RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for F2RL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021678

Ensembl transcript IDs: ENSMUST00000022185.10

Found 77 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAAAGGAGGAGGCTTCTGGCAATCCTGGGGAGAGCTGCATGCTTGTaGTTGGTGCAGAGACAGGCAGCTTGGATAGGAAATGACAGCCCC +
Preference number: 1 (lower is better)
Translates to: QRRRLLAILGRAACL*LVQRQAAWIGNDSP
Trigger: GGGGCTGTCATTTCCTATCCAAGCTGCCTGTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 90 bp TGCATGCTTGTGATTGGTGCAGAGACAGGCAGCTTGGATAGGAAATaGCAGCCCCATGCATGTTGGTGCATCCCTACCACGCACTCACAC +
Preference number: 1 (lower is better)
Translates to: CMLVIGAETGSLDRK*QPHACWCIPTTHSH
Trigger: GTGTGAGTGCGTGGTAGGGATGCACCAACATGCATGGGGCTGTCATTTCCTATCCAAGCTGCCTGTCTCTGCACCAATCACAAGCATGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 90 bp AGTGGAAGACTGTTCTCATGCAAAGGAGGAGGCTTCTGGCAATCCTaGGGAGAGCTGCATGCTTGTGATTGGTGCAGAGACAGGCAGCTT +
Preference number: 1 (lower is better)
Translates to: SGRLFSCKGGGFWQS*GELHACDWCRDRQL
Trigger: AAGCTGCCTGTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTTGCATGAGAACAGTCTTCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR GCA 90 bp TGTTCTCATGCAAAGGAGGAGGCTTCTGGCAATCCTGGGGAGAGCTaGATGCTTGTGATTGGTGCAGAGACAGGCAGCTTGGATAGGAAA +
Preference number: 1 (lower is better)
Translates to: CSHAKEEASGNPGES*MLVIGAETGSLDRK
Trigger: TTTCCTATCCAAGCTGCCTGTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTTGCATGAGAACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 90 bp TTTCATCAGAGTGGAAGACTGTTCTCATGCAAAGGAGGAGGCTTCTaGCAATCCTGGGGAGAGCTGCATGCTTGTGATTGGTGCAGAGAC +
Preference number: 1 (lower is better)
Translates to: FHQSGRLFSCKGGGF*QSWGELHACDWCRD
Trigger: GTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTTGCATGAGAACAGTCTTCCACTCTGATGAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 90 bp GAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTaGTGCCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTG +
Preference number: 1 (lower is better)
Translates to: EAQNTAVGFSLPTLQ*CPGKQKQAQLHGSV
Trigger: CACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR GCA 90 bp GCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTaGCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTGTCT +
Preference number: 1 (lower is better)
Translates to: AQNTAVGFSLPTLQW*PGKQKQAQLHGSVS
Trigger: AGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 90 bp AAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCCCTaGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTGTCTGCAGT +
Preference number: 1 (lower is better)
Translates to: KHCCWFFFANITVVP*QAEAGSAPWFCVCS
Trigger: ACTGCAGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 90 bp ACCTGCACATTGATCAAGATCCCCAATAGTTCTGATGAAATGGTGTaGGAATGTAACTCCAGCCATCTGAATCCTATTGTCCAGCAAGGC +
Preference number: 1 (lower is better)
Translates to: TCTLIKIPNSSDEMV*ECNSSHLNPIVQQG
