTGCCATCGGAATATTGGCAAACAGTGACTaGCAGAAACAGCAGCCCAGC +
Preference number: 4 (lower is better)
Translates to: IAWRIRKASRNASIAIGILANSD*QKQQPS
Trigger: GCTGGGCTGCTGTTTCTGCCAGTCACTGTTTGCCAA...TATTCCGATGGCAATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CCA 90 bp AGTCTGCCGACACCGCTCACAGGAGGGAAGGGGACATGTATAGCTTGGAGAATCCTCTATGTCAGAAAGTaGGAATTCTTCAAAGGTATT +
Preference number: 4 (lower is better)
Translates to: SLPTPLTGGKGTCIAWRILYVRK*EFFKGI
Trigger: AATACCTTTGAAGAATTCCCACTTTCTGACATAGAG...GATTCTCCAAGCTATACATGTCCCCTTCCCTCCTGTGAGCGGTGTCGGCAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CAA 72 bp TGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATaGCATGATGTATTCAGAAAGCTGTTCAGGGAAGGT +
Preference number: 4 (lower is better)
Translates to: CHFRSTAGSREV*HDVFRKLFREG
Trigger: ACCTTCCCTGAACAGCTTTCTGAATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTACTCCTGCTTCAGGATaGCAAAGGGCAGCATGTATA +
Preference number: 4 (lower is better)
Translates to: KGTCIAWRIRKASRNASITPASG*QRAACI
Trigger: TATACATGCTGCCCTTTGTCATCCTGAAGCAGGAGT...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTAAAGGAGATCTGCGATaGCCAGGTTGGTGTGAAAGA +
Preference number: 4 (lower is better)
Translates to: KGTCIAWRIRKASRNASIKGDLR*PGWCER
Trigger: TCTTTCACACCAACCTGGCCATCGCAGATCTCCTTT...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR TCA 90 bp GGGCTTGTCATTTCAGGAGCACTGCAGGGTCAAGGGAAGTATTGCATGATGTATCTACAACTTTCGACATaGCAAAGTAAAGGAATGGAT +
Preference number: 4 (lower is better)
Translates to: GLVISGALQGQGKYCMMYLQLST*QSKGMD
Trigger: ATCCATTCCTTTACTTTGTCATGTCGAAAGTTGTAG...ATACATCATGCAATACTTCCCTTGACCCTGCAGTGCTCCTGAAATGACAAGCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CCA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTATGGCAGGTATCACTTaGGTACTTAAGGAACTTCTC +
Preference number: 4 (lower is better)
Translates to: KGTCIAWRIRKASRNASIMAGIT*VLKELL
Trigger: GAGAAGTTCCTTAAGTACCCAAGTGATACCTGCCAT...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CCA 90 bp ATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTGCCATCGGAATATGTGGTAGTAGTAGTTaGCATGGTGGATTACGAGTA +
Preference number: 4 (lower is better)
Translates to: IAWRIRKASRNASIAIGICGSSS*HGGLRV
Trigger: TACTCGTAATCCACCATGCCAACTACTACTACCACA...TATTCCGATGGCAATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
3UTR CAA 72 bp AGAAATGCATCCATTGCCATCGGAATACTGCTAATGTaGCTTACAATTAAGACACTCTCTAAATACAAAGTA +
Preference number: 4 (lower is better)
Translates to: RNASIAIGILLM*LTIKTLSKYKV
Trigger: TACTTTGTATTTAGAGAGTGTCTTAATTGTAAGCAACATTAGCAGTATTCCGATGGCAATGGATGCATTTCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 90 bp GACTCGCACGCGTCAACGACATCGTGGCAGGTGGTGATCTCGGAGTaGACGAGGTGGTACTCCTGCTTCAGGATGACAAAGGGCAGCATG +
Preference number: 5 (lower is better)
Translates to: DSHASTTSWQVVISE*TRWYSCFRMTKGSM
Trigger: CATGCTGCCCTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGTCGTTGACGCGTGCGAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CAA 90 bp GAGGAGGAGGGAGAACCACGGGTAGTGACAACCTCCCAGTCTGCCGACACCGCTGTTGGCTTTGCTGAGTaGTCTGAAACATTTATGCCA +
Preference number: 5 (lower is better)
Translates to: EEEGEPRVVTTSQSADTAVGFAE*SETFMP
Trigger: TGGCATAAATGTTTCAGACAACTCAGCAAAGCCAAC...AGCGGTGTCGGCAGACTGGGAGGTTGTCACTACCCGTGGTTCTCCCTCCTCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 90 bp GCGTCAACGACATCGTGGCAGGTGGTGATCTCGGAGTGGACGAGGTaGTACTCCTGCTTCAGGATGACAAAGGGCAGCATGTATAAGAAA +
Preference number: 5 (lower is better)
Translates to: ASTTSWQVVISEWTR*YSCFRMTKGSMYKK
Trigger: TTTCTTATACATGCTGCCCTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGTCGTTGACGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS GCA 90 bp ACATCGTGGCAGGTGGTGATCTCGGAGTGGACGAGGTGGTACTCCTaGTTCAGGATGACAAAGGGCAGCATGTATAAGAAAACCATGACC +
Preference number: 5 (lower is better)
Translates to: TSWQVVISEWTRWYS*FRMTKGSMYKKTMT
Trigger: GGTCATGGTTTTCTTATACATGCTGCCCTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CAA 90 bp ATAGAGAACCAGCCAGGCCAGCCAGGACTACACAGTGAGGCTCTGTCTCAAAAATATTCACGTGGAGAGTaGAAATACTGTCCTCGGGAC +
Preference number: 5 (lower is better)
Translates to: IENQPGQPGLHSEALSQKYSRGE*KYCPRD
Trigger: GTCCCGAGGACAGTATTTCAACTCTCCACGTGAATA...TTTTTGAGACAGAGCCTCACTGTGTAGTCCTGGCTGGCCTGGCTGGTTCTCTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS TCA 90 bp GGCAGTGTGACACAGAAAAGGAGATCTGCGATGGCCAGGTTGGTGTaGAAGATGACCAGACTGATGGATTTGGTCCTTAAGGAGAGTTTC +
Preference number: 5 (lower is better)
Translates to: GSVTQKRRSAMARLV*KMTRLMDLVLKESF
Trigger: GAAACTCTCCTTAAGGACCAAATCCATCAGTCTGGTCATCTTTCACACCAACCTGGCCATCGCAGATCTCCTTTTCTGTGTCACACTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CAA 90 bp ATAGAGAACCAGCCAGGCCAGCCAGGACTACACAGTGAGGCTCTGTCTCAAAAAAACATTTATGCCACTTaGGCAAACAGTGACTGGCAG +
Preference number: 5 (lower is better)
Translates to: IENQPGQPGLHSEALSQKNIYAT*ANSDWQ
Trigger: CTGCCAGTCACTGTTTGCCAAAGTGGCATAAATGTT...TTTTTGAGACAGAGCCTCACTGTGTAGTCCTGGCTGGCCTGGCTGGTTCTCTAT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS TCA 90 bp GGAACTTCTCAGGTATCCTATGGTAGCATTATTCACGTGGAGAGTTaGAATACTGTCCTCGGGACACTCCGCTTTTATAGTTGTGGTGGC +
Preference number: 5 (lower is better)
Translates to: GTSQVSYGSIIHVES*NTVLGTLRFYSCGG
Trigger: GCCACCACAACTATAAAAGCGGAGTGTCCCGAGGACAGTATTTCAACTCTCCACGTGAATAATGCTACCATAGGATACCTGAGAAGTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 90 bp TCACGATGTTGGCTGGTACACCAACCACAAACAGCAGGATGTAGATaGCAGGTATCACTTGGGTACTTAAGGAACTTCTCAGGTATCCTA +
Preference number: 5 (lower is better)
Translates to: SRCWLVHQPQTAGCR*QVSLGYLRNFSGIL
Trigger: TAGGATACCTGAGAAGTTCCTTAAGTACCCAAGTGATACCTGCCATCTACATCCTGCTGTTTGTGGTTGGTGTACCAGCCAACATCGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS-3UTR CAA 90 bp AAGGGGACATGTATAGCTTGGAGAATCAGGAAGGCAAGTAGAAATGCATCCATTACCAGACTGATGGATTaGGTCCTTAAGGAGAGTTTC +
Preference number: 5 (lower is better)
Translates to: KGTCIAWRIRKASRNASITRLMD*VLKESF
Trigger: GAAACTCTCCTTAAGGACCAAATCCATCAGTCTGGT...AATGGATGCATTTCTACTTGCCTTCCTGATTCTCCAAGCTATACATGTCCCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 90 bp GTACTTAAGGAACTTCTCAGGTATCCTATGGTAGCATTATTCACGTaGAGAGTTGAAATACTGTCCTCGGGACACTCCGCTTTTATAGTT +
Preference number: 5 (lower is better)
Translates to: VLKELLRYPMVALFT*RVEILSSGHSAFIV
Trigger: AACTATAAAAGCGGAGTGTCCCGAGGACAGTATTTCAACTCTCCACGTGAATAATGCTACCATAGGATACCTGAGAAGTTCCTTAAGTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS TCA 72 bp GGGACTCGCACGCGTCAACGACATCGTGGCAGGTGGTaGTCTCGGAGTGGACGAGGTGGTACTCCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: GTRTRQRHRGRW*SRSGRGGTPAS