Trigger: GCCTTGCTGGACAATAGGATTCAGATGGCTGGAGTTACATTCTCACACCATTTCATCAGAACTATTGGGGATCTTGATCAATGTGCAGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 90 bp TGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATaGGAAGACGTTAATTCCATTATTGGACAAATTAGTGAACAAAAC +
Preference number: 1 (lower is better)
Translates to: CTPAMAPCFRSSSNR*EDVNSIIGQISEQN
Trigger: GTTTTGTTCACTAATTTGTCCAATAATGGAATTAACGTCTTCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR TCA 90 bp GTGCCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTGTCTGCAGTCATGTCAATCAACTGGACTaGAGCTCTACCAGGGCCTCA +
Preference number: 2 (lower is better)
Translates to: VPWQAEAGSAPWFCVCSHVNQLD*SSTRAS
Trigger: TGAGGCCCTGGTAGAGCTTCAGTCCAGTTGATTGAC...ATGACTGCAGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR TCA 90 bp GCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGACAGGGCCTCAGGTCCTaGACAAGGCCGAGACGAACT +
Preference number: 2 (lower is better)
Translates to: AMYSCNGPLFQIFLKQMRQGLRS*TRPRRT
Trigger: AGTTCGTCTCGGCCTTGTTCAGGACCTGAGGCCCTG...TCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp GGAGCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGACAGGGGACTATCTaGTGGGGAGGGAAACGGCAA +
Preference number: 2 (lower is better)
Translates to: GAMYSCNGPLFQIFLKQMRQGTI*WGGKRQ
Trigger: TTGCCGTTTCCCTCCCCACCAGATAGTCCCCTGTCT...CATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR GCA 90 bp GCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCCCTGGCGGAAGACTGTTCTCATaGAAAGGAGGAGGCTTCTGG +
Preference number: 2 (lower is better)
Translates to: AQNTAVGFSLPTLQWCPGGRLFS*KGGGFW
Trigger: CCAGAAGCCTCCTCCTTTGCATGAGAACAGTCTTCC...GCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCGGCTTCTGGCAATCCTaGGGAGAGCTGCATGCTTGT +
Preference number: 2 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCGFWQS*GELHAC
Trigger: ACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCC...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp GCATTTCAGAGAGTCTTAGCCTTCTTGCCAGGTGTAGTTTTTGTTTGGTTGGTTAAAGGAGGAGGCTTCTaGCAATCCTGGGGAGAGCTG +
Preference number: 2 (lower is better)
Translates to: AFQRVLAFLPGVVFVWLVKGGGF*QSWGEL
Trigger: CAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTT...AACCAACCAAACAAAAACTACACCTGGCAAGAAGGCTAAGACTCTCTGAAATGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp CCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCTGCTTTTCATCAGAGTaGAAGACTGTTCTCATGCAA +
Preference number: 2 (lower is better)
Translates to: PPGASFTPHSLLSQVCKVCFSSE*KTVLMQ
Trigger: TTGCATGAGAACAGTCTTCCACTCTGATGAAAAGCA...GACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR GCA 90 bp GCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGAAGAGGCTCAAAACACTaGTGTTGGTTTTTCTTTGCC +
Preference number: 2 (lower is better)
Translates to: AMYSCNGPLFQIFLKQMRRGSKH*CWFFFA
Trigger: GGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCT...TCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp GCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGAGAGACGAACTCCAGATaGAAAAGGAAGCATTTCAGA +
Preference number: 2 (lower is better)
Translates to: AMYSCNGPLFQIFLKQMRETNSR*KRKHFR