Trigger: TGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGTCGTTGACGCGTGCGAGTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp AAGGATGATGGGGACTCGCACGCGTCAACGACATCGTaGCAGGTGGTGATCTCGGAGTGGACGAGGTGGTAC +
Preference number: 6 (lower is better)
Translates to: KDDGDSHASTTS*QVVISEWTRWY
Trigger: GTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGTCGTTGACGCGTGCGAGTCCCCATCATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp ACATCGTGGCAGGTGGTGATCTCGGAGTGGACGAGGTaGTACTCCTGCTTCAGGATGACAAAGGGCAGCATG +
Preference number: 6 (lower is better)
Translates to: TSWQVVISEWTR*YSCFRMTKGSM
Trigger: CATGCTGCCCTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp GCGTCAACGACATCGTGGCAGGTGGTGATCTCGGAGTaGACGAGGTGGTACTCCTGCTTCAGGATGACAAAG +
Preference number: 6 (lower is better)
Translates to: ASTTSWQVVISE*TRWYSCFRMTK
Trigger: CTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTGCCACGATGTCGTTGACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS GCA 72 bp CAGGTGGTGATCTCGGAGTGGACGAGGTGGTACTCCTaGTTCAGGATGACAAAGGGCAGCATGTATAAGAAA +
Preference number: 6 (lower is better)
Translates to: QVVISEWTRWYS*FRMTKGSMYKK
Trigger: TTTCTTATACATGCTGCCCTTTGTCATCCTGAAGCAGGAGTACCACCTCGTCCACTCCGAGATCACCACCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp TGGTCCTTAAGGAGAGTTTCCACAGGGTCACGATGTTaGCTGGTACACCAACCACAAACAGCAGGATGTAGA +
Preference number: 6 (lower is better)
Translates to: WSLRRVSTGSRC*LVHQPQTAGCR
Trigger: TCTACATCCTGCTGTTTGTGGTTGGTGTACCAGCCAACATCGTGACCCTGTGGAAACTCTCCTTAAGGACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp CCAGTTGTTGCCATTGAGATGGTAGGCGATCTTAAATaGCAGTGTGACACAGAAAAGGAGATCTGCGATGGC +
Preference number: 6 (lower is better)
Translates to: PVVAIEMVGDLK*QCDTEKEICDG
Trigger: GCCATCGCAGATCTCCTTTTCTGTGTCACACTGCCATTTAAGATCGCCTACCATCTCAATGGCAACAACTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp GAACTTCTCAGGTATCCTATGGTAGCATTATTCACGTaGAGAGTTGAAATACTGTCCTCGGGACACTCCGCT +
Preference number: 6 (lower is better)
Translates to: ELLRYPMVALFT*RVEILSSGHSA
Trigger: AGCGGAGTGTCCCGAGGACAGTATTTCAACTCTCCACGTGAATAATGCTACCATAGGATACCTGAGAAGTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CCA 72 bp TGGCTGGTACACCAACCACAAACAGCAGGATGTAGATaGCAGGTATCACTTGGGTACTTAAGGAACTTCTCA +
Preference number: 6 (lower is better)
Translates to: WLVHQPQTAGCR*QVSLGYLRNFS
Trigger: TGAGAAGTTCCTTAAGTACCCAAGTGATACCTGCCATCTACATCCTGCTGTTTGTGGTTGGTGTACCAGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CAA 90 bp GGACCCCCATTAAAACTCTTAATAGTTAAGGTTGGCTTTGCTGAGTaGTCTGAAACATTTATGCCACTTTGGCAAACAGTGACTGGCAGA +
Preference number: 6 (lower is better)
Translates to: GPPLKLLIVKVGFAE*SETFMPLWQTVTGR
Trigger: TCTGCCAGTCACTGTTTGCCAAAGTGGCATAAATGTTTCAGACAACTCAGCAAAGCCAACCTTAACTATTAAGAGTTTTAATGGGGGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5
CDS CAA 72 bp TTAAAACTCTTAATAGTTAAGGTTGGCTTTGCTGAGTaGTCTGAAACATTTATGCCACTTTGGCAAACAGTG +
Preference number: 6 (lower is better)
Translates to: LKLLIVKVGFAE*SETFMPLWQTV
Trigger: CACTGTTTGCCAAAGTGGCATAAATGTTTCAGACAACTCAGCAAAGCCAACCTTAACTATTAAGAGTTTTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022182.5