Trigger: TCTGAAATGCTTCCTTTTCCATCTGGAGTTCGTCTC...TCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp CTTCACTTTCACAAAACAAGCTCCTCTCAGTTCGTTTCAGTTTCTGATACTGATCTGCATGCTTGTGATTaGTGCAGAGACAGGCAGCTT +
Preference number: 2 (lower is better)
Translates to: LHFHKTSSSQFVSVSDTDLHACD*CRDRQL
Trigger: AAGCTGCCTGTCTCTGCACCAATCACAAGCATGCAG...ATCAGTATCAGAAACTGAAACGAACTGAGAGGAGCTTGTTTTGTGAAAGTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR-3UTR CCA 90 bp GCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGAATAGTTCTGATGAAATaGTGTGAGAATGTAACTCCA +
Preference number: 2 (lower is better)
Translates to: AMYSCNGPLFQIFLKQMRIVLMK*CENVTP
Trigger: TGGAGTTACATTCTCACACCATTTCATCAGAACTAT...TCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 72 bp GTGATTGGTGCAGAGACAGGCAGCTTGGATAGGAAATaGCAGCCCCATGCATGTTGGTGCATCCCTACCACG +
Preference number: 3 (lower is better)
Translates to: VIGAETGSLDRK*QPHACWCIPTT
Trigger: CGTGGTAGGGATGCACCAACATGCATGGGGCTGTCATTTCCTATCCAAGCTGCCTGTCTCTGCACCAATCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 72 bp TCAACTGGACTGAAGCTCTACCAGGGCCTCAGGTCCTaGACAAGGCCGAGACGAACTCCAGATGGAAAAGGA +
Preference number: 3 (lower is better)
Translates to: STGLKLYQGLRS*TRPRRTPDGKG
Trigger: TCCTTTTCCATCTGGAGTTCGTCTCGGCCTTGTTCAGGACCTGAGGCCCTGGTAGAGCTTCAGTCCAGTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 72 bp CTGTTCTCATGCAAAGGAGGAGGCTTCTGGCAATCCTaGGGAGAGCTGCATGCTTGTGATTGGTGCAGAGAC +
Preference number: 3 (lower is better)
Translates to: LFSCKGGGFWQS*GELHACDWCRD
Trigger: GTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTCCTTTGCATGAGAACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 72 bp AGGCTTCTGGCAATCCTGGGGAGAGCTGCATGCTTGTaGTTGGTGCAGAGACAGGCAGCTTGGATAGGAAAT +
Preference number: 3 (lower is better)
Translates to: RLLAILGRAACL*LVQRQAAWIGN
Trigger: ATTTCCTATCCAAGCTGCCTGTCTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR GCA 72 bp ACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTaGCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGT +
Preference number: 3 (lower is better)
Translates to: TAVGFSLPTLQW*PGKQKQAQLHG
Trigger: ACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR CCA 72 bp AACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTaGTGCCCTGGCAAGCAGAAGCAGGCTCAGCTCCAT +
Preference number: 3 (lower is better)
Translates to: NTAVGFSLPTLQ*CPGKQKQAQLH
Trigger: ATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 72 bp AGGGCCCTGCTTCACGGGAAGGACTATGATCGAGGATaGGGGAAAACTGACACTACAGTAATGCTTTATCAT +
Preference number: 3 (lower is better)
Translates to: RALLHGKDYDRG*GKTDTTVMLYH
Trigger: ATGATAAAGCATTACTGTAGTGTCAGTTTTCCCTCATCCTCGATCATAGTCCTTCCCGTGAAGCAGGGCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
3UTR TCA 72 bp GCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATaGGAAGACGTTAATTCCATTATTGGACAAATTAGT +
Preference number: 3 (lower is better)
Translates to: AMAPCFRSSSNR*EDVNSIIGQIS
Trigger: ACTAATTTGTCCAATAATGGAATTAACGTCTTCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp CCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCGGTCTATGCAGCTGTTaGGGGTCGACAGGCAGAGGG +
Preference number: 4 (lower is better)
Translates to: PPGASFTPHSLLSQVCKVGLCSC*GSTGRG
Trigger: CCCTCTGCCTGTCGACCCTCAACAGCTGCATAGACC...GACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CCA 90 bp CCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCCGGCCAAGGCCAGGTTaGCCATGTAAATCACGGCGG +
Preference number: 4 (lower is better)
Translates to: PPGASFTPHSLLSQVCKVRPRPG*PCKSRR
Trigger: CCGCCGTGATTTACATGGCCAACCTGGCCTTGGCCG...GACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp GAGGAGGCTTCTGGCAATCCTGGGGAGAGCTGCATGCTTGTGATTGGTGCAGAGAGCGCGTTTCTGGCGTaGTCCCTGAAATCTTTTGAG +
Preference number: 4 (lower is better)
Translates to: EEASGNPGESCMLVIGAESAFLA*SLKSFE
Trigger: CTCAAAAGATTTCAGGGATCACGCCAGAAACGCGCT...CTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp GCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGAGATCAGGGGGAACCAGATaGCAGAGAGGAGGTCGGCCA +
Preference number: 4 (lower is better)
Translates to: AMYSCNGPLFQIFLKQMRSGGTR*QRGGRP
Trigger: TGGCCGACCTCCTCTCTGTCATCTGGTTCCCCCTGA...TCTCATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp GGAGCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGGCCAACGGCGATGTTTaGCTTCTTCCTGGGGTGTCC +
Preference number: 4 (lower is better)
Translates to: GAMYSCNGPLFQIFLKQMANGDV*LLPGVS
Trigger: GGACACCCCAGGAAGAAGGCAAACATCGCCGTTGGC...CATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp GCATTTCAGAGAGTCTTAGCCTTCTTGCCAGGTGTAGTTTTTGTTTGGTTGGTTAGGCCGCCAGAAGGGTaGTACCTCCCAGCAGCCACG +
Preference number: 4 (lower is better)
Translates to: AFQRVLAFLPGVVFVWLVRPPEG*YLPAAT
Trigger: CGTGGCTGCTGGGAGGTATCACCCTTCTGGCGGCCT...AACCAACCAAACAAAAACTACACCTGGCAAGAAGGCTAAGACTCTCTGAAATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp GTGCCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTGTCTGCAGTCATGGTGGTGATGTTCAATaGTGGAATGTAGATGGTCTG +
Preference number: 4 (lower is better)
Translates to: VPWQAEAGSAPWFCVCSHGGDVQ*WNVDGL
Trigger: CAGACCATCTACATTCCAGCATTGAACATCACCACC...ATGACTGCAGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp CCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCAGATCCAGAGGGCCATaGCATTACTGGGCAAACCAA +
Preference number: 4 (lower is better)
Translates to: PPGASFTPHSLLSQVCKVRSRGP*HYWANQ
Trigger: TTGGTTTGCCCAGTAATGGCATGGCCCTCTGGATCT...GACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp TTAGGATGCCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTCGTAGACCCAGTTGTTaGCATGTAGGTGGTAGGAGA +
Preference number: 4 (lower is better)
Translates to: LGCRQEPHSLLIHSSLKSRRPSC*HVGGRR
Trigger: TCTCCTACCACCTACATGGCAACAACTGGGTCTACG...AGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGGCATCCTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CCA 90 bp GGAGCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGTGTTTGCCTTCTTCCTaGGGTGTCCCATGGGGTTCA +
Preference number: 4 (lower is better)
Translates to: GAMYSCNGPLFQIFLKQMCLPSS*GVPWGS
Trigger: TGAACCCCATGGGACACCCCAGGAAGAAGGCAAACA...CATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp CCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCCATACAAAGGGATGGTaGCCAGAAAAATCAGGAGCC +
Preference number: 4 (lower is better)
Translates to: PPGASFTPHSLLSQVCKVHTKGW*PEKSGA
Trigger: GGCTCCTGATTTTTCTGGTCACCATCCCTTTGTATG...GACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp GTGCCCTGGCAAGCAGAAGCAGGCTCAGCTCCATGGTTCTGTGTCTGCAGTCATTCTGCCTCTGGGTTTTaGTTAGGAAATAATGCACTA +
Preference number: 4 (lower is better)
Translates to: VPWQAEAGSAPWFCVCSHSASGF*LGNNAL
Trigger: TAGTGCATTATTTCCTAATCAAAACCCAGAGGCAGA...ATGACTGCAGACACAGAACCATGGAGCTGAGCCTGCTTCTGCTTGCCAGGGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp TTAGGATGCCGCCAGGAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTAGTCGGATAGCCCTCTaGCTTTTCTTCTCTGAGTGT +
Preference number: 4 (lower is better)
Translates to: LGCRQEPHSLLIHSSLKSSRIAL*LFFSEC
Trigger: ACACTCAGAGAAGAAAAGGCAGAGGGCTATCCGACT...AGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTCCTGGCGGCATCCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR GCA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCATCACCCAGTACCTCTaGACGCTGAGGCAGGTCATG +
Preference number: 4 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCITQYL*TLRQVM
Trigger: CATGACCTGCCTCAGCGTGCAGAGGTACTGGGTGAT...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCGAACCCCTTTCCCAGTaGTTGGAGGCTGGGTTTCTA +
Preference number: 4 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCEPLSQ*LEAGFL
Trigger: TAGAAACCCAGCCTCCAATCACTGGGAAAGGGGTTC...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp GCATTTCAGAGAGTCTTAGCCTTCTTGCCAGGTGTAGTTTTTGTTTGGTTGGTTCATAGAAAAAGCCAATaGGCACCTTGCACAGGGCCT +
Preference number: 4 (lower is better)
Translates to: AFQRVLAFLPGVVFVWLVHRKSQ*APCTGP
Trigger: AGGCCCTGTGCAAGGTGCTCATTGGCTTTTTCTATG...AACCAACCAAACAAAAACTACACCTGGCAAGAAGGCTAAGACTCTCTGAAATGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CCA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCCAGAGAACTCATCGATaGAAAAGCCTGGTTCTACCG +
Preference number: 4 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCQRTHR*KSLVLP
Trigger: CGGTAGAACCAGGCTTTTCCATCGATGAGTTCTCTG...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CCA 90 bp GAGCCTCATTCACTCCTCATTCACTCCTCTCTCAAGTCTGTAAAGTCAATCAACGGTGATGTTCAATGCTaGAATGTAGATGGTCTGCTT +
Preference number: 4 (lower is better)
Translates to: EPHSLLIHSSLKSVKSINGDVQC*NVDGLL
Trigger: AAGCAGACCATCTACATTCCAGCATTGAACATCACC...GTTGATTGACTTTACAGACTTGAGAGAGGAGTGAATGAGGAGTGAATGAGGCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp CTTCACTTTCACAAAACAAGCTCCTCTCAGTTCGTTTCAGTTTCTGATACTGATGACTCCAATGGCCAGTaGGAGGAAGTAATTGAACAT +
Preference number: 4 (lower is better)
Translates to: LHFHKTSSSQFVSVSDTDDSNGQ*EEVIEH
Trigger: ATGTTCAATTACTTCCTCTCACTGGCCATTGGAGTC...ATCAGTATCAGAAACTGAAACGAACTGAGAGGAGCTTGTTTTGTGAAAGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp CTTCACTTTCACAAAACAAGCTCCTCTCAGTTCGTTTCAGTTTCTGATACTGATCTGCCTTTTCTTCTCTaGGTGTTCATCCATAGCAGA +
Preference number: 4 (lower is better)
Translates to: LHFHKTSSSQFVSVSDTDLPFLL*VFIHSR
Trigger: TCTGCTATGGATGAACACTCAGAGAAGAAAAGGCAG...ATCAGTATCAGAAACTGAAACGAACTGAGAGGAGCTTGTTTTGTGAAAGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CCA 90 bp CTTCACTTTCACAAAACAAGCTCCTCTCAGTTCGTTTCAGTTTCTGATACTGATACAGGAAGACTCCAATaGCCAGTGAGAGGAAGTAAT +
Preference number: 4 (lower is better)
Translates to: LHFHKTSSSQFVSVSDTDTGRLQ*PVRGSN
Trigger: ATTACTTCCTCTCACTGGCCATTGGAGTCTTCCTGT...ATCAGTATCAGAAACTGAAACGAACTGAGAGGAGCTTGTTTTGTGAAAGTGAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR TCA 90 bp CTTCACTTTCACAAAACAAGCTCCTCTCAGTTCGTTTCAGTTTCTGATACTGATTTCTGGCGTGATCCCTaGAATCTTTTGAGACAAAGT +
Preference number: 4 (lower is better)
Translates to: LHFHKTSSSQFVSVSDTDFWRDP*NLLRQS
Trigger: ACTTTGTCTCAAAAGATTTCAGGGATCACGCCAGAA...ATCAGTATCAGAAACTGAAACGAACTGAGAGGAGCTTGTTTTGTGAAAGTGAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CCA 90 bp GCCAGATTGCCAAGGAGACGCCAACGGCGATGTTTGCCTTCTTCCTaGGGTGTCCCATGGGGTTCACGATCACCCAGTACCTCTGCACGC +
Preference number: 5 (lower is better)
Translates to: ARLPRRRQRRCLPSS*GVPWGSRSPSTSAR
Trigger: GCGTGCAGAGGTACTGGGTGATCGTGAACCCCATGGGACACCCCAGGAAGAAGGCAAACATCGCCGTTGGCGTCTCCTTGGCAATCTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CAA 90 bp GAGGAGGCTTCTGGCAATCCTGGGGAGAGCTGCATGCTTGTGATTGGTGCAGAGAAATCAGGAGCCAGATaGCCAAGGAGACGCCAACGG +
Preference number: 5 (lower is better)
Translates to: EEASGNPGESCMLVIGAEKSGAR*PRRRQR
Trigger: CCGTTGGCGTCTCCTTGGCAATCTGGCTCCTGATTT...CTCTGCACCAATCACAAGCATGCAGCTCTCCCCAGGATTGCCAGAAGCCTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 90 bp CATGACATACAAAGGGATGGTGACCAGAAAAATCAGGAGCCAGATTaGCAAGGAGACGCCAACGGCGATGTTTGCCTTCTTCCTGGGGTG +
Preference number: 5 (lower is better)
Translates to: HDIQRDGDQKNQEPD*QGDANGDVCLLPGV
Trigger: CACCCCAGGAAGAAGGCAAACATCGCCGTTGGCGTCTCCTTGGCAATCTGGCTCCTGATTTTTCTGGTCACCATCCCTTTGTATGTCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 90 bp CAGCACGGTGATGATGAGTCGGATAGCCCTCTGCCTTTTCTTCTCTaGGTGTTCATCCATAGCAGAAGAGCGGAGCGTCTTGATCATGAG +
Preference number: 5 (lower is better)
Translates to: QHGDDESDSPLPFLL*VFIHSRRAERLDHE
Trigger: CTCATGATCAAGACGCTCCGCTCTTCTGCTATGGATGAACACTCAGAGAAGAAAAGGCAGAGGGCTATCCGACTCATCATCACCGTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 90 bp CAGTGCGGACACTTCGGCAGAGGAGCGCGTTTCTGGCGTGATCCCTaGAATCTTTTGAGACAAAGTAATAGACAAAGGGGTCTATGCAGC +
Preference number: 5 (lower is better)
Translates to: QCGHFGRGARFWRDP*NLLRQSNRQRGLCS
Trigger: GCTGCATAGACCCCTTTGTCTATTACTTTGTCTCAAAAGATTTCAGGGATCACGCCAGAAACGCGCTCCTCTGCCGAAGTGTCCGCACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 90 bp ATGAAGTACATGGCCAGCACGGTGATGATGAGTCGGATAGCCCTCTaGCTTTTCTTCTCTGAGTGTTCATCCATAGCAGAAGAGCGGAGC +
Preference number: 5 (lower is better)
Translates to: MKYMASTVMMSRIAL*LFFSECSSIAEERS
Trigger: GCTCCGCTCTTCTGCTATGGATGAACACTCAGAGAAGAAAAGGCAGAGGGCTATCCGACTCATCATCACCGTGCTGGCCATGTACTTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CAA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCCGCCAACGGCGATGTTaGCCTTCTTCCTGGGGTGTC +
Preference number: 5 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCRQRRC*PSSWGV
Trigger: GACACCCCAGGAAGAAGGCAAACATCGCCGTTGGCG...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CAA 90 bp GGAGCCATGTACTCCTGCAATGGCCCCTTGTTTCAGATCTTCCTCAAACAGATGACTACGAGCAGAAGGTaGCTAGGAGCAAAGCAGATG +
Preference number: 5 (lower is better)
Translates to: GAMYSCNGPLFQIFLKQMTTSRR*LGAKQM
Trigger: CATCTGCTTTGCTCCTAGCAACCTTCTGCTCGTAGT...CATCTGTTTGAGGAAGATCTGAAACAAGGGGCCATTGCAGGAGTACATGGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CCA 90 bp TACCTCCTCAGGCAGCACATCGTGACAGGTGGTGATGTTCAATGCTaGAATGTAGATGGTCTGCTTCATGACATACAAAGGGATGGTGAC +
Preference number: 5 (lower is better)
Translates to: YLLRQHIVTGGDVQC*NVDGLLHDIQRDGD
Trigger: GTCACCATCCCTTTGTATGTCATGAAGCAGACCATCTACATTCCAGCATTGAACATCACCACCTGTCACGATGTGCTGCCTGAGGAGGTA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS-3UTR CAA 90 bp AAAGAGGCTCAAAACACTGCTGTTGGTTTTTCTTTGCCAACATTACAGTGGTGCGACTTCCTGGAGAACTaGTTGGAGCTGAGCGAGATT +
Preference number: 5 (lower is better)
Translates to: KEAQNTAVGFSLPTLQWCDFLEN*LELSEI
Trigger: AATCTCGCTCAGCTCCAACAAGTTCTCCAGGAAGTC...GCACCACTGTAATGTTGGCAAAGAAAAACCAACAGCAGTGTTTTGAGCCTCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 72 bp GCACCTTGCACAGGGCCTCCCCGTAGACCCAGTTGTTaGCATGTAGGTGGTAGGAGATCTTCAGGGGGAACC +
Preference number: 6 (lower is better)
Translates to: APCTGPPRRPSC*HVGGRRSSGGT
Trigger: GGTTCCCCCTGAAGATCTCCTACCACCTACATGGCAACAACTGGGTCTACGGGGAGGCCCTGTGCAAGGTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CCA 72 bp CCAAGGAGACGCCAACGGCGATGTTTGCCTTCTTCCTaGGGTGTCCCATGGGGTTCACGATCACCCAGTACC +
Preference number: 6 (lower is better)
Translates to: PRRRQRRCLPSS*GVPWGSRSPST
Trigger: GGTACTGGGTGATCGTGAACCCCATGGGACACCCCAGGAAGAAGGCAAACATCGCCGTTGGCGTCTCCTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CAA 90 bp GTAGGAGCCGGACTTCCTGGAGAACTTGTTGGAGCTGAGCGAGATTaGCATGCGATTCACAGTGCGGACACTTCGGCAGAGGAGCGCGTT +
Preference number: 6 (lower is better)
Translates to: VGAGLPGELVGAERD*HAIHSADTSAEERV
Trigger: AACGCGCTCCTCTGCCGAAGTGTCCGCACTGTGAATCGCATGCAAATCTCGCTCAGCTCCAACAAGTTCTCCAGGAAGTCCGGCTCCTAC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CAA 90 bp GGAGGCTGGGTTTCTAATCTGCCAATAAGACTTCTTCCTTTACTGTaGTTGCGTCCCGGTGCAAGGTTCTCGGTCCGGCTGCAGGAGACC +
Preference number: 6 (lower is better)
Translates to: GGWVSNLPIRLLPLL*LRPGARFSVRLQET
Trigger: GGTCTCCTGCAGCCGGACCGAGAACCTTGCACCGGGACGCAACAACAGTAAAGGAAGAAGTCTTATTGGCAGATTAGAAACCCAGCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 72 bp GACTTCCTGGAGAACTTGTTGGAGCTGAGCGAGATTTaGATGCGATTCACAGTGCGGACACTTCGGCAGAGG +
Preference number: 6 (lower is better)
Translates to: DFLENLLELSEI*MRFTVRTLRQR
Trigger: CCTCTGCCGAAGTGTCCGCACTGTGAATCGCATGCAAATCTCGCTCAGCTCCAACAAGTTCTCCAGGAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CAA 72 bp GGACTTCCTGGAGAACTTGTTGGAGCTGAGCGAGATTaGCATGCGATTCACAGTGCGGACACTTCGGCAGAG +
Preference number: 6 (lower is better)
Translates to: GLPGELVGAERD*HAIHSADTSAE
Trigger: CTCTGCCGAAGTGTCCGCACTGTGAATCGCATGCAAATCTCGCTCAGCTCCAACAAGTTCTCCAGGAAGTCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 72 bp AAGGAGGGCCGGGAACAGGAAGACTCCAATGGCCAGTaGGAGGAAGTAATTGAACATGTCCCCCACCAATAC +
Preference number: 6 (lower is better)
Translates to: KEGREQEDSNGQ*EEVIEHVPHQY
Trigger: GTATTGGTGGGGGACATGTTCAATTACTTCCTCTCACTGGCCATTGGAGTCTTCCTGTTCCCGGCCCTCCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 72 bp ACAGGAAGACTCCAATGGCCAGTGAGAGGAAGTAATTaGACATGTCCCCCACCAATACCTCCTCAGGCAGCA +
Preference number: 6 (lower is better)
Translates to: TGRLQWPVRGSN*TCPPPIPPQAA
Trigger: TGCTGCCTGAGGAGGTATTGGTGGGGGACATGTTCAATTACTTCCTCTCACTGGCCATTGGAGTCTTCCTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 72 bp CAAAGGGATGGTGACCAGAAAAATCAGGAGCCAGATTaGCAAGGAGACGCCAACGGCGATGTTTGCCTTCTT +
Preference number: 6 (lower is better)
Translates to: QRDGDQKNQEPD*QGDANGDVCLL
Trigger: AAGAAGGCAAACATCGCCGTTGGCGTCTCCTTGGCAATCTGGCTCCTGATTTTTCTGGTCACCATCCCTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CAA 72 bp TCTAATCTGCCAATAAGACTTCTTCCTTTACTGTTGTaGCGTCCCGGTGCAAGGTTCTCGGTCCGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: SNLPIRLLPLLL*RPGARFSVRLQ
Trigger: CTGCAGCCGGACCGAGAACCTTGCACCGGGACGCAACAACAGTAAAGGAAGAAGTCTTATTGGCAGATTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 72 bp CCAATACCTCCTCAGGCAGCACATCGTGACAGGTGGTaGTGTTCAATGCTGGAATGTAGATGGTCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: PIPPQAAHRDRW*CSMLECRWSAS
Trigger: TGAAGCAGACCATCTACATTCCAGCATTGAACATCACCACCTGTCACGATGTGCTGCCTGAGGAGGTATTGG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 72 bp GATGATGAGTCGGATAGCCCTCTGCCTTTTCTTCTCTaGGTGTTCATCCATAGCAGAAGAGCGGAGCGTCTT +
Preference number: 6 (lower is better)
Translates to: DDESDSPLPFLL*VFIHSRRAERL
Trigger: AAGACGCTCCGCTCTTCTGCTATGGATGAACACTCAGAGAAGAAAAGGCAGAGGGCTATCCGACTCATCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS GCA 72 bp ATGGCCAGCACGGTGATGATGAGTCGGATAGCCCTCTaGCTTTTCTTCTCTGAGTGTTCATCCATAGCAGAA +
Preference number: 6 (lower is better)
Translates to: MASTVMMSRIAL*LFFSECSSIAE
Trigger: TTCTGCTATGGATGAACACTCAGAGAAGAAAAGGCAGAGGGCTATCCGACTCATCATCACCGTGCTGGCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CAA 72 bp GTTTCTAATCTGCCAATAAGACTTCTTCCTTTACTGTaGTTGCGTCCCGGTGCAAGGTTCTCGGTCCGGCTG +
Preference number: 6 (lower is better)
Translates to: VSNLPIRLLPLL*LRPGARFSVRL
Trigger: CAGCCGGACCGAGAACCTTGCACCGGGACGCAACAACAGTAAAGGAAGAAGTCTTATTGGCAGATTAGAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS TCA 72 bp GAGGAGCGCGTTTCTGGCGTGATCCCTGAAATCTTTTaGGACAAAGTAATAGACAAAGGGGTCTATGCAGCT +
Preference number: 6 (lower is better)
Translates to: EERVSGVIPEIF*DKVIDKGVYAA
Trigger: AGCTGCATAGACCCCTTTGTCTATTACTTTGTCTCAAAAGATTTCAGGGATCACGCCAGAAACGCGCTCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10
CDS CCA 72 bp AGGCAGCACATCGTGACAGGTGGTGATGTTCAATGCTaGAATGTAGATGGTCTGCTTCATGACATACAAAGG +
Preference number: 6 (lower is better)
Translates to: RQHIVTGGDVQC*NVDGLLHDIQR
Trigger: CCTTTGTATGTCATGAAGCAGACCATCTACATTCCAGCATTGAACATCACCACCTGTCACGATGTGCTGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022185.10